# STOCKHOLM 1.0
#=GF ID 2.40.50.1060/FF/000002
#=GF DE DNA-directed RNA polymerase
#=GF AC 2.40.50.1060/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 85.961
#=GS Q8H1F8/86-195      AC Q8H1F8
#=GS Q8H1F8/86-195      OS Arabidopsis thaliana
#=GS Q8H1F8/86-195      DE DNA-directed RNA polymerase
#=GS Q8H1F8/86-195      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178W5P2/86-195  AC A0A178W5P2
#=GS A0A178W5P2/86-195  OS Arabidopsis thaliana
#=GS A0A178W5P2/86-195  DE Uncharacterized protein
#=GS A0A178W5P2/86-195  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS E0CPL7/86-233      AC E0CPL7
#=GS E0CPL7/86-233      OS Vitis vinifera
#=GS E0CPL7/86-233      DE Uncharacterized protein
#=GS E0CPL7/86-233      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS B9GDH8/86-234      AC B9GDH8
#=GS B9GDH8/86-234      OS Oryza sativa Japonica Group
#=GS B9GDH8/86-234      DE Os12g0533600 protein
#=GS B9GDH8/86-234      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS B9H4U5/86-230      AC B9H4U5
#=GS B9H4U5/86-230      OS Populus trichocarpa
#=GS B9H4U5/86-230      DE Uncharacterized protein
#=GS B9H4U5/86-230      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS K7LFW8/86-232      AC K7LFW8
#=GS K7LFW8/86-232      OS Glycine max
#=GS K7LFW8/86-232      DE Uncharacterized protein
#=GS K7LFW8/86-232      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS B8A0V9/109-257     AC B8A0V9
#=GS B8A0V9/109-257     OS Zea mays
#=GS B8A0V9/109-257     DE DNA-directed RNA polymerases
#=GS B8A0V9/109-257     DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS I1I2T1/86-232      AC I1I2T1
#=GS I1I2T1/86-232      OS Brachypodium distachyon
#=GS I1I2T1/86-232      DE Uncharacterized protein
#=GS I1I2T1/86-232      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS A0A445FWG1/86-232  AC A0A445FWG1
#=GS A0A445FWG1/86-232  OS Glycine soja
#=GS A0A445FWG1/86-232  DE Uncharacterized protein
#=GS A0A445FWG1/86-232  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GS A0A0E0RI71/86-234  AC A0A0E0RI71
#=GS A0A0E0RI71/86-234  OS Oryza rufipogon
#=GS A0A0E0RI71/86-234  DE Uncharacterized protein
#=GS A0A0E0RI71/86-234  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0D3HV98/86-234  AC A0A0D3HV98
#=GS A0A0D3HV98/86-234  OS Oryza barthii
#=GS A0A0D3HV98/86-234  DE Uncharacterized protein
#=GS A0A0D3HV98/86-234  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS I1R6V2/86-234      AC I1R6V2
#=GS I1R6V2/86-234      OS Oryza glaberrima
#=GS I1R6V2/86-234      DE Uncharacterized protein
#=GS I1R6V2/86-234      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0E0MN61/86-235  AC A0A0E0MN61
#=GS A0A0E0MN61/86-235  OS Oryza punctata
#=GS A0A0E0MN61/86-235  DE Uncharacterized protein
#=GS A0A0E0MN61/86-235  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; 
#=GS C6T3P4/86-232      AC C6T3P4
#=GS C6T3P4/86-232      OS Glycine max
#=GS C6T3P4/86-232      DE Uncharacterized protein
#=GS C6T3P4/86-232      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS B8BM96/86-234      AC B8BM96
#=GS B8BM96/86-234      OS Oryza sativa Indica Group
#=GS B8BM96/86-234      DE Uncharacterized protein
#=GS B8BM96/86-234      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GF SQ 15
Q8H1F8/86-195              FVEGKIVKISPESIHVIVLGFSAAVITDVDIREEFKYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEV-MHIAGSLLPENTGCVKWLEKKSEEAL-PTDRDHKRRKL-----------------------------------------
