# STOCKHOLM 1.0
#=GF ID 1.10.3970.10/FF/000002
#=GF DE Putative RNA polymerase II transcription factor B subunit 1-1
#=GF AC 1.10.3970.10/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 65.631
#=GS Q9M322/178-248      AC Q9M322
#=GS Q9M322/178-248      OS Arabidopsis thaliana
#=GS Q9M322/178-248      DE General transcription and DNA repair factor IIH subunit TFB1-3
#=GS Q9M322/178-248      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q3ECP0/182-253      AC Q3ECP0
#=GS Q3ECP0/182-253      OS Arabidopsis thaliana
#=GS Q3ECP0/182-253      DE General transcription and DNA repair factor IIH subunit TFB1-1
#=GS Q3ECP0/182-253      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A1P8ASX6/182-253  AC A0A1P8ASX6
#=GS A0A1P8ASX6/182-253  OS Arabidopsis thaliana
#=GS A0A1P8ASX6/182-253  DE BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
#=GS A0A1P8ASX6/182-253  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A1I9LP36/153-223  AC A0A1I9LP36
#=GS A0A1I9LP36/153-223  OS Arabidopsis thaliana
#=GS A0A1I9LP36/153-223  DE BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
#=GS A0A1I9LP36/153-223  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A1P8AST3/182-253  AC A0A1P8AST3
#=GS A0A1P8AST3/182-253  OS Arabidopsis thaliana
#=GS A0A1P8AST3/182-253  DE BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
#=GS A0A1P8AST3/182-253  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q6ZC85/190-264      AC Q6ZC85
#=GS Q6ZC85/190-264      OS Oryza sativa Japonica Group
#=GS Q6ZC85/190-264      DE Os08g0338200 protein
#=GS Q6ZC85/190-264      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS B9G0F0/191-264      AC B9G0F0
#=GS B9G0F0/191-264      OS Oryza sativa Japonica Group
#=GS B9G0F0/191-264      DE Uncharacterized protein
#=GS B9G0F0/191-264      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS H3ERC9/1-95         AC H3ERC9
#=GS H3ERC9/1-95         OS Pristionchus pacificus
#=GS H3ERC9/1-95         DE DNA-directed RNA polymerase subunit
#=GS H3ERC9/1-95         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A0D3AP91/181-250  AC A0A0D3AP91
#=GS A0A0D3AP91/181-250  OS Brassica oleracea var. oleracea
#=GS A0A0D3AP91/181-250  DE Uncharacterized protein
#=GS A0A0D3AP91/181-250  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS V4KR97/185-254      AC V4KR97
#=GS V4KR97/185-254      OS Eutrema salsugineum
#=GS V4KR97/185-254      DE Uncharacterized protein
#=GS V4KR97/185-254      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A1J3DM19/186-255  AC A0A1J3DM19
#=GS A0A1J3DM19/186-255  OS Noccaea caerulescens
#=GS A0A1J3DM19/186-255  DE Putative RNA polymerase II transcription factor B subunit 1-1
#=GS A0A1J3DM19/186-255  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS I1I1K5/191-264      AC I1I1K5
#=GS I1I1K5/191-264      OS Brachypodium distachyon
#=GS I1I1K5/191-264      DE Uncharacterized protein
#=GS I1I1K5/191-264      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS A0A078ISP3/181-250  AC A0A078ISP3
#=GS A0A078ISP3/181-250  OS Brassica napus
#=GS A0A078ISP3/181-250  DE BnaCnng26250D protein
#=GS A0A078ISP3/181-250  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS D7KN16/184-253      AC D7KN16
#=GS D7KN16/184-253      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KN16/184-253      DE Uncharacterized protein
#=GS D7KN16/184-253      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A3P6DJU4/181-250  AC A0A3P6DJU4
#=GS A0A3P6DJU4/181-250  OS Brassica oleracea
#=GS A0A3P6DJU4/181-250  DE Uncharacterized protein
#=GS A0A3P6DJU4/181-250  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS I1QHV3/190-264      AC I1QHV3
#=GS I1QHV3/190-264      OS Oryza glaberrima
#=GS I1QHV3/190-264      DE Uncharacterized protein
#=GS I1QHV3/190-264      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0E0LTZ2/169-242  AC A0A0E0LTZ2
#=GS A0A0E0LTZ2/169-242  OS Oryza punctata
#=GS A0A0E0LTZ2/169-242  DE Uncharacterized protein
#=GS A0A0E0LTZ2/169-242  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; 
#=GS J3MS99/421-494      AC J3MS99
