# STOCKHOLM 1.0
#=GF ID 3.40.800.20/FF/000024
#=GF DE Histone deacetylase 3
#=GF AC 3.40.800.20/FF/000024
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 59.908
#=GS Q09440/27-402      AC Q09440
#=GS Q09440/27-402      OS Caenorhabditis elegans
#=GS Q09440/27-402      DE Putative histone deacetylase 2
#=GS Q09440/27-402      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q09440/27-402      DR GO; GO:0000118; GO:0000122; GO:0003714; GO:0004407; GO:0006325; GO:0016575; GO:0042262; GO:0045138; 
#=GS Q09440/27-402      DR EC; 3.5.1.98; 
#=GS D4AEB0/1-283       AC D4AEB0
#=GS D4AEB0/1-283       OS Rattus norvegicus
#=GS D4AEB0/1-283       DE Histone deacetylase 3
#=GS D4AEB0/1-283       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS D4AEB0/1-283       DR GO; GO:0120162; 
#=GS A0A3B4A1G7/5-301   AC A0A3B4A1G7
#=GS A0A3B4A1G7/5-301   OS Periophthalmus magnuspinnatus
#=GS A0A3B4A1G7/5-301   DE Histone deacetylase 3
#=GS A0A3B4A1G7/5-301   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Periophthalmus; Periophthalmus magnuspinnatus; 
#=GS H3FKE1/1-332       AC H3FKE1
#=GS H3FKE1/1-332       OS Pristionchus pacificus
#=GS H3FKE1/1-332       DE Uncharacterized protein
#=GS H3FKE1/1-332       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS F6V5K8/3-301       AC F6V5K8
#=GS F6V5K8/3-301       OS Macaca mulatta
#=GS F6V5K8/3-301       DE Uncharacterized protein
#=GS F6V5K8/3-301       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS A0A3B1IWK0/1-289   AC A0A3B1IWK0
#=GS A0A3B1IWK0/1-289   OS Astyanax mexicanus
#=GS A0A3B1IWK0/1-289   DE Uncharacterized protein
#=GS A0A3B1IWK0/1-289   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Characiphysae; Characiformes; Characoidei; Characidae; Stethaprioninae; Astyanax; Astyanax mexicanus; 
#=GS A0A3P9A311/1-283   AC A0A3P9A311
#=GS A0A3P9A311/1-283   OS Esox lucius
#=GS A0A3P9A311/1-283   DE Uncharacterized protein
#=GS A0A3P9A311/1-283   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Esociformes; Esocidae; Esox; Esox lucius; 
#=GS A0A3Q3WV36/1-283   AC A0A3Q3WV36
#=GS A0A3Q3WV36/1-283   OS Mola mola
#=GS A0A3Q3WV36/1-283   DE Histone deacetylase 3
#=GS A0A3Q3WV36/1-283   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Euteleosteomorpha; Tetraodontiformes; Moloidei; Molidae; Mola; Mola mola; 
#=GS A0A261BRV0/25-400  AC A0A261BRV0
#=GS A0A261BRV0/25-400  OS Caenorhabditis latens
#=GS A0A261BRV0/25-400  DE Uncharacterized protein
#=GS A0A261BRV0/25-400  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A2G5UXC3/25-400  AC A0A2G5UXC3
#=GS A0A2G5UXC3/25-400  OS Caenorhabditis nigoni
#=GS A0A2G5UXC3/25-400  DE Histone deacetylase
#=GS A0A2G5UXC3/25-400  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8XHZ1/25-400      AC A8XHZ1
#=GS A8XHZ1/25-400      OS Caenorhabditis briggsae
#=GS A8XHZ1/25-400      DE Histone deacetylase
#=GS A8XHZ1/25-400      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS E3LGY9/25-400      AC E3LGY9
#=GS E3LGY9/25-400      OS Caenorhabditis remanei
#=GS E3LGY9/25-400      DE Histone deacetylase
#=GS E3LGY9/25-400      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GF SQ 12
Q09440/27-402              KKRNVAYYYHKDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQTVTPKLGLTMPDDVLRQFNIG--EDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGQY-FPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYLKLFESVISGVEENFNPEAIVLQCGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMDDE----------IPGTSLYSHYFTPRL-LRPNLVPKMNDANSAA-----YLASIEKETLACLRMIRGAPSVQ
D4AEB0/1-283               ------------------------------------------------------------------------------------------------SPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVISQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEE----------LP-YSEYFEYFAPDFTLHPDVSTRIENQNSRQ-----YLDQIRQTIFENLKMLNHAPSVQ
A0A3B4A1G7/5-301           ------------------------------------------------ENIWAQSD-------------------------------WFVLI---FSPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVDYYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEFVKSFKIPLLVLGGGGYTVRNVARCWTFETSLLVDESISDE----------LP-YSEYFEYFAPDFTLHPDVSTRIENQNSRQ-----YLEQIRQTVFENLKMLNHAPSVQ
H3FKE1/1-332               MRR----------------------------------------------LPYASSADLKRFHSEEYINFLEKISPQTVMYPGYDDIGQFHFG--EDCPVWDGIYDFCCLYTGGSLEGAVRLNHKKTDVVINWSGGLHHAKKHNASGFCYVNDIVIAILELLKYHQRVLYIDIDIHHGDGVQEAFNLTDRVMTVSFHKYGNHFFPGTGDMYDVGRETGRFYSVNVPLLQGIDDNSYTTLFKAVIQGVVDNYQPEVIVLQCGADSLSNDRLGNFNLSLDGHGECVSWTKSLGIPMMVLGGGGYTLKNVARCWANETGLLVGERLDDK----------LPETCEYYNYFGPDHSLRSGMEFKHENQNTKE-----YLQAIKVEVLENLRQIKGAPSVQ
