PDB 5gan

PDB Links
Overview

PDB Information

PDB	5GAN
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 angstrom resolution. Nguyen, T.H., Galej, W.P., Bai, X.C., Oubridge, C., Newman, A.J., Scheres, S.H., Nagai, K. Nature
Header	Transcription
Released	2015-12-15
Resolution	3.600
CATH Insert Date	10 Apr, 2016

PDB Images (75)

5gan

PDB 5gan

5gan2

PDB Chain 5gan2

5gan3

PDB Chain 5gan3

5gan4

PDB Chain 5gan4

5gan5

PDB Chain 5gan5

5gan6

PDB Chain 5gan6

5gan7

PDB Chain 5gan7

5gan8

PDB Chain 5gan8

5ganA

PDB Chain 5ganA

5ganb

PDB Chain 5ganb

5ganB

PDB Chain 5ganB

5ganC

PDB Chain 5ganC

5gand

PDB Chain 5gand

5ganD

PDB Chain 5ganD

5gane

PDB Chain 5gane

5ganE

PDB Chain 5ganE

5ganf

PDB Chain 5ganf

5ganF

PDB Chain 5ganF

5gang

PDB Chain 5gang

5ganG

PDB Chain 5ganG

5ganh

PDB Chain 5ganh

5ganH

PDB Chain 5ganH

5ganj

PDB Chain 5ganj

5ganJ

PDB Chain 5ganJ

5gank

PDB Chain 5gank

5ganK

PDB Chain 5ganK

5ganl

PDB Chain 5ganl

5ganm

PDB Chain 5ganm

5gann

PDB Chain 5gann

5ganp

PDB Chain 5ganp

5ganq

PDB Chain 5ganq

5ganr

PDB Chain 5ganr

5ganU

PDB Chain 5ganU

5ganV

PDB Chain 5ganV

5ganW

PDB Chain 5ganW

5ganx

PDB Chain 5ganx

5gan200

CATH Domain 5gan200

5gan300

CATH Domain 5gan300

5gan400

CATH Domain 5gan400

5gan500

CATH Domain 5gan500

5gan600

CATH Domain 5gan600

5gan700

CATH Domain 5gan700

5gan800

CATH Domain 5gan800

5ganb00

CATH Domain 5ganb00

5ganB01

CATH Domain 5ganB01

5ganB02

CATH Domain 5ganB02

5ganB03

CATH Domain 5ganB03

5ganB04

CATH Domain 5ganB04

5ganB05

CATH Domain 5ganB05

5ganB06

CATH Domain 5ganB06

5ganB07

CATH Domain 5ganB07

5ganB08

CATH Domain 5ganB08

5ganB09

CATH Domain 5ganB09

5ganB10

CATH Domain 5ganB10

5ganB11

CATH Domain 5ganB11

5ganB12

CATH Domain 5ganB12

5ganB13

CATH Domain 5ganB13

5gand00

CATH Domain 5gand00

5ganD00

CATH Domain 5ganD00

5gane00

CATH Domain 5gane00

5ganf00

CATH Domain 5ganf00

5ganF01

CATH Domain 5ganF01

5ganF02

CATH Domain 5ganF02

5ganF03

CATH Domain 5ganF03

5gang00

CATH Domain 5gang00

5ganh00

CATH Domain 5ganh00

5ganj00

CATH Domain 5ganj00

5gank00

CATH Domain 5gank00

5ganK00

CATH Domain 5ganK00

5ganl00

CATH Domain 5ganl00

5ganm00

CATH Domain 5ganm00

5gann00

CATH Domain 5gann00

5ganp00

CATH Domain 5ganp00

5ganq00

CATH Domain 5ganq00

5ganr00

CATH Domain 5ganr00

PDB Prints

PDB Chains (35)