#=GS J3MS99/421-494      OS Oryza brachyantha
#=GS J3MS99/421-494      DE Uncharacterized protein
#=GS J3MS99/421-494      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; 
#=GS B8B9V0/191-264      AC B8B9V0
#=GS B8B9V0/191-264      OS Oryza sativa Indica Group
#=GS B8B9V0/191-264      DE Uncharacterized protein
#=GS B8B9V0/191-264      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS C3SAF5/191-264      AC C3SAF5
#=GS C3SAF5/191-264      OS Brachypodium distachyon
#=GS C3SAF5/191-264      DE Transcription factor related protein
#=GS C3SAF5/191-264      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS A0A078ILS6/182-251  AC A0A078ILS6
#=GS A0A078ILS6/182-251  OS Brassica napus
#=GS A0A078ILS6/182-251  DE BnaA02g14670D protein
#=GS A0A078ILS6/182-251  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A1J3F1D1/186-255  AC A0A1J3F1D1
#=GS A0A1J3F1D1/186-255  OS Noccaea caerulescens
#=GS A0A1J3F1D1/186-255  DE Putative RNA polymerase II transcription factor B subunit 1-1
#=GS A0A1J3F1D1/186-255  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GF SQ 22
Q9M322/178-248              ------------GIKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
Q3ECP0/182-253              -----------SGIKPSTDGRTNRVTFNLTPE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
A0A1P8ASX6/182-253          -----------SGIKPSTDGRTNRVTFNLTPE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
A0A1I9LP36/153-223          ------------GIKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
A0A1P8AST3/182-253          -----------SGIKPSTDGRTNRVTFNLTPE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
Q6ZC85/190-264              M---------LADVRPSADGRTNKVTFSLTTE--IIHQIFAEKPAVHRAFLDFVPKKMSEKDFWTKYF-RAEYLLRTKNTVAATAE--------A
B9G0F0/191-264              ----------LADVRPSADGRTNKVTFSLTTE--IIHQIFAEKPAVHRAFLDFVPKKMSEKDFWTKYF-RAEYLLRTKNTVAATAE--------A
H3ERC9/1-95                 MELQTSEDTFLVPPEESNDYDVFAEHFSISEHDGEINHLLSTNPPMRSIFSSLVPEKVDNVTFWMRYFYKLDLAEATESKKVIDKEIVPESVKRE
A0A0D3AP91/181-250          -------------IKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
V4KR97/185-254              -------------IKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
A0A1J3DM19/186-255          -------------IKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
I1I1K5/191-264              ----------LADVRPSADGQTNKVTFSLTNE--IIHQIFAEKPAVHRAFLDYVPKKLSEKDFWTKYC-RAEYLLRTKNTLAAKAE--------A
A0A078ISP3/181-250          -------------IKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
D7KN16/184-253              -------------IKPSTDGRTNRVTFNLTPE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
A0A3P6DJU4/181-250          -------------IKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
I1QHV3/190-264              M---------LADVRPSADGRTNKVTFSLTTE--IIHQIFAEKPAVHRAFLDFVPKKMSEKDFWTKYF-RAEYLLRTKNTVAATAE--------A
A0A0E0LTZ2/169-242          ----------LADVRPSADGRTNKVTFSLTTE--IIHQIFAEKPAVHRAFLDFVPKKMSEKDFWTKYF-RAEYLLRTKNTVAATAE--------A
J3MS99/421-494              ----------LADVRPSADGRTNKVTFSLTTE--IIHQIFAEKPAVHRAFLNFVPKKMSEKDFWTKYF-RAEYLLRTKNTVAAAAE--------A
B8B9V0/191-264              ----------LADVRPSADGRTNKVTFSLTTE--IIHQIFAEKPAVHRAFLDFVPKKMSEKDFWTKYF-RAEYLLRTKNTVAATAE--------A
C3SAF5/191-264              ----------LADVRPSADGQTNKVTFSLTNE--IIHQIFAEKPAVHRAFLDYVPKKLSEKDFWTKYC-RAEYLLRTKNTLAAKAE--------A
A0A078ILS6/182-251          -------------IKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
A0A1J3F1D1/186-255          -------------IKPSTDGRTNRVTFNLTSE--IIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYF-RAEYLYSTKNTAVAAAE---------
#=GC scorecons              00000000002225569596676566967747006947777679776579556994965766997797076766349776467469000000001
#=GC scorecons_70           _______________**_**_**_***_**_*__**_**********_**___**_**_*********_*****__****__*_**_________
#=GC scorecons_80           ________________*_*_______*_**_____*_****_****___*___**_*__*__**_***_*_*____***______*_________
#=GC scorecons_90           ________________*_*_______*________*_______*_____*___**_*_____**__*_________*________*_________
//