# STOCKHOLM 1.0
#=GF ID 4.10.80.390/FF/000001
#=GF DE ORF1a polyprotein
#=GF AC 4.10.80.390/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 35.665
#=GS Q04561/14-64      AC Q04561
#=GS Q04561/14-64      OS Lelystad virus
#=GS Q04561/14-64      DE Replicase polyprotein 1ab
#=GS Q04561/14-64      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; 
#=GS Q04561/14-64      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS A0MD28/14-64      AC A0MD28
#=GS A0MD28/14-64      OS PRRSV SD 01-08
#=GS A0MD28/14-64      DE Replicase polyprotein 1ab
#=GS A0MD28/14-64      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0MD28/14-64      DR EC; 2.7.7.48; 3.4.19.12; 3.6.4.12; 3.6.4.13; 
#=GS A0A0U2M4P4/14-64  AC A0A0U2M4P4
#=GS A0A0U2M4P4/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U2M4P4/14-64  DE Polyprotein 1a
#=GS A0A0U2M4P4/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRL0/14-64  AC A0A1P8NRL0
#=GS A0A1P8NRL0/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRL0/14-64  DE ORF1a
#=GS A0A1P8NRL0/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRJ8/14-64  AC A0A1P8NRJ8
#=GS A0A1P8NRJ8/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRJ8/14-64  DE ORF1a
#=GS A0A1P8NRJ8/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0K2DRE0/14-64  AC A0A0K2DRE0
#=GS A0A0K2DRE0/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0K2DRE0/14-64  DE ORF1a
#=GS A0A0K2DRE0/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A140GJK3/14-64  AC A0A140GJK3
#=GS A0A140GJK3/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A140GJK3/14-64  DE Pp1a
#=GS A0A140GJK3/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A0U3AH00/14-64  AC A0A0U3AH00
#=GS A0A0U3AH00/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A0U3AH00/14-64  DE Polyprotein 1a
#=GS A0A0U3AH00/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS E9P7Y0/14-64      AC E9P7Y0
#=GS E9P7Y0/14-64      OS Porcine reproductive and respiratory syndrome virus
#=GS E9P7Y0/14-64      DE ORF1a polyprotein
#=GS E9P7Y0/14-64      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS P0DJZ9/14-64      AC P0DJZ9
#=GS P0DJZ9/14-64      OS Lelystad virus
#=GS P0DJZ9/14-64      DE Replicase polyprotein 1TF
#=GS P0DJZ9/14-64      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Variarterivirinae; Betaarterivirus; Eurpobartevirus; Betaarterivirus suid 1; 
#=GS A0A068CNV7/14-64  AC A0A068CNV7
#=GS A0A068CNV7/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A068CNV7/14-64  DE NSP1b
#=GS A0A068CNV7/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS A0A1P8NRK3/14-64  AC A0A1P8NRK3
#=GS A0A1P8NRK3/14-64  OS Porcine reproductive and respiratory syndrome virus
#=GS A0A1P8NRK3/14-64  DE ORF1a
#=GS A0A1P8NRK3/14-64  DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS D0V789/14-64      AC D0V789
#=GS D0V789/14-64      OS Porcine reproductive and respiratory syndrome virus
#=GS D0V789/14-64      DE Replicase polyprotein 1a
#=GS D0V789/14-64      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GS P0DJY0/14-64      AC P0DJY0
#=GS P0DJY0/14-64      OS PRRSV SD 01-08
#=GS P0DJY0/14-64      DE Truncated polyprotein 1aTF
#=GS P0DJY0/14-64      DR ORG; Viruses; Nidovirales; Arnidovirineae; Arteriviridae; Porcine reproductive and respiratory syndrome virus; 
#=GF SQ 14
Q04561/14-64              ARVFWNAGQVFCTRCLSARSLLSPELQDTDLGAVGLFYKPRDKLHWKVPIG
A0MD28/14-64              ARVFWNAGQVFCTRCLSARPLLSPELQDTDLGVVGLFYKPKDKIHWKVPIG
A0A0U2M4P4/14-64          ARVFWNAGQVFCTRCLSARSLLSPELQDPGLGAIGLFYKPKDKLHWKVPVG
A0A1P8NRL0/14-64          ARVFWNAGQVFCTRCLSARSLLSPELQDPDLAAIGLFYKPKDKIHWRVPIG
A0A1P8NRJ8/14-64          ARVFWNAGQVFCTRCLSARSLLSPELQDTDLAAIGLFYKPKNKLHWKVPIG
A0A0K2DRE0/14-64          ARVFWSAGQVFCTRCLSARPLLPPELQDPGLGAIGLFYKPKDKLHWKVPVG
A0A140GJK3/14-64          ARVFWNAGQVFCTRCLSARSLLLPELQDTNLGAIGLFYKPRDKLHWKVPIG
A0A0U3AH00/14-64          ARVFWNAGQVFCTRCLSARSLLSPELQDSDLGAVGLFYKPKDKLHWKVPVG
E9P7Y0/14-64              ARVFWNAGQVFCTRCLSARSLLSPELQETDLAAIGLFYKPKDKLHWKVPIG
P0DJZ9/14-64              ARVFWNAGQVFCTRCLSARSLLSPELQDTDLGAVGLFYKPRDKLHWKVPIG
A0A068CNV7/14-64          ARVFWNAGQVFCTRCLSARSLLSPELQDTDLGAVGLFYKPRDKLHWKVPIG
A0A1P8NRK3/14-64          ARVFWNAGQVFCTRCLSARPLLSPELQDTDLGAVGLFYKPKDKIHWKVPIG
D0V789/14-64              ARVFWNAGQVFCTRCLSARSLLPPDLQDTDLGAVGLFYKPRDKLHWKVPIG
P0DJY0/14-64              ARVFWNAGQVFCTRCLSARPLLSPELQDTDLGVVGLFYKPKDKIHWKVPIG
#=GC scorecons            999997999999999999969969899866967799999978969989979
#=GC scorecons_70         **********************_*****_**********************
#=GC scorecons_80         *******************_**_*****__*_*_*********_*******
#=GC scorecons_90         *****_*************_**_*****__*___******_**_*****_*
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