# STOCKHOLM 1.0 #=GF ID 3.60.21.60/FF/000007 #=GF DE DNA polymerase alpha subunit B #=GF AC 3.60.21.60/FF/000007 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 74.834 #=GS A0A2K1JZ79/515-644 AC A0A2K1JZ79 #=GS A0A2K1JZ79/515-644 OS Physcomitrella patens #=GS A0A2K1JZ79/515-644 DE DNA polymerase alpha subunit B #=GS A0A2K1JZ79/515-644 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS A9T0B7/506-635 AC A9T0B7 #=GS A9T0B7/506-635 OS Physcomitrella patens #=GS A9T0B7/506-635 DE Predicted protein #=GS A9T0B7/506-635 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS Q0IP63/287-397 AC Q0IP63 #=GS Q0IP63/287-397 OS Oryza sativa Japonica Group #=GS Q0IP63/287-397 DE Os12g0242900 protein #=GS Q0IP63/287-397 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS H2KWP4/226-336 AC H2KWP4 #=GS H2KWP4/226-336 OS Oryza sativa Japonica Group #=GS H2KWP4/226-336 DE DNA polymerase alpha subunit B family protein, expressed #=GS H2KWP4/226-336 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS D7TAP9/516-621 AC D7TAP9 #=GS D7TAP9/516-621 OS Vitis vinifera #=GS D7TAP9/516-621 DE DNA polymerase alpha subunit B #=GS D7TAP9/516-621 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS I1MYI4/497-602 AC I1MYI4 #=GS I1MYI4/497-602 OS Glycine max #=GS I1MYI4/497-602 DE DNA polymerase alpha subunit B #=GS I1MYI4/497-602 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS U5G160/506-614 AC U5G160 #=GS U5G160/506-614 OS Populus trichocarpa #=GS U5G160/506-614 DE DNA polymerase alpha subunit B #=GS U5G160/506-614 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; #=GS A0A1D6IW08/474-579 AC A0A1D6IW08 #=GS A0A1D6IW08/474-579 OS Zea mays #=GS A0A1D6IW08/474-579 DE DNA polymerase alpha subunit B #=GS A0A1D6IW08/474-579 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS I1ITD1/516-621 AC I1ITD1 #=GS I1ITD1/516-621 OS Brachypodium distachyon #=GS I1ITD1/516-621 DE DNA polymerase alpha subunit B #=GS I1ITD1/516-621 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS A0A1W0VSD3/521-627 AC A0A1W0VSD3 #=GS A0A1W0VSD3/521-627 OS Sorghum bicolor #=GS A0A1W0VSD3/521-627 DE DNA polymerase alpha subunit B #=GS A0A1W0VSD3/521-627 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS A0A445HIE0/468-572 AC A0A445HIE0 #=GS A0A445HIE0/468-572 OS Glycine soja #=GS A0A445HIE0/468-572 DE DNA polymerase alpha subunit B #=GS A0A445HIE0/468-572 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS B4F916/518-623 AC B4F916 #=GS B4F916/518-623 OS Zea mays #=GS B4F916/518-623 DE DNA polymerase alpha subunit B #=GS B4F916/518-623 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6IW11/419-524 AC A0A1D6IW11 #=GS A0A1D6IW11/419-524 OS Zea mays #=GS A0A1D6IW11/419-524 DE DNA polymerase alpha 2 #=GS A0A1D6IW11/419-524 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A1D6IW09/506-616 AC A0A1D6IW09 #=GS A0A1D6IW09/506-616 OS Zea mays #=GS A0A1D6IW09/506-616 DE DNA polymerase alpha subunit B #=GS A0A1D6IW09/506-616 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS C5Z7Y0/517-623 AC C5Z7Y0 #=GS C5Z7Y0/517-623 OS Sorghum bicolor #=GS C5Z7Y0/517-623 DE DNA polymerase alpha subunit B #=GS C5Z7Y0/517-623 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS I1LNB2/496-600 AC I1LNB2 #=GS I1LNB2/496-600 OS Glycine max #=GS I1LNB2/496-600 DE DNA polymerase alpha subunit B #=GS I1LNB2/496-600 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GF SQ 16 A0A2K1JZ79/515-644 -PQGASSDRMTRLASHLLSQRSFYPLFPPPQSVPLDLSVAPESLDLSSSPDILLLSSNLAPFVKVLSLPADIQRQENREKVEKVKCICINPGYAARGMSGGTFTEIHLSSGDSNTELEPLHKRAQVKIVRV A9T0B7/506-635 -PQGASSDRMTRLASHLLSQRSFYPLFPPPQSVPLDLSVAPESLDLSSSPDILLLSSNLAPFVKVLSLPADIQRQENREKVEKVKCICINPGYAARGMSGGTFTEIHLSSGDSNTELEPLHKRAQVKIVRV Q0IP63/287-397 PPGEKHGDRIGRICTHILKQQSYYPLYPPPAGVPLDFSLANGALEIASAPDVLLLPSDLAPFVKVLSLD--------ESSEEPKRFICMNPGRLAKGIGGGTFVELNYNEDTDKTSASL------------ H2KWP4/226-336 PPGEKHGDRIGRICTHILKQQSYYPLYPPPAGVPLDFSLANGALEIASAPDVLLLPSDLAPFVKVLSLD--------ESSEEPKRFICMNPGRLAKGIGGGTFVELNYNEDTDKTSASL------------ D7TAP9/516-621 --------RMTTIANHILSQRSFYPLYPLAEGIPLDFSLAPEALEVSTIPDVLILPSDLASFVKVLSLG------GRNEGEELVKCICVNPGRLAKGEGGGHFVELNYQGSPDKTSASV-----------I I1MYI4/497-602 ----KPIDRLSRLANHILNQQSFYPLYPPAEGVPLDFSLAPEALQLSSIPDILILPSDIKYFVKVLS--------SENEGINHTKCIAVNPGRLAKGEGGGTFVELDYCGGSDQINAS------------- U5G160/506-614 PTDGTPSDRMSRLANHIISQRSFYPLYPPAEDVPLDFSLAPEALHINSIPDILILPSDMKYFMKVLTLG---------EGEEQRKCICINPGRLAKGEGGGTFAELNYQGSPDKMNAS------------- A0A1D6IW08/474-579 -----PGDRIGRLASHILKQQSYYPLYPPAPGVPLDLSLAKEALEIPSAPDVLLLPSDLAPFVKVLSLG--------EGSDDDRRFICVNPGRLAKGIGGGTFVELYYNEGIDKTNASI------------ I1ITD1/516-621 ----KPADRIGRLAKHILKQQSYYPLYPPAAGVPMDFSLAKEAFEISSPPDVLLLPSDLAPFVKVLSLN--------EGAEEQKWFVCVNPGRLAKGIGGGTFVELYYNEDTDKTNAF------------- A0A1W0VSD3/521-627 ----KPADRIGRLASHILKQQSYYPLYPSAAGVPLDFSLAKEALEISSAPDVLLLPSDLAPFVKVLSLG--------EGSDDQKRFICVNPGRLAKGIGGGTFVELYYNEGIDKTNASI------------ A0A445HIE0/468-572 ----KPIDRLSRLANHILNQQSFYPLYTPAESVPLDFSLAPEALQLSFVPDILILPSDIKYFVKVLS--------SENEGINHTKCIAINPGRLAKGEGGGTFVELDYCGASDQINA-------------- B4F916/518-623 -----PGDRIGRLASHILKQQSYYPLYPPAPGVPLDLSLAKEALEIPSAPDVLLLPSDLAPFVKVLSLG--------EGSDDDRRFICVNPGRLAKGIGGGTFVELYYNEGIDKTNASI------------ A0A1D6IW11/419-524 -----PGDRIGRLASHILKQQSYYPLYPPAPGVPLDLSLAKEALEIPSAPDVLLLPSDLAPFVKVLSLG--------EGSDDDRRFICVNPGRLAKGIGGGTFVELYYNEGIDKTNASI------------ A0A1D6IW09/506-616 PPGGKPGDRIGRLASHILKQQSYYPLYPPAPGVPLDLSLAKEALEIPSAPDVLLLPSDLAPFVKVLSLG--------EGSDDDRRFICVNPGRLAKGIGGGTFVELYYNEGIDKTNASI------------ C5Z7Y0/517-623 ----KPADRIGRLASHILKQQSYYPLYPSAAGVPLDFSLAKEALEISSAPDVLLLPSDLAPFVKVLSLG--------EGSDDQKRFICVNPGRLAKGIGGGTFVELYYNEGIDKTNASI------------ I1LNB2/496-600 ----KPIDRLSRLANHILNQQSFYPLYTPAESVPLDFSLAPEALQLSFVPDILILPSDIKYFVKVLS--------SENEGINHTKCIAINPGRLAKGEGGGTFVELDYCGASDQINA-------------- #=GC scorecons 01013537965877597849697999777645898969794778565649979697976659899985200000000454463365866999669794799896974645536565641000000000000 #=GC scorecons_70 _______**__***_***_***********__********_***___*_**********__******_________________*_***********_********_*____*_*_*______________ #=GC scorecons_80 _______**__***_***_*_********___****_***_*_*_____**_*_*_**___******___________________*__***__***__****_**_________________________ #=GC scorecons_90 ________*______*_*_*_*_***______****_*_*___*_____**_*_*_*____******___________________*__***__*_*__**_*_*__________________________ //