# STOCKHOLM 1.0
#=GF ID 3.40.1310.20/FF/000001
#=GF DE Replication-associated protein
#=GF AC 3.40.1310.20/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 84.182
#=GS 1l5iA00/1-118     AC P27260
#=GS 1l5iA00/1-118     OS Tomato yellow leaf curl Sardinia virus
#=GS 1l5iA00/1-118     DE Replication-associated protein
#=GS 1l5iA00/1-118     DR CATH; 1l5i; A:4-121; 
#=GS 1l5iA00/1-118     DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato yellow leaf curl Sardinia virus; 
#=GS P14990/7-117      AC P14990
#=GS P14990/7-117      OS Maize streak virus - [South Africa]
#=GS P14990/7-117      DE Replication-associated protein A
#=GS P14990/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS P14990/7-117      DR GO; GO:0039684; 
#=GS Q9YPS2/5-121      AC Q9YPS2
#=GS Q9YPS2/5-121      OS Mungbean yellow mosaic virus-Vigna
#=GS Q9YPS2/5-121      DE Replication-associated protein
#=GS Q9YPS2/5-121      DR ORG; Viruses; Geminiviridae; Begomovirus; Mungbean yellow mosaic virus; 
#=GS Q9YPS2/5-121      DR GO; GO:0051701; 
#=GS 1l2mA00/1-118     AC P27260
#=GS 1l2mA00/1-118     OS Tomato yellow leaf curl Sardinia virus
#=GS 1l2mA00/1-118     DE Replication-associated protein
#=GS 1l2mA00/1-118     DR CATH; 1l2m; A:4-121; 
#=GS 1l2mA00/1-118     DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato yellow leaf curl Sardinia virus; 
#=GS P14991/4-121      AC P14991
#=GS P14991/4-121      OS Beet curly top virus - California [Logan]
#=GS P14991/4-121      DE Replication-associated protein
#=GS P14991/4-121      DR ORG; Viruses; Geminiviridae; Curtovirus; Beet curly top virus; 
#=GS P14991/4-121      DR GO; GO:0039684; 
#=GS Q67622/7-125      AC Q67622
#=GS Q67622/7-125      OS Wheat dwarf virus - [Sweden]
#=GS Q67622/7-125      DE Replication-associated protein
#=GS Q67622/7-125      DR ORG; Viruses; Geminiviridae; Mastrevirus; Wheat dwarf virus; 
#=GS Q67622/7-125      DR GO; GO:0039684; 
#=GS P36279/5-121      AC P36279
#=GS P36279/5-121      OS Tomato leaf curl virus-[AU]
#=GS P36279/5-121      DE Replication-associated protein
#=GS P36279/5-121      DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato leaf curl virus; 
#=GS P36279/5-121      DR GO; GO:0051701; 
#=GS P03567/6-122      AC P03567
#=GS P03567/6-122      OS Tomato golden mosaic virus-Yellow vein
#=GS P03567/6-122      DE Replication-associated protein
#=GS P03567/6-122      DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato golden mosaic virus; 
#=GS P03567/6-122      DR GO; GO:0039684; 
#=GS A0A0D5CNA3/5-121  AC A0A0D5CNA3
#=GS A0A0D5CNA3/5-121  OS Tomato enation leaf curl virus
#=GS A0A0D5CNA3/5-121  DE Replication-associated protein
#=GS A0A0D5CNA3/5-121  DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato enation leaf curl virus; 
#=GS V5N3E9/4-120      AC V5N3E9
#=GS V5N3E9/4-120      OS Tomato leaf curl Kerala virus
#=GS V5N3E9/4-120      DE Replication-associated protein
