# STOCKHOLM 1.0
#=GF ID 1.25.40.10/FF/001569
#=GF DE RNA polymerase-associated protein CTR9
#=GF AC 1.25.40.10/FF/001569
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 67.384
#=GS Q54Y92/310-397_432-523  AC Q54Y92
#=GS Q54Y92/310-397_432-523  OS Dictyostelium discoideum
#=GS Q54Y92/310-397_432-523  DE Developmental protein
#=GS Q54Y92/310-397_432-523  DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; 
#=GS Q54Y92/310-397_432-523  DR GO; GO:0006366; GO:0008023; 
#=GS Q03560/317-508          AC Q03560
#=GS Q03560/317-508          OS Caenorhabditis elegans
#=GS Q03560/317-508          DE RNA polymerase-associated protein CTR9
#=GS Q03560/317-508          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS F0ZXW1/308-493          AC F0ZXW1
#=GS F0ZXW1/308-493          OS Dictyostelium purpureum
#=GS F0ZXW1/308-493          DE Uncharacterized protein
#=GS F0ZXW1/308-493          DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium purpureum; 
#=GS A8XAB7/422-577          AC A8XAB7
#=GS A8XAB7/422-577          OS Caenorhabditis briggsae
#=GS A8XAB7/422-577          DE Protein CBG10075
#=GS A8XAB7/422-577          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5UIF9/489-639      AC A0A2G5UIF9
#=GS A0A2G5UIF9/489-639      OS Caenorhabditis nigoni
#=GS A0A2G5UIF9/489-639      DE Uncharacterized protein
#=GS A0A2G5UIF9/489-639      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2G5UHF6/519-669      AC A0A2G5UHF6
#=GS A0A2G5UHF6/519-669      OS Caenorhabditis nigoni
#=GS A0A2G5UHF6/519-669      DE Uncharacterized protein
#=GS A0A2G5UHF6/519-669      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 6
Q54Y92/310-397_432-523          --------HIKAESAYLIGRAFHATQRWQDAIQYYHQAVQ-KNPDLYLAQFGLGQIHIHNEDYDKAILCFEQVLSKQPNNYETLQILGSLYKHGSLYNK---------IKNVLKKATELNPNDSSNWFELGQVLESTEVSTALEAYEKGLNLL-KKDGIVPSLEIQNNIAVLRHQKGLLVEAEQTYLDIIKQSGYQLNQ-
Q03560/317-508                  --------SIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEHTLAHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQKGRDVLGKYLAVENDDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNNVGALYMSMKQYEKAEHHFKRAKERLEEQLNTD
F0ZXW1/308-493                  --------HIKAESSYLVGKALHATQRWSEALQFYHQAVL-KNPDFYLAQFGLGQIYIHNEDFDKAISCFENVLAKQPNNYETLQILGSLYKHGSLYKNSMNTAT---AANVLKKAIEINPNDYNNWFELAQILEISEVGAALEAYEKGLALL-KNENITPSLEILNNIAVLRHQKGLNSEAEQTYLDTIKQSGYELDQ-
A8XAB7/422-577                  HAASNDCDSIKAEAFYQMGRCRHTQGQYDGAYKYYYQARQANNQEHTLAHYGLGQMYIHRNEIEEAIKCFEVVHQRLPHNTDTMKILGSLYAHVQLADPARTNEARQKGRDVLAKYLNIEAEDCEACIDLAQLLESTDSKKSLELYERAIDLL------------------------------EAF--------------
A0A2G5UIF9/489-639              -----DCDSIKAEAFYQMGRCRHTQGQYDGAYKYYYQARQANNQEHTLAHYGLGQMYIHRNEIEEAIKCFEVVHQRLPHNTDTMKILGSLYAHVQLADPARTNEARQKGRDVLAKYLNIEAEDYEACIDLAQLLESTDSKKSLELYERAIDLL------------------------------EAF--------------
A0A2G5UHF6/519-669              -----DCDSIKAEAFYQMGRCRHTQGQYDGAYKYYYQARQANNQEHTLAHYGLGQMYIHRNEIEEAIKCFEVVHQRLPHNTDTMKILGSLYAHVQLADPARTNEARQKGRDVLAKYLNIEAEDYEACIDLAQLLESTDSKKSLELYERAIDLL------------------------------EAF--------------
#=GC scorecons                  00000111599995394597539655644594679699462594644996799996799556465993997394364959469669999995945935432323322245699494546545954555696959956644359959955649901110202112112211121111110012254711111111112110
#=GC scorecons_70               _________****__*__**__*_______*__*****____*_*__************__*_*_**_***_*__*_*_*_***_******_*__*_______________**_*_______*_____****_**_**____**_**____**________________________________*______________
#=GC scorecons_80               _________****__*__**__*_______*__**_**____*____**_*****_***______**_***_*____*_*__*__******_*__*_______________**_*_______*______*_*_**_______**_**____**________________________________*______________
#=GC scorecons_90               _________****__*__*___*_______*___*_**____*____**__****__**______**_**__*____*_*__*__******_*__*_______________**_*_______*______*_*_**_______**_**____**_______________________________________________
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