# STOCKHOLM 1.0
#=GF ID 3.80.10.10/FF/000863
#=GF DE Class II major histocompatibility complex transactivator
#=GF AC 3.80.10.10/FF/000863
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 22.868
#=GS F1MG35/1029-1118      AC F1MG35
#=GS F1MG35/1029-1118      OS Bos taurus
#=GS F1MG35/1029-1118      DE Class II major histocompatibility complex transactivator
#=GS F1MG35/1029-1118      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS F6ZCE4/945-1030       AC F6ZCE4
#=GS F6ZCE4/945-1030       OS Monodelphis domestica
#=GS F6ZCE4/945-1030       DE Uncharacterized protein
#=GS F6ZCE4/945-1030       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS G3VW96/904-987        AC G3VW96
#=GS G3VW96/904-987        OS Sarcophilus harrisii
#=GS G3VW96/904-987        DE Class II major histocompatibility complex transactivator
#=GS G3VW96/904-987        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Dasyuromorphia; Dasyuridae; Sarcophilus; Sarcophilus harrisii; 
#=GS W5P7Y9/947-1036       AC W5P7Y9
#=GS W5P7Y9/947-1036       OS Ovis aries
#=GS W5P7Y9/947-1036       DE Uncharacterized protein
#=GS W5P7Y9/947-1036       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS L8J0C0/931-1020       AC L8J0C0
#=GS L8J0C0/931-1020       OS Bos mutus
#=GS L8J0C0/931-1020       DE MHC class II transactivator
#=GS L8J0C0/931-1020       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos mutus; 
#=GS A0A3Q1LZW6/1008-1097  AC A0A3Q1LZW6
#=GS A0A3Q1LZW6/1008-1097  OS Bos taurus
#=GS A0A3Q1LZW6/1008-1097  DE Class II major histocompatibility complex transactivator
#=GS A0A3Q1LZW6/1008-1097  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS A0A3Q1LQ73/937-1026   AC A0A3Q1LQ73
#=GS A0A3Q1LQ73/937-1026   OS Bos taurus
#=GS A0A3Q1LQ73/937-1026   DE Class II major histocompatibility complex transactivator
#=GS A0A3Q1LQ73/937-1026   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS A0A3Q1ME12/952-1041   AC A0A3Q1ME12
#=GS A0A3Q1ME12/952-1041   OS Bos taurus
#=GS A0A3Q1ME12/952-1041   DE Class II major histocompatibility complex transactivator
#=GS A0A3Q1ME12/952-1041   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GF SQ 8
F1MG35/1029-1118              AVRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDVGACKLAEALPAL
F6ZCE4/945-1030               -IRDLKKLEFALGPGLGPQGFPKLVKILAAFSSLQHLDLDTLSENKIGDEGVTQLSAIFPELKVLETLNLSQNCITDVGATELAKAL---
G3VW96/904-987                --RDLKKLEFALGPVLGPQGFPKLVKILAAFSSLQHLDLDTLSENKIGDEGVAQLSAIFPELKSLETLNLSQNNITDMGATELAKA----
W5P7Y9/947-1036               AVRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDVGACKLAEALPAL
L8J0C0/931-1020               AVRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDVGACKLAEALPAL
A0A3Q1LZW6/1008-1097          AVRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDVGACKLAEALPAL
A0A3Q1LQ73/937-1026           AVRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDVGACKLAEALPAL
A0A3Q1ME12/952-1041           AVRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDVGACKLAEALPAL
#=GC scorecons                239999999999995999949999999959959999999959999999999969999599699499999999959996995599594222
#=GC scorecons_70             __************_****_********_**_********_****************_**_**_*********_******__**_*____
#=GC scorecons_80             __************_****_********_**_********_***********_****_**_**_*********_***_**__**_*____
#=GC scorecons_90             __************_****_********_**_********_***********_****_**_**_*********_***_**__**_*____
//