# STOCKHOLM 1.0
#=GF ID 3.40.50.720/FF/000702
#=GF DE NADH dehydrogenase (Ubiquinone)
#=GF AC 3.40.50.720/FF/000702
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 92.472
#=GS Q74G63/2-290      AC Q74G63
#=GS Q74G63/2-290      OS Geobacter sulfurreducens PCA
#=GS Q74G63/2-290      DE NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase
#=GS Q74G63/2-290      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; 
#=GS Q74G63/2-290      DR GO; GO:0003954; GO:0008137; 
#=GS Q5LLZ2/5-309      AC Q5LLZ2
#=GS Q5LLZ2/5-309      OS Ruegeria pomeroyi DSS-3
#=GS Q5LLZ2/5-309      DE NADH ubiquinone oxidoreductase, putative
#=GS Q5LLZ2/5-309      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria; Ruegeria pomeroyi; 
#=GS Q5LLZ2/5-309      DR GO; GO:0016655; 
#=GS Q89WH0/9-309      AC Q89WH0
#=GS Q89WH0/9-309      OS Bradyrhizobium diazoefficiens USDA 110
#=GS Q89WH0/9-309      DE Oxidoreductase
#=GS Q89WH0/9-309      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS O66532/2-261      AC O66532
#=GS O66532/2-261      OS Aquifex aeolicus VF5
#=GS O66532/2-261      DE NADH dehydrogenase (Ubiquinone)
#=GS O66532/2-261      DR ORG; Bacteria; Aquificae; Aquificae; Aquificales; Aquificaceae; Aquifex; Aquifex aeolicus; 
#=GS B5YIQ0/1-217      AC B5YIQ0
#=GS B5YIQ0/1-217      OS Thermodesulfovibrio yellowstonii DSM 11347
#=GS B5YIQ0/1-217      DE NADH dehydrogenase
#=GS B5YIQ0/1-217      DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio yellowstonii; 
#=GS B0R6P4/3-289      AC B0R6P4
#=GS B0R6P4/3-289      OS Halobacterium salinarum R1
#=GS B0R6P4/3-289      DE ArNOG06768 family NADH-binding domain protein
#=GS B0R6P4/3-289      DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GS Q7NF91/2-298      AC Q7NF91
#=GS Q7NF91/2-298      OS Gloeobacter violaceus PCC 7421
#=GS Q7NF91/2-298      DE Gll3635 protein
#=GS Q7NF91/2-298      DR ORG; Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacteraceae; Gloeobacter; Gloeobacter violaceus; 
#=GS Q9RSY9/13-314     AC Q9RSY9
#=GS Q9RSY9/13-314     OS Deinococcus radiodurans R1
#=GS Q9RSY9/13-314     DE Uncharacterized protein
#=GS Q9RSY9/13-314     DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus radiodurans; 
#=GS G7DIU7/1-289      AC G7DIU7
#=GS G7DIU7/1-289      OS Bradyrhizobium japonicum USDA 6
#=GS G7DIU7/1-289      DE Oxidoreductase
#=GS G7DIU7/1-289      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium japonicum; 
#=GS A0A0E4BPG8/9-307  AC A0A0E4BPG8
#=GS A0A0E4BPG8/9-307  OS Bradyrhizobium diazoefficiens
#=GS A0A0E4BPG8/9-307  DE Oxidoreductase
#=GS A0A0E4BPG8/9-307  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS A0A2A6N6M9/9-309  AC A0A2A6N6M9
#=GS A0A2A6N6M9/9-309  OS Bradyrhizobium diazoefficiens
#=GS A0A2A6N6M9/9-309  DE Complex I NDUFA9 subunit family protein
#=GS A0A2A6N6M9/9-309  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS Q9HNV3/11-297     AC Q9HNV3
#=GS Q9HNV3/11-297     OS Halobacterium salinarum NRC-1
#=GS Q9HNV3/11-297     DE NADH dehydrogenase/oxidoreductase-like protein
