# STOCKHOLM 1.0 #=GF ID 1.20.1540.10/FF/000025 #=GF DE Putative rhomboid family #=GF AC 1.20.1540.10/FF/000025 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 89.641 #=GS Q9U2S3/557-720 AC Q9U2S3 #=GS Q9U2S3/557-720 OS Caenorhabditis elegans #=GS Q9U2S3/557-720 DE Rhomboid-like protein #=GS Q9U2S3/557-720 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS A0A0K3AV34/238-401 AC A0A0K3AV34 #=GS A0A0K3AV34/238-401 OS Caenorhabditis elegans #=GS A0A0K3AV34/238-401 DE Rhomboid-like protein #=GS A0A0K3AV34/238-401 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS H2KML1/907-1063 AC H2KML1 #=GS H2KML1/907-1063 OS Caenorhabditis elegans #=GS H2KML1/907-1063 DE Rhomboid-like protein #=GS H2KML1/907-1063 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS A0A0K3AXE4/590-746 AC A0A0K3AXE4 #=GS A0A0K3AXE4/590-746 OS Caenorhabditis elegans #=GS A0A0K3AXE4/590-746 DE Rhomboid-like protein #=GS A0A0K3AXE4/590-746 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS Q9U2V5/905-1061 AC Q9U2V5 #=GS Q9U2V5/905-1061 OS Caenorhabditis elegans #=GS Q9U2V5/905-1061 DE Rhomboid-like protein #=GS Q9U2V5/905-1061 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS A0A0K3AS30/307-464 AC A0A0K3AS30 #=GS A0A0K3AS30/307-464 OS Caenorhabditis elegans #=GS A0A0K3AS30/307-464 DE Rhomboid-like protein #=GS A0A0K3AS30/307-464 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS W4YMT5/543-694 AC W4YMT5 #=GS W4YMT5/543-694 OS Strongylocentrotus purpuratus #=GS W4YMT5/543-694 DE Uncharacterized protein #=GS W4YMT5/543-694 DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; #=GS A7RJJ9/279-431 AC A7RJJ9 #=GS A7RJJ9/279-431 OS Nematostella vectensis #=GS A7RJJ9/279-431 DE Predicted protein #=GS A7RJJ9/279-431 DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; #=GS T1G818/275-437 AC T1G818 #=GS T1G818/275-437 OS Helobdella robusta #=GS T1G818/275-437 DE Uncharacterized protein #=GS T1G818/275-437 DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; #=GS B3RN73/317-482 AC B3RN73 #=GS B3RN73/317-482 OS Trichoplax adhaerens #=GS B3RN73/317-482 DE Uncharacterized protein #=GS B3RN73/317-482 DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; #=GS T1EFA5/257-424 AC T1EFA5 #=GS T1EFA5/257-424 OS Helobdella robusta #=GS T1EFA5/257-424 DE Uncharacterized protein #=GS T1EFA5/257-424 DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; #=GS T1FVT7/507-672 AC T1FVT7 #=GS T1FVT7/507-672 OS Helobdella robusta #=GS T1FVT7/507-672 DE Uncharacterized protein #=GS T1FVT7/507-672 DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; #=GS A0A139WDD3/1236-1397 AC A0A139WDD3 #=GS A0A139WDD3/1236-1397 OS Tribolium castaneum #=GS A0A139WDD3/1236-1397 DE Inactive rhomboid protein 1-like Protein #=GS A0A139WDD3/1236-1397 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; #=GS D6WXI7/1229-1390 AC D6WXI7 #=GS D6WXI7/1229-1390 OS Tribolium castaneum #=GS D6WXI7/1229-1390 DE Inactive rhomboid protein 1-like Protein #=GS D6WXI7/1229-1390 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; #=GS B7QLY4/264-426 AC B7QLY4 #=GS B7QLY4/264-426 OS Ixodes scapularis #=GS B7QLY4/264-426 DE Rhomboid, putative #=GS B7QLY4/264-426 