PDB 5dkp

PDB Links
Overview

PDB Information

PDB	5DKP
Method	X-RAY DIFFRACTION
Host Organism	Escherichia coli
Gene Source	Neisseria meningitidis serogroup B (strain MC58)
Primary Citation	Development and Characterization of Potent Cyclic Acyldepsipeptide Analogues with Increased Antimicrobial Activity. Goodreid, J.D., Janetzko, J., Santa Maria, J.P., Wong, K.S., Leung, E., Eger, B.T., Bryson, S., Pai, E.F., Gray-Owen, S.D., Walker, S., Houry, W.A., Batey, R.A. J.Med.Chem.
Header	Hydrolase/Antibiotic
Released	2015-09-03
Resolution	2.380
CATH Insert Date	10 Apr, 2016

PDB Images (85)

5dkp

PDB 5dkp

5dkp0

PDB Chain 5dkp0

5dkp1

PDB Chain 5dkp1

5dkp2

PDB Chain 5dkp2

5dkp3

PDB Chain 5dkp3

5dkpa

PDB Chain 5dkpa

5dkpA

PDB Chain 5dkpA

5dkpb

PDB Chain 5dkpb

5dkpB

PDB Chain 5dkpB

5dkpc

PDB Chain 5dkpc

5dkpC

PDB Chain 5dkpC

5dkpd

PDB Chain 5dkpd

5dkpD

PDB Chain 5dkpD

5dkpe

PDB Chain 5dkpe

5dkpE

PDB Chain 5dkpE

5dkpf

PDB Chain 5dkpf

5dkpF

PDB Chain 5dkpF

5dkpg

PDB Chain 5dkpg

5dkpG

PDB Chain 5dkpG

5dkph

PDB Chain 5dkph

5dkpH

PDB Chain 5dkpH

5dkpi

PDB Chain 5dkpi

5dkpI

PDB Chain 5dkpI

5dkpj

PDB Chain 5dkpj

5dkpJ

PDB Chain 5dkpJ

5dkpk

PDB Chain 5dkpk

5dkpK

PDB Chain 5dkpK

5dkpl

PDB Chain 5dkpl

5dkpL

PDB Chain 5dkpL

5dkpm

PDB Chain 5dkpm

5dkpM

PDB Chain 5dkpM

5dkpn

PDB Chain 5dkpn

5dkpN

PDB Chain 5dkpN

5dkpo

PDB Chain 5dkpo

5dkpO

PDB Chain 5dkpO

5dkpp

PDB Chain 5dkpp

5dkpP

PDB Chain 5dkpP

5dkpq

PDB Chain 5dkpq

5dkpQ

PDB Chain 5dkpQ

5dkpr

PDB Chain 5dkpr

5dkpR

PDB Chain 5dkpR

5dkps

PDB Chain 5dkps

5dkpS

PDB Chain 5dkpS

5dkpt

PDB Chain 5dkpt

5dkpT

PDB Chain 5dkpT

5dkpu

PDB Chain 5dkpu

5dkpU

PDB Chain 5dkpU

5dkpv

PDB Chain 5dkpv

5dkpV

PDB Chain 5dkpV

5dkpw

PDB Chain 5dkpw

5dkpW

PDB Chain 5dkpW

5dkpx

PDB Chain 5dkpx

5dkpX

PDB Chain 5dkpX

5dkpy

PDB Chain 5dkpy

5dkpY

PDB Chain 5dkpY

5dkpz

PDB Chain 5dkpz

5dkpZ

PDB Chain 5dkpZ

5dkpa00

CATH Domain 5dkpa00

5dkpA00

CATH Domain 5dkpA00

5dkpb00

CATH Domain 5dkpb00

5dkpB00

CATH Domain 5dkpB00

5dkpc00

CATH Domain 5dkpc00

5dkpC00

CATH Domain 5dkpC00

5dkpd00

CATH Domain 5dkpd00

5dkpD00

CATH Domain 5dkpD00

5dkpe00

CATH Domain 5dkpe00

5dkpE00

CATH Domain 5dkpE00

5dkpf00

CATH Domain 5dkpf00

5dkpF00

CATH Domain 5dkpF00

5dkpg00

CATH Domain 5dkpg00

5dkpG00

CATH Domain 5dkpG00

5dkph00

CATH Domain 5dkph00

5dkpH00

CATH Domain 5dkpH00

5dkpi00

CATH Domain 5dkpi00

5dkpI00

CATH Domain 5dkpI00

5dkpj00

CATH Domain 5dkpj00

5dkpJ00

CATH Domain 5dkpJ00

5dkpk00

CATH Domain 5dkpk00

5dkpK00

CATH Domain 5dkpK00

5dkpl00

CATH Domain 5dkpl00

5dkpL00

CATH Domain 5dkpL00

5dkpm00

CATH Domain 5dkpm00

5dkpM00

CATH Domain 5dkpM00

5dkpn00

CATH Domain 5dkpn00

5dkpN00

CATH Domain 5dkpN00

PDB Prints

PDB Chains (56)