#=GS Q9HNV3/11-297     DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; 
#=GF SQ 12
Q74G63/2-290              --KIFVTGGTGFVGGHVRRALLERGHSLRLLVHQRSEGVEA-------GIEQV-EGDVTRPDTFAGAVAGC--DATVNLVGIIREFP--GRGITFEKLHVEATRNVVEAARAAGI----------------RRHLQMSALATRPDATAAYHRTKWRAEEVVRQSELDWTIFRPSLIFGPKGAFVDM-LAGFVRRFPAVPVVGDGTYRLQPVSVDDVARCFALALDMPETFGQTYELCGPDRLTYNEVLDIIGRVLGKGHVVKIPQPLGLLKLVVPIMQGFS-----FFP---LTMDQITLLTEENICSNAWPSV------FGFEPCRFEAGIAS-----
Q5LLZ2/5-309              ---VTIYGGSGFVGRYIARRMAKEGWRVRVAVRRPNEAMHVKPYGAVGQVEPV-LCNLRDDNSVAQTMRGA--DAVVNCVGVLNE----LGRNSFDAVQAEGAERIARIAAEQGV----------------ARMVHVSAIGADGDSDSAYSRSKALGEAGVLRHMPDAMILRPSVIFGTEDQFFNR-FAGMTRFGPFLPVVG-AETRFQPVYVDDVARAAVKGVLGQA-PGGVYELGGPDVETFRALMQRMLGVIHRKRII-IALPFFAARIMAGMLDVAKFVSFQLFPNNILTRDQLKNLRRDNVVSEGAKGFA----DLGIAPEPMDTVLPAYLWKF
Q89WH0/9-309              ---VTVFGGSGFLGRNVVRALCKRDYRVRVAVRRPELAGYLQPSGKVGQVHVV-QANLRYPASVEAALRDS--DVVINLVGILTE----SGKQSFDAVQAKGAETVAKAAAAVGA-----------------RLVHVSAIGADAESPSRYAKAKAAGEAAVLAAVPSATIFRPSVMFGPEDQFTNR-FAALARMSPVLPLIG-GETKMQPVYVGDVATAIADAVDGKAKAGATYELGGPEVLTMREIIEAILEITARKPTL-VPLPFGLARFQANFLQFAP----GAFK---LTPDQVTLLQRDNVVSDAAKAAGLTLEGLGITADSLEAIAPQYLWR-
O66532/2-261              --KVFITGATGFVGRHIVRELLNRGYEVHAGVRNLSKLERLFGN----QVKGY-IVNFDEKDSIREALGKVNPDFVIHLIGILYEEK--KKGITFERVHYGHTKNLVEVSKGFNV----------------KKFLFMSALGTHDEAPSRYHQTKRWAEREVINSGLNYTIFRPSIILGPEQKLFFD-MYKITKYIPVVALPDFGNYQFQPVDVRDVACAYAEALKNPETDRKIYELCGTKVVTFKELLADIFSYWDRKVLM-IPMPKKLMYFAGLIVEKII-----EPP----------------------------------PFS-------------
B5YIQ0/1-217              MKKLLITGATGFVGRYIVNEALQKSYDIHLIVRNSTKAKALFGE----KPKIYQLKEFNNKKELRKIIEVINPQYVIHLIGIIQE----KKSDTFEKVHYEYSKVLYETLKDFSV----------------EKIIHMSALGVGEKAPSKYHITKLKAEKELIKTGIPFVILRPSFIIGHEQLLFVK-LRTILNNLPFLLFPDIRNYYFQPVDVRDVVECFLKAIDYNG--QGIFELCGDEKVTL-----------------------------------------------------------------------------------------------
B0R6P4/3-289              ---VLVTGGTGFIGTHLCRELDDRGHDVTAFAREPAD--AALPA----DVTRI-VGDVTVKETVANAIDGH--DAVVNLVALSPLFKPSGGDSRHLDVHLGGTENVVAAASEAGV----------------EYILQLSALDADPTGPTAYLRAKGRAEEAVRSSDLHHTIVRPSVVFGDGGEFVP--FTKQLTTPYVTGLPGGGASKFQPIWVGDLVPMLADALGTEAHWGETYDIGGPDVLTLADVTRMAYRAAGKSVRV-LPVPMPLAAVGLTLADPLP-----FVP---MGADQYRSLKLDNTTSANDVTA------FDVDPSTLRTLA-------
Q7NF91/2-298              ---ILLTGATGFIGSHTARTLRERGLSVRALVRSGADTSALKAL----EVDLV-VGHLDDKASLVRACTGV--DAIVHLVGIIREL---PPTVTFERIHVEGTRNLLAAATEAGV----------------RKFVYISAIGSRPDAIARYHQTKWATEALVRSSGLTWVILRPSVVFGPGDEFINLLANDLVRKPPFIPVIGPGTNKLQPLWVKDLAEVIARCTTSSSFDGRILEVGGPEQLSLHEILALLARHLRVRKPF-VSIPIALVQPAVALGSAIA---PQLLP---ITADQLTMLQEDNITAERPFSG-----ELRMPLTDLATGIREYLQN-
Q9RSY9/13-314             --RILVTGASGFVGRATLAELTRRGYEVVAGSRQGKGVGRGIGI----------KLDVTSEKSVRQALQDVQPAAVIHLVGIIAE----KGKQTFERVHIEGTRHVLDALRDYDAARQQAHKGDEMERPHPTRYLHMSALGADVLSPSAYSWSKGEAEGLVRLSGLPWTIFRPSLIFGVGDDFFGRVLKNLVSAAPVVPQIGDGQFPFRPISVEDVALAFAEALVKPETVGQIYALTGPQEFTFKELLALEQQALGQQKKV-VPVPQKLMDLAVPVISRLP-----AAP---ITRDQYAMLKAGNTAPNDAARA-----AFNLPLHRLQDRL-------