#=GS V5N3E9/4-120      DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato leaf curl Kerala virus; 
#=GS G0YHS8/7-117      AC G0YHS8
#=GS G0YHS8/7-117      OS Maize streak virus
#=GS G0YHS8/7-117      DE Replication-associated protein
#=GS G0YHS8/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS P14988/7-117      AC P14988
#=GS P14988/7-117      OS Maize streak virus - [Kenya]
#=GS P14988/7-117      DE Replication-associated protein
#=GS P14988/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS Q77JB9/7-117      AC Q77JB9
#=GS Q77JB9/7-117      OS Maize streak virus - A[MatA]
#=GS Q77JB9/7-117      DE Replication-associated protein
#=GS Q77JB9/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS P14980/7-117      AC P14980
#=GS P14980/7-117      OS Maize streak virus - [Nigeria]
#=GS P14980/7-117      DE Replication-associated protein A
#=GS P14980/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS A5JLJ6/7-117      AC A5JLJ6
#=GS A5JLJ6/7-117      OS Maize streak virus
#=GS A5JLJ6/7-117      DE Replication-associated protein
#=GS A5JLJ6/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS P14978/7-117      AC P14978
#=GS P14978/7-117      OS Maize streak virus - [Nigeria]
#=GS P14978/7-117      DE Replication-associated protein
#=GS P14978/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS P14989/7-117      AC P14989
#=GS P14989/7-117      OS Maize streak virus - [South Africa]
#=GS P14989/7-117      DE Replication-associated protein
#=GS P14989/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS P03568/7-117      AC P03568
#=GS P03568/7-117      OS Maize streak virus - [Kenya]
#=GS P03568/7-117      DE Replication-associated protein A
#=GS P03568/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS O73464/7-117      AC O73464
#=GS O73464/7-117      OS Maize streak virus
#=GS O73464/7-117      DE Replication-associated protein
#=GS O73464/7-117      DR ORG; Viruses; Geminiviridae; Mastrevirus; Maize streak virus; 
#=GS P06847/7-125      AC P06847
#=GS P06847/7-125      OS Wheat dwarf virus - [Sweden]
#=GS P06847/7-125      DE Replication-associated protein A
#=GS P06847/7-125      DR ORG; Viruses; Geminiviridae; Mastrevirus; Wheat dwarf virus; 
#=GS Q8BA06/7-125      AC Q8BA06
#=GS Q8BA06/7-125      OS Wheat dwarf virus
#=GS Q8BA06/7-125      DE Replication-associated protein
#=GS Q8BA06/7-125      DR ORG; Viruses; Geminiviridae; Mastrevirus; Wheat dwarf virus; 
#=GS A0A288W876/7-125  AC A0A288W876
#=GS A0A288W876/7-125  OS Wheat dwarf virus
#=GS A0A288W876/7-125  DE Replication-associated protein
#=GS A0A288W876/7-125  DR ORG; Viruses; Geminiviridae; Mastrevirus; Wheat dwarf virus; 
#=GS Q5W1D6/7-125      AC Q5W1D6
#=GS Q5W1D6/7-125      OS Wheat dwarf virus
#=GS Q5W1D6/7-125      DE Replication-associated protein
#=GS Q5W1D6/7-125      DR ORG; Viruses; Geminiviridae; Mastrevirus; Wheat dwarf virus; 
#=GS Q76WK8/5-121      AC Q76WK8
#=GS Q76WK8/5-121      OS Mungbean yellow mosaic virus