Chain ID	Date inserted into CATH	CATH Status
0	11 Apr, 2016	Rejected
1	11 Apr, 2016	Rejected
2	11 Apr, 2016	Rejected
3	11 Apr, 2016	Rejected
a	11 Apr, 2016	Chopped
A	11 Apr, 2016	Chopped
b	11 Apr, 2016	Chopped
B	11 Apr, 2016	Chopped
c	11 Apr, 2016	Chopped
C	11 Apr, 2016	Chopped
d	11 Apr, 2016	Chopped
D	11 Apr, 2016	Chopped
e	11 Apr, 2016	Chopped
E	11 Apr, 2016	Chopped
f	11 Apr, 2016	Chopped
F	11 Apr, 2016	Chopped
g	11 Apr, 2016	Chopped
G	11 Apr, 2016	Chopped
h	11 Apr, 2016	Chopped
H	11 Apr, 2016	Chopped
i	11 Apr, 2016	Chopped
I	11 Apr, 2016	Chopped
j	11 Apr, 2016	Chopped
J	11 Apr, 2016	Chopped
k	11 Apr, 2016	Chopped
K	11 Apr, 2016	Chopped
l	11 Apr, 2016	Chopped
L	11 Apr, 2016	Chopped
m	11 Apr, 2016	Chopped
M	11 Apr, 2016	Chopped
n	11 Apr, 2016	Chopped
N	11 Apr, 2016	Chopped
o	11 Apr, 2016	Rejected
O	11 Apr, 2016	Rejected
p	11 Apr, 2016	Rejected
P	11 Apr, 2016	Rejected
q	11 Apr, 2016	Rejected
Q	11 Apr, 2016	Rejected
r	11 Apr, 2016	Rejected
R	11 Apr, 2016	Rejected
s	11 Apr, 2016	Rejected
S	11 Apr, 2016	Rejected
t	11 Apr, 2016	Rejected
T	11 Apr, 2016	Rejected
u	11 Apr, 2016	Rejected
U	11 Apr, 2016	Rejected
v	11 Apr, 2016	Rejected
V	11 Apr, 2016	Rejected
w	11 Apr, 2016	Rejected
W	11 Apr, 2016	Rejected
x	11 Apr, 2016	Rejected
X	11 Apr, 2016	Rejected
y	11 Apr, 2016	Rejected
Y	11 Apr, 2016	Rejected
z	11 Apr, 2016	Rejected
Z	11 Apr, 2016	Rejected

CATH Domains (28)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5dkpa00	07 May, 2016	3.90.226.10	Assigned
5dkpA00	07 May, 2016	3.90.226.10	Assigned
5dkpb00	07 May, 2016	3.90.226.10	Assigned
5dkpB00	07 May, 2016	3.90.226.10	Assigned
5dkpc00	07 May, 2016	3.90.226.10	Assigned
5dkpC00	07 May, 2016	3.90.226.10	Assigned
5dkpd00	07 May, 2016	3.90.226.10	Assigned
5dkpD00	07 May, 2016	3.90.226.10	Assigned
5dkpe00	07 May, 2016	3.90.226.10	Assigned
5dkpE00	07 May, 2016	3.90.226.10	Assigned
5dkpf00	07 May, 2016	3.90.226.10	Assigned
5dkpF00	07 May, 2016	3.90.226.10	Assigned
5dkpg00	07 May, 2016	3.90.226.10	Assigned
5dkpG00	07 May, 2016	3.90.226.10	Assigned
5dkph00	07 May, 2016	3.90.226.10	Assigned
5dkpH00	07 May, 2016	3.90.226.10	Assigned
5dkpi00	07 May, 2016	3.90.226.10	Assigned
5dkpI00	07 May, 2016	3.90.226.10	Assigned
5dkpj00	07 May, 2016	3.90.226.10	Assigned
5dkpJ00	07 May, 2016	3.90.226.10	Assigned
5dkpk00	07 May, 2016	3.90.226.10	Assigned
5dkpK00	07 May, 2016	3.90.226.10	Assigned
5dkpl00	07 May, 2016	3.90.226.10	Assigned
5dkpL00	07 May, 2016	3.90.226.10	Assigned
5dkpm00	07 May, 2016	3.90.226.10	Assigned
5dkpM00	07 May, 2016	3.90.226.10	Assigned
5dkpn00	07 May, 2016	3.90.226.10	Assigned
5dkpN00	07 May, 2016	3.90.226.10	Assigned

UniProtKB Entries (28)

Accession	Gene ID	Taxon	Description
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit
Q9JZ38	CLPP_NEIMB	Neisseria meningitidis MC58	ATP-dependent Clp protease proteolytic subunit