# STOCKHOLM 1.0
#=GF ID 3.10.20.540/FF/000002
#=GF DE ORF1a polyprotein
#=GF AC 3.10.20.540/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 11.905
#=GS K9N7C7/1476-1537      AC K9N7C7
#=GS K9N7C7/1476-1537      OS Betacoronavirus England 1
#=GS K9N7C7/1476-1537      DE Replicase polyprotein 1ab
#=GS K9N7C7/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K9N7C7/1476-1537      DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS M1RUQ1/1476-1537      AC M1RUQ1
#=GS M1RUQ1/1476-1537      OS Human betacoronavirus 2c England-Qatar/2012
#=GS M1RUQ1/1476-1537      DE ORF1a
#=GS M1RUQ1/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS M1RUQ1/1476-1537      DR EC; 3.4.19.12; 3.4.22.69; 
#=GS A0A1W6ASU8/1472-1533  AC A0A1W6ASU8
#=GS A0A1W6ASU8/1472-1533  OS Bat coronavirus
#=GS A0A1W6ASU8/1472-1533  DE ORF1a protein
#=GS A0A1W6ASU8/1472-1533  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Coronavirinae; Bat coronavirus; 
#=GS K9N638/1476-1537      AC K9N638
#=GS K9N638/1476-1537      OS Betacoronavirus England 1
#=GS K9N638/1476-1537      DE Replicase polyprotein 1a
#=GS K9N638/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K9N638/1476-1537      DR EC; 3.4.19.12; 3.4.22.69; 
#=GS A0A0U2GPI9/1476-1537  AC A0A0U2GPI9
#=GS A0A0U2GPI9/1476-1537  OS Middle East respiratory syndrome-related coronavirus
#=GS A0A0U2GPI9/1476-1537  DE Polyprotein ORF1ab
#=GS A0A0U2GPI9/1476-1537  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS M4STU1/1476-1537      AC M4STU1
#=GS M4STU1/1476-1537      OS Human betacoronavirus 2c Jordan-N3/2012
#=GS M4STU1/1476-1537      DE ORF1ab protein
#=GS M4STU1/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K0BWD0/1476-1537      AC K0BWD0
#=GS K0BWD0/1476-1537      OS Human betacoronavirus 2c EMC/2012
#=GS K0BWD0/1476-1537      DE ORF1ab
#=GS K0BWD0/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS V9TU12/1476-1537      AC V9TU12
#=GS V9TU12/1476-1537      OS Middle East respiratory syndrome-related coronavirus
#=GS V9TU12/1476-1537      DE Orf1a
#=GS V9TU12/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K4LC41/1476-1537      AC K4LC41
#=GS K4LC41/1476-1537      OS Human betacoronavirus 2c EMC/2012
#=GS K4LC41/1476-1537      DE ORF1a
#=GS K4LC41/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS V9TU05/1476-1537      AC V9TU05
#=GS V9TU05/1476-1537      OS Middle East respiratory syndrome-related coronavirus
#=GS V9TU05/1476-1537      DE Orf1a
#=GS V9TU05/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS S5PWH2/1482-1543      AC S5PWH2
#=GS S5PWH2/1482-1543      OS Coronavirus Neoromicia/PML-PHE1/RSA/2011
#=GS S5PWH2/1482-1543      DE ORF1ab polyprotein
#=GS S5PWH2/1482-1543      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS A0A075Q443/1482-1543  AC A0A075Q443
#=GS A0A075Q443/1482-1543  OS Coronavirus Neoromicia/PML-PHE1/RSA/2011
#=GS A0A075Q443/1482-1543  DE ORF1a polyprotein
#=GS A0A075Q443/1482-1543  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A0I8/842-903        AC W6A0I8
#=GS W6A0I8/842-903        OS Middle East respiratory syndrome-related coronavirus
#=GS W6A0I8/842-903        DE ORF1a
#=GS W6A0I8/842-903        DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS T2BBN7/149-210        AC T2BBN7
#=GS T2BBN7/149-210        OS Middle East respiratory syndrome-related coronavirus
#=GS T2BBN7/149-210        DE ORF1ab
#=GS T2BBN7/149-210        DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A0I2/146-207        AC W6A0I2
#=GS W6A0I2/146-207        OS Middle East respiratory syndrome-related coronavirus
#=GS W6A0I2/146-207        DE ORF1a
#=GS W6A0I2/146-207        DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A941/1476-1537      AC W6A941
#=GS W6A941/1476-1537      OS Middle East respiratory syndrome-related coronavirus
#=GS W6A941/1476-1537      DE ORF1a
#=GS W6A941/1476-1537      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS T2BBD9/63-124         AC T2BBD9
#=GS T2BBD9/63-124         OS Middle East respiratory syndrome-related coronavirus
#=GS T2BBD9/63-124         DE ORF1a
#=GS T2BBD9/63-124         DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A040/842-903        AC W6A040
#=GS W6A040/842-903        OS Middle East respiratory syndrome-related coronavirus
#=GS W6A040/842-903        DE ORF1a
#=GS W6A040/842-903        DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A0R5/181-242        AC W6A0R5
#=GS W6A0R5/181-242        OS Middle East respiratory syndrome-related coronavirus
#=GS W6A0R5/181-242        DE ORF1a
#=GS W6A0R5/181-242        DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS A0A2D0YGC2/1476-1537  AC A0A2D0YGC2
#=GS A0A2D0YGC2/1476-1537  OS Middle East respiratory syndrome-related coronavirus
#=GS A0A2D0YGC2/1476-1537  DE 1AB polyprotein
#=GS A0A2D0YGC2/1476-1537  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GF SQ 20
K9N7C7/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
M1RUQ1/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
A0A1W6ASU8/1472-1533          DSRTAQQLTIEVLVTVDGVNFRTVVLNNKSSYRSQLGCVFYNGADISDTIPDEKQNGCSLYL
K9N638/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
A0A0U2GPI9/1476-1537          DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
M4STU1/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
K0BWD0/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
V9TU12/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
K4LC41/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
V9TU05/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
S5PWH2/1482-1543              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNSYRSQLGCVFFNGADISDTIPDEKQHGCSLYL
A0A075Q443/1482-1543          DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNSYRSQLGCVFFNGADISDTIPDEKQHGCSLYL
W6A0I8/842-903                DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
T2BBN7/149-210                DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
W6A0I2/146-207                DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
W6A941/1476-1537              DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
T2BBD9/63-124                 DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
W6A040/842-903                DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
W6A0R5/181-242                DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
A0A2D0YGC2/1476-1537          DSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRSQLGCVFFNGADISDTIPDEKQNGHSLYL
#=GC scorecons                99997999999999999999999999999659999999997999999999999996959999
#=GC scorecons_70             ******************************_**************************_****
#=GC scorecons_80             ****_************************__************************_*_****
#=GC scorecons_90             ****_************************__*********_**************_*_****
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