PDB 4ifd
PDB Information
| PDB | 4IFD |
| Method | X-RAY DIFFRACTION |
| Host Organism | Escherichia coli |
| Gene Source | Saccharomyces cerevisiae |
| Primary Citation | Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex.
Nature
|
| Header | Hydrolase/Rna |
| Released | 2012-12-14 |
| Resolution | 2.810 |
| CATH Insert Date | 28 Mar, 2013 |
PDB Images (33)
4ifd
PDB 4ifd
4ifdA
PDB Chain 4ifdA
4ifdB
PDB Chain 4ifdB
4ifdC
PDB Chain 4ifdC
4ifdD
PDB Chain 4ifdD
4ifdE
PDB Chain 4ifdE
4ifdF
PDB Chain 4ifdF
4ifdG
PDB Chain 4ifdG
4ifdH
PDB Chain 4ifdH
4ifdI
PDB Chain 4ifdI
4ifdJ
PDB Chain 4ifdJ
4ifdK
PDB Chain 4ifdK
4ifdR
PDB Chain 4ifdR
4ifdA00
CATH Domain 4ifdA00
4ifdB00
CATH Domain 4ifdB00
4ifdC00
CATH Domain 4ifdC00
4ifdD00
CATH Domain 4ifdD00
4ifdE00
CATH Domain 4ifdE00
4ifdF00
CATH Domain 4ifdF00
4ifdG01
CATH Domain 4ifdG01
4ifdG02
CATH Domain 4ifdG02
4ifdG03
CATH Domain 4ifdG03
4ifdH01
CATH Domain 4ifdH01
4ifdH02
CATH Domain 4ifdH02
4ifdI01
CATH Domain 4ifdI01
4ifdI02
CATH Domain 4ifdI02
4ifdJ01
CATH Domain 4ifdJ01
4ifdJ02
CATH Domain 4ifdJ02
4ifdJ03
CATH Domain 4ifdJ03
4ifdJ04
CATH Domain 4ifdJ04
4ifdJ05
CATH Domain 4ifdJ05
4ifdK01
CATH Domain 4ifdK01
4ifdK02
CATH Domain 4ifdK02
PDB Prints
PDB Chains (12)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| A | 28 Mar, 2013 | Chopped |
| B | 28 Mar, 2013 | Chopped |
| C | 28 Mar, 2013 | Chopped |
| D | 28 Mar, 2013 | Chopped |
| E | 28 Mar, 2013 | Chopped |
| F | 28 Mar, 2013 | Chopped |
| G | 28 Mar, 2013 | Chopped |
| H | 28 Mar, 2013 | Chopped |
| I | 28 Mar, 2013 | Chopped |
| J | 28 Mar, 2013 | Chopped |
| K | 28 Mar, 2013 | Chopped |
| R | 28 Mar, 2013 | Rejected |
CATH Domains (20)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 4ifdA00 | 14 Jun, 2013 | 3.30.230.70 | Assigned |
| 4ifdB00 | 10 Apr, 2013 | 3.30.230.70 | Assigned |
| 4ifdC00 | 02 Aug, 2013 | 3.30.230.70 | Assigned |
| 4ifdD00 | 25 Apr, 2013 | 3.30.230.70 | Assigned |
| 4ifdE00 | 14 Aug, 2013 | 3.30.230.70 | Assigned |
| 4ifdF00 | 02 Aug, 2013 | 3.30.230.70 | Assigned |
| 4ifdG01 | 01 Jul, 2013 | 2.40.50.100 | Assigned |
| 4ifdG02 | 01 Jul, 2013 | 2.40.50.140 | Assigned |
| 4ifdG03 | 01 Jul, 2013 | 3.30.1370.10 | Assigned |
| 4ifdH01 | 25 Oct, 2013 | 2.40.50.100 | Assigned |
| 4ifdH02 | 25 Oct, 2013 | Holding pen | |
| 4ifdI01 | 23 Oct, 2013 | 2.40.50.880 | Assigned |
| 4ifdI02 | 23 Oct, 2013 | 2.40.50.140 | Assigned |
| 4ifdJ01 | 18 Nov, 2013 | Cathedral cath submit | |
| 4ifdJ02 | 18 Nov, 2013 | Holding pen | |
| 4ifdJ03 | 18 Nov, 2013 | 2.40.50.700 | Assigned |
| 4ifdJ04 | 18 Nov, 2013 | Holding pen | |
| 4ifdJ05 | 18 Nov, 2013 | 2.40.50.140 | Assigned |
| 4ifdK01 | 25 Oct, 2013 | 1.20.5.220 | Assigned |
| 4ifdK02 | 25 Oct, 2013 | 6.10.250.2660 | Assigned |
UniProtKB Entries (11)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| Q12277 | RRP42_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP42 |
| P46948 | RRP41_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component SKI6 |
| Q05636 | RRP45_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP45 |
| Q08162 | RRP44_YEAST | Saccharomyces cerevisiae S288C | Exosome complex exonuclease DIS3 |
| Q08285 | RRP40_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP40 |
| P25359 | RRP43_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP43 |
| P53859 | CSL4_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component CSL4 |
| P53256 | RRP46_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP46 |
| P48240 | MTR3_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component MTR3 |
| Q12149 | RRP6_YEAST | Saccharomyces cerevisiae S288C | Exosome complex exonuclease RRP6 |
| P38792 | RRP4_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP4 |
