# STOCKHOLM 1.0 #=GF ID 4.10.260.20/FF/000001 #=GF DE NADP-reducing hydrogenase subunit HndD #=GF AC 4.10.260.20/FF/000001 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 94.046 #=GS Q46508/526-585 AC Q46508 #=GS Q46508/526-585 OS Desulfovibrio fructosivorans #=GS Q46508/526-585 DE NADP-reducing hydrogenase subunit HndD #=GS Q46508/526-585 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio fructosivorans; #=GS Q46508/526-585 DR GO; GO:0050583; #=GS Q46508/526-585 DR EC; 1.12.1.3; #=GS Q8EAI1/43-106 AC Q8EAI1 #=GS Q8EAI1/43-106 OS Shewanella oneidensis MR-1 #=GS Q8EAI1/43-106 DE Periplasmic [Fe-Fe] hydrogenase small subunit HydB #=GS Q8EAI1/43-106 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella oneidensis; #=GS Q8EAI1/43-106 DR GO; GO:0016730; #=GS Q3ZA52/514-572 AC Q3ZA52 #=GS Q3ZA52/514-572 OS Dehalococcoides mccartyi 195 #=GS Q3ZA52/514-572 DE [Fe] hydrogenase, large subunit HymC, putative #=GS Q3ZA52/514-572 DR ORG; Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides; Dehalococcoides mccartyi; #=GS Q3ZA52/514-572 DR GO; GO:0008901; GO:0009375; #=GS Q8ABI6/528-588 AC Q8ABI6 #=GS Q8ABI6/528-588 OS Bacteroides thetaiotaomicron VPI-5482 #=GS Q8ABI6/528-588 DE NADH:ubiquinone oxidoreductase subunit #=GS Q8ABI6/528-588 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS A5I2X0/521-577 AC A5I2X0 #=GS A5I2X0/521-577 OS Clostridium botulinum A str. Hall #=GS A5I2X0/521-577 DE Putative catalytic subunit of iron-only hydrogenase #=GS A5I2X0/521-577 DR ORG; Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium botulinum; #=GS Q9WY44/543-608 AC Q9WY44 #=GS Q9WY44/543-608 OS Thermotoga maritima MSB8 #=GS Q9WY44/543-608 DE NADP-reducing hydrogenase, subunit D, putative #=GS Q9WY44/543-608 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; #=GS G4FHB5/517-582 AC G4FHB5 #=GS G4FHB5/517-582 OS Thermotoga maritima MSB8 #=GS G4FHB5/517-582 DE Periplasmic [Fe] hydrogenase large subunit #=GS G4FHB5/517-582 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; #=GS B5YH28/529-589 AC B5YH28 #=GS B5YH28/529-589 OS Thermodesulfovibrio yellowstonii DSM 11347 #=GS B5YH28/529-589 DE Hydrogenase-1 #=GS B5YH28/529-589 DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio yellowstonii; #=GS A2EA13/480-554 AC A2EA13 #=GS A2EA13/480-554 OS Trichomonas vaginalis #=GS A2EA13/480-554 DE Iron only hydrogenase large subunit, C-terminal domain containing protein #=GS A2EA13/480-554 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS B8CGB6/527-585 AC B8CGB6 #=GS B8CGB6/527-585 OS Thalassiosira pseudonana #=GS B8CGB6/527-585 DE Nadp-reducing hydrogenase #=GS B8CGB6/527-585 DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; #=GS A0A1H7XXB1/528-588 AC A0A1H7XXB1 #=GS A0A1H7XXB1/528-588 OS Bacteroides sp. AR20 #=GS A0A1H7XXB1/528-588 DE NAD(P)-dependent iron-only hydrogenase catalytic subunit #=GS A0A1H7XXB1/528-588 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. AR20; #=GS R7KYX9/528-588 AC R7KYX9 #=GS R7KYX9/528-588 OS Bacteroides thetaiotaomicron CAG:40 #=GS R7KYX9/528-588 