F6V5K8/3-301               ---------------------------------------------------RAQTE-----------------------------AGGFQLIPLPCSPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEE----------LP-YSEYFEYFAPDFTLHPDVSTRIENQNSRQ-----YLDQIRQTIFENLKMLNHAPSVQ
A0A3B1IWK0/1-289           ------------------------------------------------------------------------------------------------SPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEFVKSFKIPLLVLGGGGYTVRNVARC----CALIFSRAVYNDFFPRCILCLLFP-NTEYFEYFAPDFTLHPDVSTRIENQNSRQ-----YLEQIRQTVFENLKMLNHAPSVQ
A0A3P9A311/1-283           ----------------------------------------------------------------------------------------MSVS--SFSPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEFVKSFRIPLLVLGGGGYTVRNVTQ--------LVTELISTP--------------PEYFEYFAPDFTLHPDVSTRIENQNSRQVYRDRTIRQIRSTVFENLKMLNHAPSVQ
A0A3Q3WV36/1-283           ------------------------------------------------------------------------------------------------SPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEFVKSFKIPLLVLGGGGYTVRNVARCWTFETSLLLDESISDE----------LP-YSEYFEYFAPDFTLHPDVSTRIENQNSRQ-----YLEQIRQTVFENLKMLNHAPSVQ
A0A261BRV0/25-400          VKRNVAYYFHPDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMAKYMTIVESPKLEAEDIAVFHSQDYVNFLQTVTPKLALTMPDEVLRKFNIG--EDCPLFAGIWDYCTLYSGGSVEGARRLNHGMNDTVINWPGGLHHAKRSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGNY-FPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYVKLFESIISSVDENFNPEAIVLQCGSDSLCEDRLGQFALSFNGHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMGDE----------IPGTSLYSHYFTPRL-LRPNLLPKMADANSAA-----YLQSIEQETLECLRMIRGAPSVQ
A0A2G5UXC3/25-400          RKRNVAYYYHPDVGHFHYGQLHPMKPQRLVVCNDLVASYEMPRYMTVVQSPKLEASDIAAFHSQDYVNFLQTVTPKLATTMQDDVLRKFNIG--EDCPLFAGLWDYCTLYSGGSVEGARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGQY-FPGSGSIMDKGVGPGKYFAINLPLMAAIRDEPYYKLFESVISSVEENFNPEAIVLQCGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMKDE----------IPESSLYSHYFSPRL-LRPMLTPKMADANSPA-----YLDSIEKETLECLRMIRGAPSVQ
A8XHZ1/25-400              RKRNVAYYYHPDVGHFHYGQLHPMKPQRLVVCNDLVASYEMPRYMTVVQSPKLEASDIAAFHSQDYVNFLQTVTPKLATTMQDDVLRKFNIG--EDCPLFAGLWDYCTLYSGGSVEGARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGQY-FPGSGSIMDKGVGPGKYFAINLPLMAAIRDEPYVKLFESVISSVEENFNPEAIVLQCGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMKDE----------IPESSLYSHYFSPRL-LRPLLTPKMADANSPA-----YLDSIEKETLECLRMIRGAPSVQ
E3LGY9/25-400              VKRNVAYYFHPDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMAKYMTIVESPKLEAEDIAVFHSQDYVNFLQTVTPKLALTMPDEVLRKFNIG--EDCPLFAGIWDYCTLYSGGSVEGARRLNHGMNDTVINWPGGLHHAKRSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGNY-FPGSGSIMDKGVGPGKYFAINVPLMAAIRDEPYVKLFESIISSVDENFNPEAIVLQCGSDSLCEDRLGQFALSFNGHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMGDE----------IPGTSLYSHYFTPRL-LRPNLLPKMADANSAA-----YLQSIEQETLECLRMIRGAPSVQ
#=GC scorecons             01211111110111111111111111111111111101111011111111222221211122111212221111211111111112214232002269675965779549596966994699765496699959999999747999999999996599999999499999999999999999995469999999997796829996956474956597875697994469595693599557944947475954999999699954999949599556965595679964498699999999689988764366456544453660000000000471364945995955296746457556597440000078449545567597765599999
#=GC scorecons_70          _________________________________________________________________________________________________*_*_**_***__*_*_*****_*****__**_***_********_*************_********_*******************___**************_***_*_*_*_*___****__****___*_*__*__**__**__*_*_*_*__******_***__****_*_**__**___*_*****__******************____*__*_______*___________*__*_*__**_*___***____*__*_**_______**__*____**_****__*****
#=GC scorecons_80          _________________________________________________________________________________________________*_*_*___**__*_*_*__**__***___*__***_********_************__********_*******************___*********_**_*_***_*_____*___*_**__****___*_*__*__**__**__*___*_*__******_***__****_*_**___*___*__***___**_********_******___________________________*____*__**_*___*_*_________**_______**__*_____*_*_*___*****
#=GC scorecons_90          _________________________________________________________________________________________________*___*____*__*_*_*__**__**____*__***_*******___***********__********_*******************___*********__*_*_***_*_____*___*_*___*_**___*_*__*__**___*__*_____*__******_***__****_*_**___*___*___**___**_********_*****_________________________________*__**_*___*___________*_________*__*_______*_____*****
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