PDB Information

PDB4ZUX
MethodX-RAY DIFFRACTION
Host OrganismEscherichia coli
Gene SourceXenopus laevis
Primary Citation
Structural basis for histone H2B deubiquitination by the SAGA DUB module.
Morgan, M.T., Haj-Yahya, M., Ringel, A.E., Bandi, P., Brik, A., Wolberger, C.
Science
HeaderHydrolase/Dna
Released2015-05-17
Resolution3.820
CATH Insert Date10 Apr, 2016

PDB Images (77)

PDB Prints

PDB Chains (40)

Chain ID Date inserted into CATH CATH Status
a 11 Apr, 2016 Chopped
A 11 Apr, 2016 Chopped
b 11 Apr, 2016 Holding pen
B 11 Apr, 2016 Chopped
c 11 Apr, 2016 Chopped
C 11 Apr, 2016 Chopped
d 11 Apr, 2016 Chopped
D 11 Apr, 2016 Chopped
e 11 Apr, 2016 Chopped
E 11 Apr, 2016 Chopped
f 11 Apr, 2016 Chopped
F 11 Apr, 2016 Chopped
g 11 Apr, 2016 Holding pen
G 11 Apr, 2016 Chopped
h 11 Apr, 2016 Chopped
H 11 Apr, 2016 Chopped
i 11 Apr, 2016 Chopped
I 11 Apr, 2016 Rejected
j 11 Apr, 2016 Chopped
J 11 Apr, 2016 Rejected
k 11 Apr, 2016 Chopped
K 11 Apr, 2016 Chopped
l 11 Apr, 2016 Holding pen
L 11 Apr, 2016 Chopped
m 11 Apr, 2016 Chopped
M 11 Apr, 2016 Chopped
n 11 Apr, 2016 Chopped
N 11 Apr, 2016 Chopped
O 11 Apr, 2016 Chopped
P 11 Apr, 2016 Chopped
Q 11 Apr, 2016 Chopped
R 11 Apr, 2016 Chopped
S 11 Apr, 2016 Rejected
T 11 Apr, 2016 Rejected
U 11 Apr, 2016 Chopped
V 11 Apr, 2016 Chopped
W 11 Apr, 2016 Holding pen
X 11 Apr, 2016 Chopped
Y 11 Apr, 2016 Chopped
Z 11 Apr, 2016 Chopped

CATH Domains (36)

Domain ID Date inserted into CATH Superfamily CATH Status
4zuxa00 03 May, 2016 1.10.246.140 Assigned
4zuxA00 03 May, 2016 1.10.20.10 Assigned
4zuxB00 03 May, 2016 1.10.20.10 Assigned
4zuxc00 02 May, 2016 Holding pen
4zuxC00 02 May, 2016 1.10.20.10 Assigned
4zuxd00 02 May, 2016 Holding pen
4zuxD00 02 May, 2016 1.10.20.10 Assigned
4zuxE00 02 May, 2016 1.10.20.10 Assigned
4zuxe01 02 May, 2016 3.30.40.10 Assigned
4zuxe02 02 May, 2016 3.90.70.10 Assigned
4zuxf00 02 May, 2016 1.10.246.140 Assigned
4zuxF00 02 May, 2016 1.10.20.10 Assigned
4zuxG00 03 May, 2016 1.10.20.10 Assigned
4zuxh00 03 May, 2016 Holding pen
4zuxH00 03 May, 2016 1.10.20.10 Assigned
4zuxi00 03 May, 2016 Holding pen
4zuxj01 03 May, 2016 3.30.40.10 Assigned
4zuxj02 03 May, 2016 3.90.70.10 Assigned
4zuxk00 03 May, 2016 1.10.246.140 Assigned
4zuxK00 03 May, 2016 1.10.20.10 Assigned
4zuxL00 03 May, 2016 1.10.20.10 Assigned
4zuxm00 03 May, 2016 Holding pen
4zuxM00 03 May, 2016 1.10.20.10 Assigned
4zuxn00 03 May, 2016 Holding pen
4zuxN00 03 May, 2016 1.10.20.10 Assigned
4zuxO00 03 May, 2016 1.10.20.10 Assigned
4zuxP00 03 May, 2016 1.10.20.10 Assigned
4zuxQ00 03 May, 2016 1.10.20.10 Assigned
4zuxR00 03 May, 2016 1.10.20.10 Assigned
4zuxU01 03 May, 2016 3.30.40.10 Assigned
4zuxU02 03 May, 2016 3.90.70.10 Assigned
4zuxV00 03 May, 2016 1.10.246.140 Assigned
4zuxX00 03 May, 2016 Holding pen
4zuxY00 03 May, 2016 Holding pen
4zuxZ01 03 May, 2016 3.30.40.10 Assigned
4zuxZ02 03 May, 2016 3.90.70.10 Assigned

