# STOCKHOLM 1.0
#=GF ID 3.40.50.300/FF/002525
#=GF DE mRNA cleavage and polyadenylation factor CLP1
#=GF AC 3.40.50.300/FF/002525
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 35.540
#=GS 4oi4C02/111-350     AC Q08685
#=GS 4oi4C02/111-350     OS Saccharomyces cerevisiae S288C
#=GS 4oi4C02/111-350     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 4oi4C02/111-350     DR CATH; 4oi4; C:103-342; 
#=GS 4oi4C02/111-350     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4oi4C02/111-350     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS 4oi4A02/111-350     AC Q08685
#=GS 4oi4A02/111-350     OS Saccharomyces cerevisiae S288C
#=GS 4oi4A02/111-350     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 4oi4A02/111-350     DR CATH; 4oi4; A:103-342; 
#=GS 4oi4A02/111-350     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4oi4A02/111-350     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS 4c0hB02/103-342     AC Q08685
#=GS 4c0hB02/103-342     OS Saccharomyces cerevisiae S288C
#=GS 4c0hB02/103-342     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 4c0hB02/103-342     DR CATH; 4c0h; B:103-342; 
#=GS 4c0hB02/103-342     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4c0hB02/103-342     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS 4c0hA02/103-342     AC Q08685
#=GS 4c0hA02/103-342     OS Saccharomyces cerevisiae S288C
#=GS 4c0hA02/103-342     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 4c0hA02/103-342     DR CATH; 4c0h; A:103-342; 
#=GS 4c0hA02/103-342     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4c0hA02/103-342     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS 4c0bB02/103-342     AC Q08685
#=GS 4c0bB02/103-342     OS Saccharomyces cerevisiae S288C
#=GS 4c0bB02/103-342     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 4c0bB02/103-342     DR CATH; 4c0b; B:103-342; 
#=GS 4c0bB02/103-342     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4c0bB02/103-342     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS 4c0bA02/103-342     AC Q08685
#=GS 4c0bA02/103-342     OS Saccharomyces cerevisiae S288C
#=GS 4c0bA02/103-342     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 4c0bA02/103-342     DR CATH; 4c0b; A:103-342; 
#=GS 4c0bA02/103-342     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4c0bA02/103-342     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS 2npiB02/119-357     AC Q08685
#=GS 2npiB02/119-357     OS Saccharomyces cerevisiae S288C
#=GS 2npiB02/119-357     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 2npiB02/119-357     DR CATH; 2npi; B:104-342; 
#=GS 2npiB02/119-357     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2npiB02/119-357     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS 2npiA02/119-357     AC Q08685
#=GS 2npiA02/119-357     OS Saccharomyces cerevisiae S288C
#=GS 2npiA02/119-357     DE mRNA cleavage and polyadenylation factor CLP1
#=GS 2npiA02/119-357     DR CATH; 2npi; A:104-342; 
#=GS 2npiA02/119-357     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2npiA02/119-357     DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS Q08685/103-342      AC Q08685
#=GS Q08685/103-342      OS Saccharomyces cerevisiae S288C
#=GS Q08685/103-342      DE mRNA cleavage and polyadenylation factor CLP1
#=GS Q08685/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS Q08685/103-342      DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; 
#=GS Q75F23/103-337      AC Q75F23
#=GS Q75F23/103-337      OS Eremothecium gossypii ATCC 10895
#=GS Q75F23/103-337      DE mRNA cleavage and polyadenylation factor CLP1
#=GS Q75F23/103-337      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS R9XBN9/103-337      AC R9XBN9
#=GS R9XBN9/103-337      OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XBN9/103-337      DE mRNA cleavage and polyadenylation factor CLP1
#=GS R9XBN9/103-337      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS A0A0L8VGZ7/103-342  AC A0A0L8VGZ7
#=GS A0A0L8VGZ7/103-342  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VGZ7/103-342  DE mRNA cleavage and polyadenylation factor CLP1
#=GS A0A0L8VGZ7/103-342  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS H0GNV9/103-342      AC H0GNV9
#=GS H0GNV9/103-342      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GNV9/103-342      DE mRNA cleavage and polyadenylation factor CLP1
#=GS H0GNV9/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS C8ZH02/103-342      AC C8ZH02
#=GS C8ZH02/103-342      OS Saccharomyces cerevisiae EC1118
#=GS C8ZH02/103-342      DE mRNA cleavage and polyadenylation factor CLP1
#=GS C8ZH02/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LJR8/103-342      AC B3LJR8