#=GS Q76WK8/5-121      DE Replication-associated protein
#=GS Q76WK8/5-121      DR ORG; Viruses; Geminiviridae; Begomovirus; Mungbean yellow mosaic virus; 
#=GS O91597/5-121      AC O91597
#=GS O91597/5-121      OS Mungbean yellow mosaic virus-Thailand
#=GS O91597/5-121      DE Replication-associated protein
#=GS O91597/5-121      DR ORG; Viruses; Geminiviridae; Begomovirus; Mungbean yellow mosaic virus; 
#=GS S5VC52/5-121      AC S5VC52
#=GS S5VC52/5-121      OS Mungbean yellow mosaic virus
#=GS S5VC52/5-121      DE AC1
#=GS S5VC52/5-121      DR ORG; Viruses; Geminiviridae; Begomovirus; Mungbean yellow mosaic virus; 
#=GS S5WA97/5-121      AC S5WA97
#=GS S5WA97/5-121      OS Mungbean yellow mosaic virus
#=GS S5WA97/5-121      DE Replication-associated protein
#=GS S5WA97/5-121      DR ORG; Viruses; Geminiviridae; Begomovirus; Mungbean yellow mosaic virus; 
#=GS A0A0N9E558/4-121  AC A0A0N9E558
#=GS A0A0N9E558/4-121  OS Beet curly top virus
#=GS A0A0N9E558/4-121  DE Replication-associated protein
#=GS A0A0N9E558/4-121  DR ORG; Viruses; Geminiviridae; Curtovirus; Beet curly top virus; 
#=GS Q6LDC7/5-121      AC Q6LDC7
#=GS Q6LDC7/5-121      OS Tomato leaf curl virus-[AU]
#=GS Q6LDC7/5-121      DE Replication-associated protein
#=GS Q6LDC7/5-121      DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato leaf curl virus; 
#=GS G9CM47/6-122      AC G9CM47
#=GS G9CM47/6-122      OS Tomato golden mosaic virus
#=GS G9CM47/6-122      DE Replication-associated protein
#=GS G9CM47/6-122      DR ORG; Viruses; Geminiviridae; Begomovirus; Tomato golden mosaic virus; 
#=GF SQ 30
1l5iA00/1-118             SGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRS-AHFHPNIQGAKSSSDVKSYI----DKD-GDVLEWGTFQIDGR
P14990/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
Q9YPS2/5-121              -GRFAINAKNYFLTYPRCPLTKEDVLEQLLALSTPVNKKFIRVCRELHEDGEPHLHVLLQFEGKLQTKNERFFDLVSPTRS-THYHPNIQAAKSASDVKSYM----DKD-GDVLDHGSFQVDGR
1l2mA00/1-118             SGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRS-AHFHPNIQGAKSSSDVKSYI----DKD-GDVLEWGTFQIDGR
P14991/4-121              TKRFRIQAKNIFLTYPQCSLSKEEALEQIQGIQLSSNKKYIKIARELHEDGQPHLHVLLQLEGKVQITNIRLFDLVSPTRS-AHFHPNIQGAKSSSDVKSYV----DKD-GDTIEWGEFQIDGR
Q67622/7-125              -PRFRVYSKYLFLTYPECTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSD-VNTAEWGTFVA---
P36279/5-121              -KSFRINAKNYFLTYPKCSLTKEEALSQLNNLETPTSKKYIKVCRELHENGEPHLHVLIQFEGKFQCKNQRFFDLVSPTRS-AHFHPNIQGAKSSSDVKSYL----EKD-GDTLEWGEFQIDGR
P03567/6-122              -KRFQINAKNYFLTYPQCSLSKEESLSQLQALNTPINKKFIKICRELHEDGQPHLHVLIQFEGKYCCQNQRFFDLVSPTRS-AHFHPNIQRAKSSSDVKTYI----DKD-GDTLVWGEFQVDGR
A0A0D5CNA3/5-121          -RPFRINAKNYFLTYPKCSLTKEEALSQLKNLETPTSKKYIKICRELHEDGEPHLHVLIQFEGKYQCKNQRFFDLVSPTRS-AHFHPNIQGAKSSSDVKAYI----DKD-GDTLEWGEFQIDGR
V5N3E9/4-120              -KRFLINSKNYFLTYPKCSLTKEEALSQLQNLATPTNKKYIKICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRS-AHFHPNIQGAKSSSDVKSYL----EKD-GDTLEWGEFQIDGR