G7DIU7/1-289              ------------MGRNVVRALCRRDYRVRVAVRRPELAGYLQPSGRVGQVHIV-QANLRYPASVEAAMRDS--DVVINLVGILAE----SGAQTFDAVQAKGAETVAKAAAAAGA-----------------RLVHVSAIGADAESPSHYARAKAAGEAAVLAAVPSATIFRPSVIFGPEDQFTNR-FAALARMSPVLPLIG-EMTRMQPVYVGDVATAIADAVDGKAKAGATYELGGPEVLTMREIIEAIVAIADRKPML-VPLSFSLARFQANFLQFAP----GALK---LTPDQVTLLARDNVVSDAAKAAGLTLEGLGISADSLEAIAPQY----
A0A0E4BPG8/9-307          ---VTVFGGSGFLGRNVVRALCKRDYRVRVAVRRPELAGYLQPSGKVGQVHVV-QANLRYPASVEAALRDS--DVVINLVGILTE----SGKQSFDAVQAKGAETVAKAAAALGA-----------------RLVHVSAIGADAESPSRYAKAKAAGEAAVLAAVPSATIFRPSVMFGPEDQFTNR-FAALARMSPVLPLIG-GETKMQPVYVGDVATAIADAVDGKAKAGATYELGGPEVLTMREIIEAILEITARKPTL-VPLPFGLARFQANFLQFAP----GAFK---LTPDQVTLLERDNVVSDAAKAAGLTLEGLGITADSLEAIAPQYL---
A0A2A6N6M9/9-309          ---VTVFGGSGFLGRNVVRALCKRDYRVRVAVRRPELAGYLQPSGKVGQVHVV-QANLRYPASVEAALRDS--DVVINLVGILTE----SGKQSFDAVQAKGAETVAKAAAAVGA-----------------RLVHVSAIGADAESPSRYAKAKAAGEAAVLAAVPSATIFRPSVMFGPEDQFTNR-FAALARMSPVLPLIG-GETKMQPVYVGDVATAIADAVDGKAKAGATYELGGPEVLTMREIIEAILEITARKPTL-VPLPFGLARFQANFLQFAP----GAFK---LTPDQVTLLQRDNVVSDAAKAAGLTLEGLGITADSLEAIAPQYLWR-
Q9HNV3/11-297             ---VLVTGGTGFIGTHLCRELDDRGHDVTAFAREPAD--AALPA----DVTRI-VGDVTVKETVANAIDGH--DAVVNLVALSPLFKPSGGDSRHLDVHLGGTENVVAAASEAGV----------------EYILQLSALDADPTGPTAYLRAKGRAEEAVRSSDLHHTIVRPSVVFGDGGEFVP--FTKQLTTPYVTGLPGGGASKFQPIWVGDLVPMLADALGTEAHWGETYDIGGPDVLTLADVTRMAYRAAGKSVRV-LPVPMPLAAVGLTLADPLP-----FVP---MGADQYRSLKLDNTTSANDVTA------FDVDPSTLRTLA-------
#=GC scorecons            000545475577595454646247554745368443332342420000353240335542445633643430064776777753600003533575476355554644654436500000000000000001546559966553455649345933594374353533695999566945537432053344423655554706334589639497634464753334216357665965458535433232322343224045362263232323331330000023400034255232522453242221230000013332322423231111000
#=GC scorecons_70         _______*__**_*____*_*__*___*___**_________________________________*______*_**_****__*_________*__**______*_______________________________****________*___*___*__*________*_***_***____*____________*_____*______***_*_***___*_*_______*__***_**___*______________________*_________________________________________________________________________
#=GC scorecons_80         _______*__**_*_________*___*____*__________________________________________*__***________________*_______________________________________**__________*___*___*__*________*_***___*____*_________________________**__*_*__________________*___*____*________________________________________________________________________________________________
#=GC scorecons_90         _____________*__________________*________________________________________________________________________________________________________**__________*___*___*___________*_***___*______________________________**__*_*______________________*_____________________________________________________________________________________________________
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