Chain ID	Date inserted into CATH	CATH Status
2	11 Apr, 2016	Chopped
3	11 Apr, 2016	Chopped
4	11 Apr, 2016	Chopped
5	11 Apr, 2016	Chopped
6	11 Apr, 2016	Chopped
7	11 Apr, 2016	Chopped
8	11 Apr, 2016	Chopped
A	11 Apr, 2016	Holding pen
b	11 Apr, 2016	Chopped
B	11 Apr, 2016	Chopped
C	11 Apr, 2016	Holding pen
d	11 Apr, 2016	Chopped
D	11 Apr, 2016	Chopped
e	11 Apr, 2016	Chopped
E	11 Apr, 2016	Domchop review
f	11 Apr, 2016	Chopped
F	11 Apr, 2016	Chopped
g	11 Apr, 2016	Chopped
G	11 Apr, 2016	Holding pen
h	11 Apr, 2016	Chopped
H	11 Apr, 2016	Holding pen
j	11 Apr, 2016	Chopped
J	11 Apr, 2016	Write scan list
k	11 Apr, 2016	Chopped
K	11 Apr, 2016	Chopped
l	11 Apr, 2016	Chopped
m	11 Apr, 2016	Chopped
n	11 Apr, 2016	Chopped
p	11 Apr, 2016	Chopped
q	11 Apr, 2016	Chopped
r	11 Apr, 2016	Chopped
U	11 Apr, 2016	Rejected
V	11 Apr, 2016	Rejected
W	11 Apr, 2016	Rejected
x	11 Apr, 2016	Rejected

CATH Domains (39)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5gan200	12 May, 2016	2.30.30.100	Assigned
5gan300	12 May, 2016	2.30.30.100	Assigned
5gan400	12 May, 2016	2.30.30.100	Assigned
5gan500	12 May, 2016	2.30.30.100	Assigned
5gan600	12 May, 2016	2.30.30.100	Assigned
5gan700	13 May, 2016	2.30.30.100	Assigned
5gan800	13 May, 2016	2.30.30.100	Assigned
5ganb00	30 Nov, 2016		Holding pen
5ganB01	20 Feb, 2018		Holding pen
5ganB02	20 Feb, 2018	3.40.50.300	Assigned
5ganB03	20 Feb, 2018	3.40.50.300	Assigned
5ganB04	20 Feb, 2018	1.10.10.10	Assigned
5ganB05	20 Feb, 2018	1.10.3380.10	Assigned
5ganB06	20 Feb, 2018	1.10.150.20	Assigned
5ganB07	20 Feb, 2018	2.60.40.150	Assigned
5ganB08	20 Feb, 2018	3.40.50.300	Assigned
5ganB09	20 Feb, 2018	3.40.50.300	Assigned
5ganB10	20 Feb, 2018	1.10.10.10	Assigned
5ganB11	20 Feb, 2018	1.10.3380.10	Assigned
5ganB12	20 Feb, 2018	1.10.150.20	Assigned
5ganB13	20 Feb, 2018	2.60.40.150	Assigned
5gand00	13 May, 2016	2.30.30.100	Assigned
5ganD00	13 May, 2016	3.40.30.10	Assigned
5gane00	13 May, 2016	2.30.30.100	Assigned
5ganf00	13 May, 2016	2.30.30.100	Assigned
5ganF01	09 May, 2018		Write scan list
5ganF02	09 May, 2018		Write scan list
5ganF03	09 May, 2018		Write scan list
5gang00	13 May, 2016	2.30.30.100	Assigned
5ganh00	30 Nov, 2016	2.30.30.100	Assigned
5ganj00	13 May, 2016	2.30.30.100	Assigned
5gank00	30 Nov, 2016		Holding pen
5ganK00	13 May, 2016	3.30.1330.30	Assigned
5ganl00	30 Nov, 2016	2.30.30.100	Assigned
5ganm00	13 May, 2016	2.30.30.100	Assigned
5gann00	13 May, 2016	2.30.30.100	Assigned
5ganp00	13 May, 2016	2.30.30.100	Assigned
5ganq00	13 May, 2016	2.30.30.100	Assigned
5ganr00	13 May, 2016	2.30.30.100	Assigned

UniProtKB Entries (29)

Accession	Gene ID	Taxon	Description
P39990	SNU13_YEAST	Saccharomyces cerevisiae S288C	13 kDa ribonucleoprotein-associated protein
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
P36048	SN114_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor SNU114
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
P40089	LSM5_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm5
P40070	LSM4_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm4
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B
P49704	PRP31_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-processing factor 31
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
P57743	LSM3_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm3
P19735	PRP6_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor 6
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
Q06406	LSM6_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm6
P38203	LSM2_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm2
P33334	PRP8_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor 8
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
P20053	PRP4_YEAST	Saccharomyces cerevisiae S288C	U4/U6 small nuclear ribonucleoprotein PRP4
Q06819	DIB1_YEAST	Saccharomyces cerevisiae S288C	Spliceosomal protein DIB1
P47093	LSM8_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm8
P53905	LSM7_YEAST	Saccharomyces cerevisiae S288C	U6 snRNA-associated Sm-like protein LSm7
P32639	BRR2_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing helicase BRR2
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B