#=GS B3LJR8/103-342      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LJR8/103-342      DE mRNA cleavage and polyadenylation factor CLP1
#=GS B3LJR8/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GWD9/103-342      AC C7GWD9
#=GS C7GWD9/103-342      OS Saccharomyces cerevisiae JAY291
#=GS C7GWD9/103-342      DE mRNA cleavage and polyadenylation factor CLP1
#=GS C7GWD9/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1NWV2/103-342      AC N1NWV2
#=GS N1NWV2/103-342      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NWV2/103-342      DE mRNA cleavage and polyadenylation factor CLP1
#=GS N1NWV2/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZP88/103-342      AC A6ZP88
#=GS A6ZP88/103-342      OS Saccharomyces cerevisiae YJM789
#=GS A6ZP88/103-342      DE mRNA cleavage and polyadenylation factor CLP1
#=GS A6ZP88/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WNB8/103-342      AC G2WNB8
#=GS G2WNB8/103-342      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WNB8/103-342      DE mRNA cleavage and polyadenylation factor K7_CLP1
#=GS G2WNB8/103-342      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 19
4oi4C02/111-350             MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
4oi4A02/111-350             MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
4c0hB02/103-342             MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTRKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
4c0hA02/103-342             MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTRKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
4c0bB02/103-342             MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
4c0bA02/103-342             MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
2npiB02/119-357             -KYIYNLHFXLEKIRXSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPXVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIXLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
2npiA02/119-357             -KYIYNLHFXLEKIRXSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPXVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIXLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
Q08685/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
Q75F23/103-337              --YLYNLHFALEKMRLSSFDGPRILVVGKASSGKTSLCKILCSYALKSKAYTPIYVNLNPQEGAFSPPGFLTATPISDILDVESTMWGQSMTTGATKLHNKQPMVKNFGLEMIAENRPLYMEVLGQLAQTVDGRLKNDPLVRRSGVIVDSPPLQHLDESYTELEVAITKFNIK-TLVVCAPDDSLAVELSDRFQTLV--RSIVRIPTSRGICNIDDVARRALQRSQIREYFYGNGSTVLS
R9XBN9/103-337              --YLYNLHFALEKMRLSSFDGPRILVVGKASSGKTTLCKILCSYALKSKAYTPIYVNLNPQEGAFSPPGFLTATPISDILDVESTMWGQSMTTGATKLHNKQPMVKNFGLEMIAENRPLYMEALGQLAQTVDGRLKNDPLVRRSGVIIDAPPLSDLDESYTELEVAITKFNIK-TLVVCAPDDSLAVELSDRFQALV--RSIVRIPTSRGVCNIDDVARRALQRSQIREYFYGNGSTVLS
A0A0L8VGZ7/103-342          MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPIWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
H0GNV9/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPIWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDXVYKRSLQRTSIREYFYGSLDTALS
C8ZH02/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDHVYKRSLQRTSIREYFYGSLDTALS
B3LJR8/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPIWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
C7GWD9/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
N1NWV2/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
A6ZP88/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
G2WNB8/103-342              MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHMDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALS
#=GC scorecons              129699999499969595969996669955558996956599999994599596969969965595599565999999999564559999695999499999979999999495996499694659959595599549949999949795956659995569954595969652499695459594456555955462255954995459755697946959995599999995459599
#=GC scorecons_70           __*_*****_*****_*_******_***____*****_*_*******__**_*_****_**___*__**___*********_____******_***_**************_*_***_****___**_*_*__**__**_*****_***_*__*_***___**___*_*_**___**_*___*_*_______*________*__**___**__****_**_***__*******___*_**
#=GC scorecons_80           __*_*****_***_*_*_*_***___**____***_*___*******__**_*_*_**_**___*__**___*********_____****_*_***_**************_*_**__**_*___**_*_*__**__**_*****_***_*____***___**___*_*_*____**_*___*_*_______*________*__**___**___***__*_***__*******___*_**
#=GC scorecons_90           __*_*****_***_*_*_*_***___**____***_*___*******__**_*_*_**_**___*__**___*********_____****_*_***_******_*******_*_**__**_*___**_*_*__**__**_*****_*_*_*____***___**___*_*_*____**_*___*_*_______*________*__**___*____*_*__*_***__*******___*_**
//