G0YHS8/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
P14988/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
Q77JB9/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
P14980/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
A5JLJ6/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
P14978/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
P14989/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
P03568/7-117              NRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAVFERGTFIP--R
O73464/7-117              NRQFSHRNANTFLTCPKCPENPEIACQMIWELVVRWIPKYILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDING-------FHPNIQSAKSVNRVRDYI----LKEPLAMFERGTFIP--R
P06847/7-125              -PRFRVYSKYLFLTYPECTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSD-VNTAEWGTFVA---
Q8BA06/7-125              -PRFRVYSKYLFLTYPECTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSD-VNTAEWGTFVA---
A0A288W876/7-125          -PRFRVYSKYLFLTYPQCTLEPQYALDSLRTLLNKYEPLYIAAVRELHEDGSPHLHILVQNKLRASITNPNALNLRMDTSPFSIFHPNIQAAKDCNQVRDYITKEVDSD-VNTAEWGTFVA---
Q5W1D6/7-125              -PRFRVYSKYLFLTYPQCILEPQYALESLRTLLAKYEPLYIAAVRELHEDGSPHLHVLVQNKLRASITNTNALNLRMNTSPFSIFHPNIQAAKDCNQVREYITKEVDSD-VNTAEWGTFIA---
Q76WK8/5-121              -GRFAINAKNYFLTYPRCPLRKEDALEELLALSTPVNKKFIRVCRELHEDGEPHLHVLLQFEGKFQTKNERFFDLVSSTRS-AHYHPNVQAAKSASDVKSYM----DKD-GDVVDHGSFQVDGR
O91597/5-121              -GRFAINAKNYFLTYPRCPLRKEDALEELLALSTPVNKKFIRVCRELHEDGEPHLHVLLQFEGKFQTKNERFFDLVSSTRS-AHYHPNVQAAKSASDVKSYM----DKD-GDVVDHGSFQVDGR
S5VC52/5-121              -GRFAINAKNYFLTYPRCPLTKEDVLEQLLALSTPVNKKFIRVCRELHEDGEPHLHVLLQFEGKLQTKNERFFDLVSPTRS-AHYHPNVQAAKSASDVKSYM----DKD-GDVLDHGSFQVDGR
S5WA97/5-121              -GRFAINAKNYFLTYPRCPLTKEDVLEQLLALSTPVNKKFIRVCRELHEDGEPHLHVLLQFEGKLQTKNERFFDLVSPTRS-AHYHPNVQAAKSASDVKSYM----DKD-GDVLDHGSFQVDGR
A0A0N9E558/4-121          TKRFRIQAKNIFLTYPQCSLSKEEALEQIQGIQLSFNKKYIKIAREIHEDGQPHFHVLLQLEGKVQITNIRLFDLVSPTRS-AHFHPNIQGGKSSSDVKSYV----DKD-GDTIEWGEFQIDGR
Q6LDC7/5-121              -KSFRINAKNYFLTYPKCSLTKEEALSQLNNLETPTSKKYIKVCRELHENGEPHLHVLIQFEGKFQCKNQRFFDLVSPTRS-AHFHPNIQGAKSSSDVKSYL----EKD-GDTLEWGEFQIDGR
G9CM47/6-122              -KRFQINAKNYFLTYPQCSLSKEESLSQLQALNTPINKKFIKICRELHEDGQPHLHVLIQFEGKYCCQNQRFFDLVSPTRS-AHFHPNIQRAKSSSDVKTYI----DKD-GDTLVWGEFQVDGR
#=GC scorecons            1459444556499989594545737544634834434557934499596795698969694745445463657764423220228999894896465975960000467045547595944115
#=GC scorecons_70         ___*_____*_*****_*____*_*___*__*_______**___**_****__***_*_*_*______*_*_***_________******_***___**_**_____**_____*_*_*_____
#=GC scorecons_80         ___*_______*****_*____*_*______*_______**___**_*_**__***_*_*____________**__________******_**____*__*_______*_____*_*_*_____
#=GC scorecons_90         ___*_______*****_*_____________*________*___**_*__*__***_*_*________________________******_**____*__*_______________*_*_____
//