A0A178W5P2/86-195          FVEGKIVKISPESIHVIVLGFSAAVITDVDIREEFKYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEV-MHIAGSLLPENTGCVKWLEKKSEEAL-PTDRDHKRRKL-----------------------------------------
E0CPL7/86-233              LIEGKVVKLAQESIHIVVLGFSSAIITDEEIRGEFKYKIKHGEAVFVSRSHKRHVIKVGTMIRFLVKSLDEEI-LHISGSLNPPHTGSILWLDKKLEDAS-PSSRSTKKRRENG---ESREMQEHDTVDGGVFSLDNSHHIKKSKKRKISEES
B9GDH8/86-234              ILEGKVELLGKESIHAIVLGVFSAAIMADDINEKFKFKRKGDGGKFISRSDRHHVIRKGSMIRFSVKRVDTEMNCHITGSLLPPHTGSMPWLSTHDAEYASEISSGTRRPSNVGIKI--KNEQDHKTSDNEDSVINSERPHKKSRKRAWEE--
B9H4U5/86-230              LLEGKVVKITRESIHCIVLGFSSAIITDENIRNELKYKAKHGEGVYVSRYHKRHVIKVGAVIRFEVKSLDEEI-LHISGSLIPANTGSVHWLDKYFVDAAIDSNKETKTEE------E-MEMQEQITVGGETLSFVNDHEIKKSKKRRRAEDQ
K7LFW8/86-232              LLEGKVVKVTQESIHVVVLGFSSAIITEKDIREEFVCKTKRGQEVYASRSHKQHVIKVGTMIRFLVKSFDEEI-LHVYGSLVPDHTGSIYWLDKNLEADS-HVYRSKKKRRIVP---E-RIMLEQDAVDGELSTLDIVQKSKKSKKQKHQEES
B8A0V9/109-257             ILEGMVEMIGKESIHAIVLGVFSVAIMSEDI--KFKFKWKSDGGKFVSLTDKKHVIERGTMIRFSVKRVDTEMSCHITGSLIPPHTGCMRWLSVHDPKYASELKSGESRSRDTSIKIE-QNEQEHRILKNEDGMVKSERPY-KSRKRGRHIEK
I1I2T1/86-232              MLEGKVEMLGKESIHVVVLGVFSAAIMADDIPQSFRFKRRGHGGKFISQLDNQHVIKKGSMIRFSVKGVDTEMNCHINGSLMPPHTGSMVWLSVHDAEYASEINSGKRKSK--GIKIE-QNVQDDTTVNNEDSVVNSERPH-KSRKRTVAE--
A0A445FWG1/86-232          LLEGKVVKVTQESIHVVVLGFSSAIISEKDIREEFVCKTKRGQEVYVSRSHKRHVIKVGTMIRFLVKSFDEEI-LHVYGSLVPDHTGSIYWLDKNLEVDS-HSDRSEKKRRIVP---E-RIMLEQDAVDGELSTLNIGQKSKKSKKQKHQEES
A0A0E0RI71/86-234          ILEGKVELLGKESIHAIVLGVFSAAIMADDINEKFKFKRKGDGGKFISRSDRHHVIRKGSMIRFSVKRVDTEMNCHITGSLLPPHTGSMPWLSTHDAEYASEISSGTRRPSNVGIKI--KNEQDHKTSDNEDSVINSERPHKKSRKRAWEE--
A0A0D3HV98/86-234          ILEGKVELLGKESIHAIVLGVFSAAIMADDINEKFKFKRKGDGGKFISRSDRHHVIRKGSMIRFSVKRVDTEMNCHITGSLLPPHTGSMPWLSTHDAEYASEISSGTRRPSNVGIKI--KNEQDHKTSDNEDSVINSERPHKKSRKRALEE--
I1R6V2/86-234              ILEGKVELLGKESIHAIVLGVFSAAIMADDINEKFKFKRKGDGGKFISRSDRHHVIRKGSMIRFSVKRVDTEMNCHITGSLLPPHTGSMPWLSTHDAEYASEISSGTRRPSNVGIKI--KNEQDHKTSDNEDSVINSERPHKKSRKRALEE--
A0A0E0MN61/86-235          ILEGKVELLGKESIHAIVLGVFSAAIMSDDINEKFKFKRKGDGGKFISRSDRHHVIRKGSMIRFSVKRVDTEMNCHITGSLLPPHTGSMPWLSTHDAEYASEISSGTRRPRNVGIKIE-KNEQGHRTLDNEDGVIDPEQPLKKSRKRALEE--
C6T3P4/86-232              LLEGKVVKVTQESIHVVVLGFSSAIISEKDIREEFVCKTKRGQEVYVSRSHKRHVIKVGTMIRFLVKSFDEEI-LHVYGSLVPDHTGSIYWLDKNLEVDS-HSDRSEKKRRIVP---E-RIMLEQDAVDGELSTLNIGQKSKKSKKQKHQEES
B8BM96/86-234              ILEGKVELLGKESIHAIVLGVFSAAIMADDINEKFKFKRKGDGGKFISRSDRHHVIRKGSMIRFSVKRVDTEMNCHITGSLLPPHTGSMPWLSTHDAEYASEISSGTRRPSNVGIKI--KNEQDHKTSDNEDSVINSERPHKKSRKRALEE--
#=GC scorecons             569977545449999579995578595447945585673745564769765659776395879739755959614974999594699663995453453514445546644222111203323442434352333323322355454212410
#=GC scorecons_70          _*****_____****_****__**_*___**___*__*_*___*_*****_*_****_*_****_**__*_*___**_***_*_****__**_______________**____________________________________________
#=GC scorecons_80          __****_____****_****__**_*___**___*__*_*_____*_**____***__*_****_**__*_*___**_***_*__**___**_____________________________________________________________
#=GC scorecons_90          __**_______****__***___*_*____*___*____________*_____*____*_*_*__*___*_*___*__***_*__**___**_____________________________________________________________
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