UniProtKB Entries (36)

Accession Gene ID Taxon Description
P53165 SGF73_YEAST Saccharomyces cerevisiae S288C SAGA-associated factor 73
P62799 H4_XENLA Xenopus laevis Histone H4
P0CG47 UBB_HUMAN Homo sapiens Polyubiquitin-B
P84233 H32_XENLA Xenopus laevis Histone H3.2
P53165 SGF73_YEAST Saccharomyces cerevisiae S288C SAGA-associated factor 73
P06897 H2A1_XENLA Xenopus laevis Histone H2A type 1
A6ZWK1 SGF11_YEAS7 Saccharomyces cerevisiae YJM789 SAGA-associated factor 11
P50102 UBP8_YEAST Saccharomyces cerevisiae S288C Ubiquitin carboxyl-terminal hydrolase 8
P53165 SGF73_YEAST Saccharomyces cerevisiae S288C SAGA-associated factor 73
Q6WNK7 SUS1_YEAST Saccharomyces cerevisiae S288C Transcription and mRNA export factor SUS1
P02281 H2B11_XENLA Xenopus laevis Histone H2B 1.1
P62799 H4_XENLA Xenopus laevis Histone H4
P06897 H2A1_XENLA Xenopus laevis Histone H2A type 1
A6ZWK1 SGF11_YEAS7 Saccharomyces cerevisiae YJM789 SAGA-associated factor 11
P0CG47 UBB_HUMAN Homo sapiens Polyubiquitin-B
P50102 UBP8_YEAST Saccharomyces cerevisiae S288C Ubiquitin carboxyl-terminal hydrolase 8
Q6WNK7 SUS1_YEAST Saccharomyces cerevisiae S288C Transcription and mRNA export factor SUS1
Q6WNK7 SUS1_YEAST Saccharomyces cerevisiae S288C Transcription and mRNA export factor SUS1
A6ZWK1 SGF11_YEAS7 Saccharomyces cerevisiae YJM789 SAGA-associated factor 11
P0CG47 UBB_HUMAN Homo sapiens Polyubiquitin-B
P02281 H2B11_XENLA Xenopus laevis Histone H2B 1.1
P06897 H2A1_XENLA Xenopus laevis Histone H2A type 1
A6ZWK1 SGF11_YEAS7 Saccharomyces cerevisiae YJM789 SAGA-associated factor 11
P0CG47 UBB_HUMAN Homo sapiens Polyubiquitin-B
P84233 H32_XENLA Xenopus laevis Histone H3.2
P84233 H32_XENLA Xenopus laevis Histone H3.2
P50102 UBP8_YEAST Saccharomyces cerevisiae S288C Ubiquitin carboxyl-terminal hydrolase 8
P53165 SGF73_YEAST Saccharomyces cerevisiae S288C SAGA-associated factor 73
P50102 UBP8_YEAST Saccharomyces cerevisiae S288C Ubiquitin carboxyl-terminal hydrolase 8
P02281 H2B11_XENLA Xenopus laevis Histone H2B 1.1
P06897 H2A1_XENLA Xenopus laevis Histone H2A type 1
Q6WNK7 SUS1_YEAST Saccharomyces cerevisiae S288C Transcription and mRNA export factor SUS1
P02281 H2B11_XENLA Xenopus laevis Histone H2B 1.1
P62799 H4_XENLA Xenopus laevis Histone H4
P62799 H4_XENLA Xenopus laevis Histone H4
P84233 H32_XENLA Xenopus laevis Histone H3.2