DE NADH:ubiquinone oxidoreductase subunit #=GS R7KYX9/528-588 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron CAG:40; #=GS G7Q9G4/526-585 AC G7Q9G4 #=GS G7Q9G4/526-585 OS Desulfovibrio sp. FW1012B #=GS G7Q9G4/526-585 DE Hydrogenase, Fe-only #=GS G7Q9G4/526-585 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio sp. FW1012B; #=GS C4XGF9/527-585 AC C4XGF9 #=GS C4XGF9/527-585 OS Desulfovibrio magneticus RS-1 #=GS C4XGF9/527-585 DE Fe hydrogenase #=GS C4XGF9/527-585 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio magneticus; #=GS A2D900/404-470 AC A2D900 #=GS A2D900/404-470 OS Trichomonas vaginalis #=GS A2D900/404-470 DE TvhydB protein, putative #=GS A2D900/404-470 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A2EKS1/338-404 AC A2EKS1 #=GS A2EKS1/338-404 OS Trichomonas vaginalis #=GS A2EKS1/338-404 DE TvhydB protein, putative #=GS A2EKS1/338-404 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A2DQE9/405-468 AC A2DQE9 #=GS A2DQE9/405-468 OS Trichomonas vaginalis #=GS A2DQE9/405-468 DE Iron hydrogenase #=GS A2DQE9/405-468 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A2DJT6/483-557 AC A2DJT6 #=GS A2DJT6/483-557 OS Trichomonas vaginalis #=GS A2DJT6/483-557 DE Iron only hydrogenase large subunit, C-terminal domain containing protein #=GS A2DJT6/483-557 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A2FQN6/531-590 AC A2FQN6 #=GS A2FQN6/531-590 OS Trichomonas vaginalis #=GS A2FQN6/531-590 DE 64kDa iron hydrogenase, putative #=GS A2FQN6/531-590 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A2FCW4/533-591 AC A2FCW4 #=GS A2FCW4/533-591 OS Trichomonas vaginalis #=GS A2FCW4/533-591 DE 64kDa iron hydrogenase, putative #=GS A2FCW4/533-591 DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; #=GS A0A0P0FC27/528-588 AC A0A0P0FC27 #=GS A0A0P0FC27/528-588 OS Bacteroides thetaiotaomicron #=GS A0A0P0FC27/528-588 DE Hydrogenase, Fe-only #=GS A0A0P0FC27/528-588 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS A0A139JW79/528-588 AC A0A139JW79 #=GS A0A139JW79/528-588 OS Bacteroides thetaiotaomicron #=GS A0A139JW79/528-588 DE Hydrogenases, Fe-only #=GS A0A139JW79/528-588 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS A0A0M0A4E6/521-577 AC A0A0M0A4E6 #=GS A0A0M0A4E6/521-577 OS Clostridium botulinum #=GS A0A0M0A4E6/521-577 DE NADH:ubiquinone oxidoreductase #=GS A0A0M0A4E6/521-577 DR ORG; Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium botulinum; #=GS A0A175M447/521-577 AC A0A175M447 #=GS A0A175M447/521-577 OS Clostridium botulinum B2 433 #=GS A0A175M447/521-577 DE NADH:ubiquinone oxidoreductase #=GS A0A175M447/521-577 DR ORG; Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium botulinum; #=GS A0A0V8M4I1/514-572 AC A0A0V8M4I1 #=GS A0A0V8M4I1/514-572 OS Dehalococcoides mccartyi #=GS A0A0V8M4I1/514-572 DE Ferredoxin #=GS A0A0V8M4I1/514-572 DR ORG; Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides; Dehalococcoides mccartyi; #=GS D2BG78/514-572 AC D2BG78 #=GS D2BG78/514-572 OS Dehalococcoides mccartyi VS #=GS D2BG78/514-572 DE [Fe] hydrogenase, Hym C subunit #=GS D2BG78/514-572 DR ORG; Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides; Dehalococcoides mccartyi; #=GF SQ 26 Q46508/526-585 --DVELLKKRTQVLYAEDAGKPLR---KSHENPYIIELYEKFLGKPLS-ERSHQLLHTHYFKRQRL------------- Q8EAI1/43-106 ERRNEYIKARSQGLYKDDSLAKTR---VSHANPAVEKYYKEFGGEPLG-HMSHELLHTHFVDRTKLSS----------- Q3ZA52/514-572 --DSTLKKKRGEALYEEDRNMAKR---CSHHNPSVEKIYKDYLEKPLG-KRSHKLLHTEYTSRPV-------------- Q8ABI6/528-588 -GNSDVLYARANALYREDANKPLR---KSHDNPYIQKLYEEYLGKPLG-EKSEMLLHTHYFNKSID------------- A5I2X0/521-577 --DTNILKKRTEALYKEDSNKEIR---KSHENPYIKKLYEEYLGKPYG-EKAHELLHTKYRVR---------------- Q9WY44/543-608 --DPEILRKRAEAIYTIDERMTLR---KSHENPAIKKLYEEYLEHPLS-HKAHELLHTYYEDRSRKKRLAVK------- G4FHB5/517-582 --DPEILRKRAEAIYTIDERMTLR---KSHENPAIKKLYEEYLEHPLS-HKAHELLHTYYEDRSRKKRLAVK------- B5YH28/529-589 -TTVEKREMRIAGIYERDRKMPLR---KSHENPEIQAIYKEFLKEPLG-HLSHELLHTHYTPRGKK------------- A2EA13/480-554 -HNKKNALPRTEAIYQMDESKPDR--PTPHNNKALLKIYDDFIGNPYD-DFAQSLFHTTFAQQNTPILEMKRKVHTLPI B8CGB6/527-585 SDDKDILKRRMAGIYSIDKNAPIR---KSHENKEVQQLYKDFLSFPLS-EISERLLHTSYAPR---------------- A0A1H7XXB1/528-588 -GNSDVLYARANALYREDANKPLR---KSHDNPYIQKLYEEYLGKPLG-EKSEMLLHTHYFNKSID------------- R7KYX9/528-588 -GNSDVLYARANALYREDANKPLR---KSHDNPYIQKLYEEYLGKPLG-EKSEMLLHTHYFNKSID------------- G7Q9G4/526-585 --DVELLKLRTQVLYDEDAGKPLR---KSHQNPYIIELYEKFLGKPLS-EKSHHLLHTHYFKRQRL------------- C4XGF9/527-585 ---IELLKLRTQVLYAEDAGKPLR---KSHQNPYIIELYEKFLGKPLS-EKSHHLLHTHYFKRQRL------------- A2D900/404-470 AKTKAAMNKRLDATYRIDRASKYR---TPQDNTQLQDLYNAYLGGKFGHGLAHEYFHTHFKPQPIGAKKN--------- A2EKS1/338-404 AKTKAAMNKRLDATYRIDRASKYR---TPQDNTQLQELYNTYLGGKFGHGMAHEIFHTHFKPQPIGAKKN--------- A2DQE9/405-468 AKTKKAVQARLNATYSIDKSSKHR---TSQDNPQLLQLYKESFEGKFGGHVAHHLLHTHYKNRKVNP------------ A2DJT6/483-557 -LKKDILQARINSLYAIDKQKIAEGKSTTNENTQLLKMYRDFVGAPYS-ARVKQLFHTWYTDRSLKRTQLGY--YNYHY A2FQN6/531-590 --NMMSLDNRLAAIYNIDAKMECR---KSHENPLIKGIYKEFLGEPNG-HLAHELLHTHYKHHPKF------------- A2FCW4/533-591 ---RVSLDNRLAAIYNIDAKMECR---KSHENPLIKGVYKEFLGKPNS-HLAHELLHTHFKHHPKW------------- A0A0P0FC27/528-588 -GNSDVLYARANALYREDANKPLR---KSHDNPYIQKLYEEYLGKPLG-EKSEMLLHTHYFNKSID------------- A0A139JW79/528-588 -GNSDVLYARANALYREDANKPLR---KSHDNPYIQKLYEEYLGKPLG-EKSEMLLHTHYFNKSID------------- A0A0M0A4E6/521-577 --DTNILKKRTEALYKEDSNKEIR---KSHENPYIKKLYEEYLGKPYG-EKAHELLHTKYRVR---------------- A0A175M447/521-577 --DTNILKKRTEALYKEDSNKEIR---KSHENPYIKKLYEEYLGKPYG-EKAHELLHTKYRVR---------------- A0A0V8M4I1/514-572 --DSTLKKKRGEALYEEDRNMAKR---CSHHNPSVEKIYKDYLEKPLG-KRSHKLLHTEYTSRPV-------------- D2BG78/514-572 --DSSLKKKRGEALYEEDRNMPKR---CSHHNTSVEKIYADYLEKPLG-KRSHKLLHTEYTSRPV-------------- #=GC scorecons 0043435349346593494443380004775963635695566647560435647799473363210000000000000 #=GC scorecons_70 _________*__*_*__*_____*____**_*__*___*__**__*________****_*__*________________ #=GC scorecons_80 _________*____*__*_____*_____*_*______*______*________****_*___________________ #=GC scorecons_90 _________*____*__*_____*_______*______*_________________**_____________________ //