# STOCKHOLM 1.0
#=GF ID 2.130.10.10/FF/001620
#=GF DE Flagellar inner dynein arm I1 intermediate chain IC140
#=GF AC 2.130.10.10/FF/001620
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 83.983
#=GS A8J3B6/416-562_626-705  AC A8J3B6
#=GS A8J3B6/416-562_626-705  OS Chlamydomonas reinhardtii
#=GS A8J3B6/416-562_626-705  DE Flagellar inner dynein arm I1 intermediate chain IC140
#=GS A8J3B6/416-562_626-705  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A8J3B6/416-562_626-705  DR GO; GO:0005515; GO:0036156; GO:0036159; GO:0060294; 
#=GS Q386T2/225-357_413-494  AC Q386T2
#=GS Q386T2/225-357_413-494  OS Trypanosoma brucei brucei TREU927
#=GS Q386T2/225-357_413-494  DE Uncharacterized protein
#=GS Q386T2/225-357_413-494  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q386T2/225-357_413-494  DR GO; GO:0005737; GO:0005930; GO:0060285; 
#=GS A0BKR7/173-311_357-439  AC A0BKR7
#=GS A0BKR7/173-311_357-439  OS Paramecium tetraurelia
#=GS A0BKR7/173-311_357-439  DE Uncharacterized protein
#=GS A0BKR7/173-311_357-439  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS E9ADE2/253-355_418-503  AC E9ADE2
#=GS E9ADE2/253-355_418-503  OS Leishmania major
#=GS E9ADE2/253-355_418-503  DE Uncharacterized protein
#=GS E9ADE2/253-355_418-503  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS E9ADE2/253-355_418-503  DR GO; GO:0005737; GO:0005930; GO:0060285; 
#=GS A0DXZ5/186-319_365-443  AC A0DXZ5
#=GS A0DXZ5/186-319_365-443  OS Paramecium tetraurelia
#=GS A0DXZ5/186-319_365-443  DE Uncharacterized protein
#=GS A0DXZ5/186-319_365-443  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A0CI96/220-354_400-472  AC A0CI96
#=GS A0CI96/220-354_400-472  OS Paramecium tetraurelia
#=GS A0CI96/220-354_400-472  DE Uncharacterized protein
#=GS A0CI96/220-354_400-472  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GF SQ 6
A8J3B6/416-562_626-705          LVQNEITNIFRDDLSSLNDEADGGGGGSRKETLVSEAQSFTHLTYSKNKVVSAIQWLPHR-----KGVVAVACTEAQSHAERVARMGRTAPAHILLWNFRD--PIHPELVLQSPWEVFSFQFNPLQPDLLTGGCYNGQVVLWDLSSEADRLSRRRFMTDTQFSHHQVVTDLQWLP-GVEISHRGKVTKLGEGSKECNFFATIAADGKVLFWDVRVEKL----LKKGKKADEL--LDLVWKP------------
Q386T2/225-357_413-494          -------PIYQDDFAMFSE--DYAIVGSRDDIVLIERGNYTHTT-MKDLRVSSISWRSSR---SKDDVVCIASVARHNLEQRIEAEKLCETVTNLVWDFAD--PMHPYALLEAPVEIQVVRFNPLRTNLIAGGAMNGQLFLWDLDKI-S-----Q-ASRMELSHRRAVHDIQWLPNGLECAFGGKQ----TVTQEGRQFVSLSDDGYMCVWDIRPEYLPADKLRKMKHQGRIGGEDFPWVP------------
A0BKR7/173-311_357-439          ------------NVLPSSD--LNGDQNAELTNVIKEIKSFSYLN-CKGKKIQCIQFQPSSQAIKSKYIVAESFVENLLFEERVISQLKSHKSLVVFWDFEDIHSIEPVLLLQSPLEILAFEFNPKDPNIIIGGAINGQVMLWDLSGT---------ALSVFASHKSPALALKWFPIGMEFDKKHFNHLILTTSQETYQFASISADGQILFWDTRL----IDKDSKKTQQDI---SSIPWKATYGIQLYRPEGG
E9ADE2/253-355_418-503          ---------------------------------------YVHSS-TKGRKVSGVSWRSGR---KRDHFVCVASIGLQTLPERLQANRRCESSVSLVWDLSD--PMHPRYLLEAPEEVQVLHFHPSEPNLVAGGSLNGQVFLWDLSKA-DCLQPFQ-QSRVELSHQGPVHDLQWLPDSLEFGFDGKQ----TVVKETHQFVTISEDGTMLVWDTRPQYLPQDKLRKIKHQSRSGGGEQPWV-------------
A0DXZ5/186-319_365-443          -----------------SE--QNGDQNAELTNVIKEIKSFSYLN-CKGKKIQCIQFQPTSQAIKSKYIVAESFVENLLFEERAIYQLKSHKSLIVFWDFEDIHSIEPVLLLQSPLEILSFEFNPKDPNIIVGGTINGQVMLWDLSGT---------ALSVFASHKNFVLAVKWFPIGMEFDKKHFNHLILTSSQETYQFASISSDGQILFWDTRL----IDKDSKKTQQDI---STIPWKATYGIQLYR----
A0CI96/220-354_400-472          ----------------LSE--QNGDQNAELTNVIKEIKSFSYLN-CKGKKIQCIQFQPTSQAIKSKYIVAESFVENLLFEERAIYQLKSHKSLIVFWDFEDIHSIEPVLLLQSPLEILSFEFNPKDPNIIVGGTINGQVMLWDLSGT---------ALSVFASHKNFVL-------GCEM--KHFNHLILTSSQETYQFASISSDGQILFWDTRL----IDKDSKKTQQDI---STIPWKATYGIQLYRPEG-
#=GC scorecons                  0000000000001000134002242233312243252247464403955465375545351113253595454553434479433324443533649773911565924796592963454969347766499349997499996430100000104345239953373344646164932244331121635694459557639935659959411202554492556530003436943111111110000
#=GC scorecons_70               _______________________________________*_*____*___*__*______________*___________**______________***_*___*_*__**__*_**____***__**___**__****_*****_________________**___*____*_*_*_*___________*___*___*__**_**____**_*__________*___*________**______________
#=GC scorecons_80               _______________________________________*______*______*______________*___________**______________*___*_____*___*__*_*_____*_*_______**__****_****__________________**___*__________*_______________*___*__*__**____**_*__________*_____________*______________
#=GC scorecons_90               ______________________________________________*_____________________*____________*______________*___*_____*___*__*_*_____*_*_______**__***__****__________________**______________*_______________*___*_____**____**_*__________*_____________*______________
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