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; #=GS A0A369SD16/151-316 AC A0A369SD16 #=GS A0A369SD16/151-316 OS Trichoplax sp. H2 #=GS A0A369SD16/151-316 DE Inactive rhomboid protein 1 #=GS A0A369SD16/151-316 DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax sp. H2; #=GS H3F4C9/734-895 AC H3F4C9 #=GS H3F4C9/734-895 OS Pristionchus pacificus #=GS H3F4C9/734-895 DE Uncharacterized protein #=GS H3F4C9/734-895 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; #=GS A0A131YJJ6/477-639 AC A0A131YJJ6 #=GS A0A131YJJ6/477-639 OS Rhipicephalus appendiculatus #=GS A0A131YJJ6/477-639 DE Rhomboid #=GS A0A131YJJ6/477-639 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Rhipicephalus; Rhipicephalus appendiculatus; #=GS A8WMV2/888-1052 AC A8WMV2 #=GS A8WMV2/888-1052 OS Caenorhabditis briggsae #=GS A8WMV2/888-1052 DE Protein CBR-ROM-4 #=GS A8WMV2/888-1052 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; #=GS A0A131XZQ2/284-446 AC A0A131XZQ2 #=GS A0A131XZQ2/284-446 OS Ixodes ricinus #=GS A0A131XZQ2/284-446 DE Putative rhomboid family #=GS A0A131XZQ2/284-446 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes ricinus; #=GS A0A2A6BR98/829-990 AC A0A2A6BR98 #=GS A0A2A6BR98/829-990 OS Pristionchus pacificus #=GS A0A2A6BR98/829-990 DE Rom-3 #=GS A0A2A6BR98/829-990 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; #=GF SQ 21 Q9U2S3/557-720 --------NATLCSQV-NCFLGICGMIPFFSGDNPNQIYRLFTSLFIHAGVIHLALSMAFQMYFMAYQENLIGSKRMAILYFASGISGNLASAIFVPYYPTVGPSSAQCGVFSSVVVELWHFRHL---LDPFELKFQSIAHLIVTLLVLCIGLIPWIDNWSHLFGTIFGLITSIIV----- A0A0K3AV34/238-401 --------NATLCSQV-NCFLGICGMIPFFSGDNPNQIYRLFTSLFIHAGVIHLALSMAFQMYFMAYQENLIGSKRMAILYFASGISGNLASAIFVPYYPTVGPSSAQCGVFSSVVVELWHFRHL---LDPFELKFQSIAHLIVTLLVLCIGLIPWIDNWSHLFGTIFGLITSIIV----- H2KML1/907-1063 -------------SQV-NCFSGVCGMVPFFFGDNPNQFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFASGIGGNLASAIFVPYNPAVGPSSAQCGILAAVIVECCDNRRI---IK--EFKWALVQHLIVTLLVLCIGFIPWVDNWAHLFGTIFGLLTTIII----- A0A0K3AXE4/590-746 -------------SQV-NCFSGVCGMVPFFFGDNPNQFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFASGIGGNLASAIFVPYNPAVGPSSAQCGILAAVIVECCDNRRI---IK--EFKWALVQHLIVTLLVLCIGFIPWVDNWAHLFGTIFGLLTTIII----- Q9U2V5/905-1061 -------------SQV-NCFSGVCGMVPFFFGDNPNQFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFASGIGGNLASAIFVPYNPAVGPSSAQCGILAAVIVECCDNRRI---IK--EFKWALVQHLIVTLLVLCIGFIPWVDNWAHLFGTIFGLLTTIII----- A0A0K3AS30/307-464 ------------CSQV-NCFSGVCGMVPFFFGDNPNQFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFASGIGGNLASAIFVPYNPAVGPSSAQCGILAAVIVECCDNRRI---IK--EFKWALVQHLIVTLLVLCIGFIPWVDNWAHLFGTIFGLLTTIII----- W4YMT5/543-694 FVNGFFHEEATLCSQV----------------------LSKWSSHTAH--IFHCVLSFIMHMTILRDLEKLAGWFRIAIIYIFSGIGGNLTSAILIPYRAEVGPAGAQFGLLACLVVEVFQNWQI---LR--NPCKALLKLLAIIMVLFALGLLPWIDNFAHLGGFICGIFLSFIFLPYIC A7RJJ9/279-431 -----------------------CGMIPFLKQHVPDQIYRLWMAIFLHAGIIHLLCTLVFNFTILRDLERMAGWIRISIIYIFSGIGGYLISAILIPYQVEVGPSGSMFGIIACLFVELIQSWQM---VA--QPILALLKLCGVVFLLLVVGLLPYVDNFAHMAGFCFGFCLAFIFLPYVT T1G818/275-437 ----------TLCSQV-NCLEEICGMVPFLYEGRPDQIYRLFFSLFVHAGVVHLLVTVVFQLTIMRDLEKLAGTIRIATIYIVSGLGGCLASVIFLPHLVEAGPSGSQFGLLSCLFVEVIQNRMI---LK--QPCLAILKLSGLMLFLFLLGLMPMIDNFAHLFGFLFGFLLSFVLLPY-- B3RN73/317-482 ---------AFLCSQV-NCLESSCGLVKFLNPTVPDQFYRFWISLFLHAGLLHLGVTLLFNLIILKDFEKMAGWLRISIIYVLSGIGGNIISGILLPYHPEIGPSGSNFGIVACLFVEVFQSWQI---LK--RPVRAIGKLAVIVLVLFIFGLLPYVDNFSHFGGFIFGLFLAFAILPYVS T1EFA5/257-424 ----------NLCSQVKSCLSEICGMLPFYNETYPNQFYRLWTSLFLHAGILQLLITIIFQYFIMRDIERLLGWFRVCVIYIASGIAGSLASAIFLPYHVEAGPSGSQFGLLASLFVEVIYGWQL-GIVQ--SPCLVIFKLTSILIFLFIIGLFPWVDNYAHLFGFIFGFFISFALMPYAA T1FVT7/507-672 ---------AFLCSQV-SCIEETCGMLPFWNSNRPDQFYRLWLSLFIHAGVLQLLITILFQFFFMRDVEKMLGWHRTAFIYIMSGVVGSLASAIFVPYHVEAGPSGSQFGILSCLFVELINYWPF---LY--KPYIALIKLLLVLLLLFVIGLLPMVDNYAHLFGFIFGFLLSFSVMPHVE A0A139WDD3/1236-1397 ----------SLCSQV-SCLNDVCGMLPFYFAETPDQFYRLWTSLFLHAGVLQLAVTVLIQYFLMRDLEKLTGSLRIGIIYIGSGVAGNLASAIFVPYRADVGPAGSQFGLLACLIVEVLNSWPM---LK--HPNQALCKLLSITLVLFLIGLLPWVDNYAHLFGFVFGFLLSYALLP--- D6WXI7/1229-1390 ----------SLCSQV-SCLNDVCGMLPFYFAETPDQFYRLWTSLFLHAGVLQLAVTVLIQYFLMRDLEKLTGSLRIGIIYIGSGVAGNLASAIFVPYRADVGPAGSQFGLLACLIVEVLNSWPM---LK--HPNQALCKLLSITLVLFLIGLLPWVDNYAHLFGFVFGFLLSYALLP--- B7QLY4/264-426 ---------AALCSQV-SCLNDVCGMIPFVNPEVPDQFYRLWTSLFLHAGIFHLCITVIVQLFVMRDLEKLAGPVRTAVIYMCSGVAGNLASAIFVPYRAEVGPAGAQFGLLACLFVEVIHCWQM---LR--RPSSALLKLGGGAAVLFLLGLLPWVDNYAHVFGFVFGFLLSYALLP--- A0A369SD16/151-316 ---------AFLCSQV-NCLESSCGLVKFLNPTVPDQFYRFWISLFLHAGLLHLGVTLLFNLIILKDFEKMAGWLRISIIYVLSGIGGNIISGILLPYHPEIGPSGSNFGIVACLFVEVFQSWQI---LK--RPVRAIGKLAVIVLVLFVFGLLPYVDNFSHFGGFIFGLFLAFAILPYVS H3F4C9/734-895 ---------ASLCSQV-NCLHGICGMIPF--GDSPNQIYRLFTSIFLHAGLLHLAITIFFQMVFMRDLENYIGWKRMAFIYFISGMGGNLASAIFVPFNPEVGPSGALAGIVTTLFVDVFVNRDM---LQ--QPLLAIAQNGGWLAALFMIGLLPWVDNWAILFGTVFGLLATFVFLPD-- A0A131YJJ6/477-639 ---------AALCSQV-SCLNDVCGMIPFVNPEVPDQFYRLWTSLFLHAGIFHLSITVIVQLFVMRDLEKLAGPVRTAVIYMCSGVAGNLASAIFVPYRAEVGPAGSQFGLLACLFVEVIHCWQM---LK--RPSAALLKLGTGAAVLFLLGLLPWVDNYAHVFGFVFGFLLSYALLP--- A8WMV2/888-1052 -------ATKQYCDFV-NCFAGVCGMMPFF-GAYPNQFYRLFTSLFIHAGIIHLALSVGFQWWVMRDLEFMIGSKRMAILYFCSGIGGNLASAIFVPFNPAVGPSSALCGVMAAVVVDLYHHRQEMTLIS--EFSCALYQQLFVICVYLAFGLIPWIDNWAHLFGSIFGFLATIII----- A0A131XZQ2/284-446 ---------AALCSQV-SCLNDVCGMIPFVNPEVPDQFYRLWTSLFLHAGIFHLCITVIVQLFVMRDLEKLAGPVRTAVIYMCSGVAGNLASAIFVPYRAEVGPAGAQFGLLACLFVEVIHCWQM---LR--RPSSALLKLGGGAAVLFLLGLLPWVDNYAHVFGFVFGFLLSYALLP--- A0A2A6BR98/829-990 ---------ASLCSQV-NCLHGICGMIPF--GDSPNQIYRLFTSIFLHAGLLHLAITIFFQMVFMRDLENYIGWKRMAFIYFISGMGGNLASAIFVPFNPEVGPSGALAGIVTTLFVDVFVNRDM---LQ--QPLLAIAQNGGWLAALFMIGLLPWVDNWAILFGTVFGLLATFVFLPD-- #=GC scorecons 0000000002245777046423477756732333757588755868597765774565466445767695657339566695399659686979769745579966655966646598534454500064004532753544344456635976967995776595689654555533100 #=GC scorecons_70 _____________***__*____***_**_____*_*_***__***_***__**______*___***_*___*__*___**__***_***********___*****___*__*_*_**__________*_______*__________**__**_*_***_***_*_***____________ #=GC scorecons_80 _____________*_*_______**___*_____*_*_**___*_*_***__**__________*_*_*___*__*____*__**__*_*_****_**____**_____*______**__________________*______________**_*_***__*__*__**____________ #=GC scorecons_90 ______________________________________**___*___*____________________*______*____*__**__*_*_*_*__*_____**_____*______*__________________________________*__*__**_____*__**____________ //