# STOCKHOLM 1.0
#=GF ID 1.10.287.4280/FF/000002
#=GF DE Transcription factor unc-3
#=GF AC 1.10.287.4280/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 74.479
#=GS Q93705/359-415      AC Q93705
#=GS Q93705/359-415      OS Caenorhabditis elegans
#=GS Q93705/359-415      DE Transcription factor unc-3
#=GS Q93705/359-415      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q93705/359-415      DR GO; GO:0000977; GO:0005634; GO:0010975; GO:0035035; GO:0040024; GO:0042802; GO:0043065; GO:0045944; 
#=GS E9G2B3/314-363      AC E9G2B3
#=GS E9G2B3/314-363      OS Daphnia pulex
#=GS E9G2B3/314-363      DE Uncharacterized protein
#=GS E9G2B3/314-363      DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS T1EFG6/379-427      AC T1EFG6
#=GS T1EFG6/379-427      OS Helobdella robusta
#=GS T1EFG6/379-427      DE Uncharacterized protein
#=GS T1EFG6/379-427      DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS H2Y658/322-376      AC H2Y658
#=GS H2Y658/322-376      OS Ciona savignyi
#=GS H2Y658/322-376      DE Uncharacterized protein
#=GS H2Y658/322-376      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona savignyi; 
#=GS H3FE37/168-223      AC H3FE37
#=GS H3FE37/168-223      OS Pristionchus pacificus
#=GS H3FE37/168-223      DE Uncharacterized protein
#=GS H3FE37/168-223      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS F6S2V8/324-376      AC F6S2V8
#=GS F6S2V8/324-376      OS Ciona intestinalis
#=GS F6S2V8/324-376      DE transcription factor protein isoform X2
#=GS F6S2V8/324-376      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A0A2G5T0H2/341-396  AC A0A2G5T0H2
#=GS A0A2G5T0H2/341-396  OS Caenorhabditis nigoni
#=GS A0A2G5T0H2/341-396  DE Uncharacterized protein
#=GS A0A2G5T0H2/341-396  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS G0MB66/354-409      AC G0MB66
#=GS G0MB66/354-409      OS Caenorhabditis brenneri
#=GS G0MB66/354-409      DE CBN-UNC-3 protein
#=GS G0MB66/354-409      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2H2HUP8/145-199  AC A0A2H2HUP8
#=GS A0A2H2HUP8/145-199  OS Caenorhabditis japonica
#=GS A0A2H2HUP8/145-199  DE Uncharacterized protein
#=GS A0A2H2HUP8/145-199  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A8X4H7/359-414      AC A8X4H7
#=GS A8X4H7/359-414      OS Caenorhabditis briggsae
#=GS A8X4H7/359-414      DE Protein CBR-UNC-3
#=GS A8X4H7/359-414      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5T0G7/353-408  AC A0A2G5T0G7
#=GS A0A2G5T0G7/353-408  OS Caenorhabditis nigoni
#=GS A0A2G5T0G7/353-408  DE Uncharacterized protein
#=GS A0A2G5T0G7/353-408  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2A6D2P5/407-462  AC A0A2A6D2P5
#=GS A0A2A6D2P5/407-462  OS Pristionchus pacificus
#=GS A0A2A6D2P5/407-462  DE Unc-3
#=GS A0A2A6D2P5/407-462  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS H2Y661/304-358      AC H2Y661
#=GS H2Y661/304-358      OS Ciona savignyi
#=GS H2Y661/304-358      DE Uncharacterized protein
#=GS H2Y661/304-358      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona savignyi; 
#=GS H2Y660/312-366      AC H2Y660
#=GS H2Y660/312-366      OS Ciona savignyi
#=GS H2Y660/312-366      DE Uncharacterized protein
#=GS H2Y660/312-366      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona savignyi; 
#=GF SQ 14
Q93705/359-415              AEPGIEYGFQRLQKLLPKYPGDPERLPKDQILKRAAELAEALYNRTSTESLSSYYH-T
E9G2B3/314-363              SEPTIDYGFHRLSKLVPRHPGDPEKLGKEIILKRAADLAEAVYAN----AMPRN----
T1EFG6/379-427              SEPTIDFGFQRLMKLVPRQPGDPERLSKEVILKRAADIAETAY-------LPRCFP--
H2Y658/322-376              NEPTLDYGFQRLLKTIPRHPGDPERLPKEIILKRAADVMEAVISRQY--ASPSQMH-P
H3FE37/168-223              TEPSIDFAFHRLAKLLPKYPGDPERLPKELILKRAAELAEALYNRPT--DLHTHYANY
F6S2V8/324-376              NEPTLDYGFQRLLKTVPRHPGDPERLPKEIILKRAADVMEAVISRQY--APPSQM---
A0A2G5T0H2/341-396          AEPGIEYGFQRLQKLLPKYPGDPERLPRDQILKRAAELAEALYNRTSTESLTNYYH--
G0MB66/354-409              TEPSIEYGFQRLQKLLPKYPGDPDRLPKDQILKRAAELAEALYNRTSTESLSTYYH--
A0A2H2HUP8/145-199          TEPSIEYGFQRLQKLLPKYPGDPERLPKDQILKRAAELAEALYNRTTSDSLSSYY---
A8X4H7/359-414              AEPGIEYGFQRLQKLLPKYPGDPERLPRDQILKRAAELAEALYNRTSTESLTNYYH--
A0A2G5T0G7/353-408          AEPGIEYGFQRLQKLLPKYPGDPERLPRDQILKRAAELAEALYNRTSTESLTNYYH--
A0A2A6D2P5/407-462          TEPSIDFAFHRLAKLLPKYPGDPERLPKELILKRAAELAEALYNRPT--DLHTHYANY
H2Y661/304-358              NEPTLDYGFQRLLKTIPRHPGDPERLPKEIILKRAADVMEAVISRQY--ASPSQMH-P
H2Y660/312-366              NEPTLDYGFQRLLKTIPRHPGDPERLPKEIILKRAADVMEAVISRQY--ASPSQMH-P
#=GC scorecons              4995677797993965976999988967749999997669855463200454444300
#=GC scorecons_70           _**_********_*__*************_********_**___*_____________
#=GC scorecons_80           _**___******_*__*__*******_*__******___**_________________
#=GC scorecons_90           _**_____*_**_*__*__*******____******___**_________________
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