# STOCKHOLM 1.0 #=GF ID 3.40.1280.10/FF/000027 #=GF DE Putative tRNA/rRNA methyltransferase YsgA #=GF AC 3.40.1280.10/FF/000027 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 84.714 #=GS Q9XWY8/120-294 AC Q9XWY8 #=GS Q9XWY8/120-294 OS Caenorhabditis elegans #=GS Q9XWY8/120-294 DE Uncharacterized protein #=GS Q9XWY8/120-294 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS A0A178V0A2/187-351 AC A0A178V0A2 #=GS A0A178V0A2/187-351 OS Arabidopsis thaliana #=GS A0A178V0A2/187-351 DE Uncharacterized protein #=GS A0A178V0A2/187-351 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q8GYL4/187-351 AC Q8GYL4 #=GS Q8GYL4/187-351 OS Arabidopsis thaliana #=GS Q8GYL4/187-351 DE At4g38020 #=GS Q8GYL4/187-351 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A8JI30/4-148 AC A8JI30 #=GS A8JI30/4-148 OS Chlamydomonas reinhardtii #=GS A8JI30/4-148 DE Predicted protein #=GS A8JI30/4-148 DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; #=GS Q10F15/168-339 AC Q10F15 #=GS Q10F15/168-339 OS Oryza sativa Japonica Group #=GS Q10F15/168-339 DE Os03g0685100 protein #=GS Q10F15/168-339 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS F6I723/1205-1373 AC F6I723 #=GS F6I723/1205-1373 OS Vitis vinifera #=GS F6I723/1205-1373 DE Uncharacterized protein #=GS F6I723/1205-1373 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS G7LIJ4/165-330 AC G7LIJ4 #=GS G7LIJ4/165-330 OS Medicago truncatula #=GS G7LIJ4/165-330 DE Putative 23S rRNA (Guanosine(2251)-2'-O)-methyltransferase #=GS G7LIJ4/165-330 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago; Medicago truncatula; #=GS V4MKP0/188-352 AC V4MKP0 #=GS V4MKP0/188-352 OS Eutrema salsugineum #=GS V4MKP0/188-352 DE Uncharacterized protein #=GS V4MKP0/188-352 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS M4D5P4/180-338 AC M4D5P4 #=GS M4D5P4/180-338 OS Brassica rapa subsp. pekinensis #=GS M4D5P4/180-338 DE Uncharacterized protein #=GS M4D5P4/180-338 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS A0A1J3H1J0/203-365 AC A0A1J3H1J0 #=GS A0A1J3H1J0/203-365 OS Noccaea caerulescens #=GS A0A1J3H1J0/203-365 DE Putative tRNA/rRNA methyltransferase YsgA #=GS A0A1J3H1J0/203-365 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; #=GS A0A1S2YTK9/173-338 AC A0A1S2YTK9 #=GS A0A1S2YTK9/173-338 OS Cicer arietinum #=GS A0A1S2YTK9/173-338 DE uncharacterized protein LOC101501432 #=GS A0A1S2YTK9/173-338 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer; Cicer arietinum; #=GS C6T8X9/163-323 AC C6T8X9 #=GS C6T8X9/163-323 OS Glycine max #=GS C6T8X9/163-323 DE Uncharacterized protein #=GS C6T8X9/163-323 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS I1GPH8/169-341 AC I1GPH8 #=GS I1GPH8/169-341 OS Brachypodium distachyon #=GS I1GPH8/169-341 DE Uncharacterized protein #=GS I1GPH8/169-341 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS B4FFL5/192-361 AC B4FFL5 #=GS B4FFL5/192-361 OS Zea mays #=GS B4FFL5/192-361 DE tRNA/rRNA methyltransferase (SpoU) family protein #=GS B4FFL5/192-361 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0D9VXK2/169-340 AC A0A0D9VXK2 #=GS A0A0D9VXK2/169-340 OS Leersia perrieri #=GS A0A0D9VXK2/169-340 DE Uncharacterized protein #=GS A0A0D9VXK2/169-340 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A8XSI5/120-280 AC A8XSI5 #=GS A8XSI5/120-280 OS Caenorhabditis briggsae #=GS A8XSI5/120-280 DE Protein CBG18354 #=GS A8XSI5/120-280 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; #=GS J3LRN1/172-343 AC J3LRN1 #=GS J3LRN1/172-343 OS Oryza brachyantha #=GS J3LRN1/172-343 DE Uncharacterized protein #=GS J3LRN1/172-343 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; #=GS A0A0D9ZBR3/168-339 AC A0A0D9ZBR3 #=GS A0A0D9ZBR3/168-339 OS Oryza glumipatula #=GS A0A0D9ZBR3/168-339 DE Uncharacterized protein #=GS A0A0D9ZBR3/168-339 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; #=GS I1NVW0/168-339 AC I1NVW0 #=GS I1NVW0/168-339 OS Oryza glaberrima #=GS I1NVW0/168-339 DE Uncharacterized protein #=GS I1NVW0/168-339 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS A0A0D3FMJ3/168-339 AC A0A0D3FMJ3 #=GS A0A0D3FMJ3/168-339 OS Oryza barthii #=GS A0A0D3FMJ3/168-339 DE Uncharacterized protein #=GS A0A0D3FMJ3/168-339 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS A0A0E0NZP7/168-334 AC A0A0E0NZP7 #=GS A0A0E0NZP7/168-334 OS Oryza rufipogon #=GS A0A0E0NZP7/168-334 DE Uncharacterized protein #=GS A0A0E0NZP7/168-334 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; #=GS A0A0E0KHJ3/169-339 AC A0A0E0KHJ3 #=GS A0A0E0KHJ3/169-339 OS Oryza punctata #=GS A0A0E0KHJ3/169-339 DE Uncharacterized protein #=GS A0A0E0KHJ3/169-339 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; #=GS A0A0E0GS00/168-339 AC A0A0E0GS00 #=GS A0A0E0GS00/168-339 OS Oryza sativa f. spontanea #=GS A0A0E0GS00/168-339 DE Uncharacterized protein #=GS A0A0E0GS00/168-339 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; #=GS B8APK6/157-328 AC B8APK6 #=GS B8APK6/157-328 OS Oryza sativa Indica Group #=GS B8APK6/157-328 DE Uncharacterized protein #=GS B8APK6/157-328 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GF SQ 24 Q9XWY8/120-294 SALQFSNFEPKTVSIFVDKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITPAMIKSSCGALEHLPVQQFLNFNEFRDKIKAAGGELVAT---CDPGAAEKA-GISAKSLDQWTPEKPVGIVLGDEGVGISRGILNLCDTVISISPVRKDGSNVTSLNVSVVAGILLHHISLQNRTN--- A0A178V0A2/187-351 -DCN-KWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPG-CCDPYNDKALRASRGASFQLPIVS-GNWNHLKLLENEFQMKLLAGHPATTTQKLKPV-SKLSVEFAQSLAEKPLCLILGSEGNGLSEQARKVCV-LVSIPMA----GDFESLNVSVAGGIFLYMLQNL------- Q8GYL4/187-351 -DCN-KWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPG-CCDPYNDKALRASRGASFQLPIVS-GNWNHLKLLENEFQMKLLAGHPATTTQKLKPV-SKLSVEFAQSLAEKPLCLILGSEGNGLSEQARKVCV-LVSIPMA----GDFESLNVSVAGGIFLYMLQNL------- A8JI30/4-148 ---S-TATSRAVRLLVLDGVQDPGNLGTLVRSALAFGWHGLFLLPG-CCDPLNDKAVRASRGAVLRLPVAA-GQLRELQEAAEELGLLLLSSSG------------------SGSGCSGGVALVLGSEGQGLSGAVRALCS-PVAVPMT---PGAMESLNVGVAGSLLMFALS--------- Q10F15/168-339 AVLD-EWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLHALMAKSDMKMLAGHPESSSNGSERT-HVLSKELADSLMSESVCLVLGSEGNGLSADTLQACE-LVNIPMQ----GTFESLNVSVAGGIFLFMLQTKQQKMAE- F6I723/1205-1373 --CR-RWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSG-CCDPFNGKALRASRGASFQLPIVS-GSWIHLETLKNEFQMKMIAGHPDSNQ-KRKPV-SPLSQGLADSLADVPLCLVLGSEGSGLSEKSWQLCE-LVSIPMA----GEFESLNVSVAGGIFLYMLQPQNRRVGI- G7LIJ4/165-330 -NCQ-KWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPG-CCDPFNEKALRASRGASFQLPIVS-GSWNHLESLKEESQMKLLAGHPQHEG-LIKPV-FSLSQSFCDSILDTPLCLVLGSEGSGLSEKSLQACE-LVSIAMT----GEYESLNVSVAGGIFLYMLQPKNK----- V4MKP0/188-352 -DCN-KWFPSAHRVLVLDRIQDPGNLGTLIRSAMAFNWDGAFLLPG-CCDPFNDKALRASRGACFQLPIVS-GNWNHLKLLEHEFQMKLLAGHPETTTQKPKPV-SKLSLEFAQSLAEKPLCLILGSEGHGLSEQSRQVCE-LVSIPMA----GEFESLNVSVAGGIFLFMLQPC------- M4D5P4/180-338 -DCK-KWFPSAHRVLVLDSIQDPGNLGTLIRSAMAFNWDGAFLLPG-CCDPFNDKALRASRGASFQLPIVS-GNWNHLKLLQREFQMKLLAGHPATQ----KPV-SRLSLEFAQSLAEKPLCLILGSEGHGLSEQSRQVCE-LVSIPME----GEFESLNVSVAGGIFLFMLQ--------- A0A1J3H1J0/203-365 -DCK-KWFPSAHRVLVLDSIQDPGNLGTLIRSAMAFNWDGAFLLPG-CCDPFNEKALRASRGASFQLPIVS-GDWNHLKLLENEFQMKLLAGHPATT----KPVSSKLSLEFAQSLAEKPLCLILGSEGLGLSEQSRKLCE-LVSIPMA----GEFESLNVSVAGGIFLFMLQSCS------ A0A1S2YTK9/173-338 -HCR-KWFSSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPG-CCDPFNEKALRASRGASFQLPIVS-GTWNHLESLKEESQMKLLAGHPENEG-LIKLV-SLLSPSFCESISDAPLCLVLGSEGSGLSEKSLQACE-LVSIPMT----GEYESLNVSVAGGIFLYMLQPKNK----- C6T8X9/163-323 ------WFPSVHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPG-CCDPFNEKALRASRGASFQLPVVS-GSWNHLESLKKEFQMRFLAGHPEHEG-LVKPV-SSLSPSFCDSLSDTPLCLVLGSEGSGLSEKSLQTCE-LVSIAMT----GEYESLNVSVAGGIFLYMLQPKN------ I1GPH8/169-341 AALD-GLLHSPRRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPS-CCDPFNEKALRAARGASLQLPIVS-GNWYDLRAFMTERGMKMLAGHPESNSDGSDGT-QTLSKELADSLMNESLCLVLGSEGNGLSEETVQACE-LVSIPME----GIFESLNVSVAGGIFLFMLRPKQQIYSRT B4FFL5/192-361 -ALD-GLFSYPKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPA-CCDPFNEKAIRAARGASLQLPIVS-GTWHDLHALVTKYRMKMMAGHPESSSDASKET-YSLSNELADSLLNESLCLVLGSEGNGLSAETLQACE-LVNIPME----GTFESLNVSVAGGIFLFMLQPKGQIDR-- A0A0D9VXK2/169-340 AVLD-ELFSSAKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPA-CCDPFNEKALRAARGASLQLPIVS-GNWSDLHALMAKYDMKMLAGHPESSSNGSERT-HALSEELTDSLISESLCLVLGNEGNGLSAETLQACQ-LVNIPME----GTFESLNVSVAGGIFLFMLQIKQQKMAE- A8XSI5/120-280 SALKFSSFQPKNVSIFVDKVLDPGNLGAIGRSAWFFGADGVGLVKGRGPKSVTPSMIKSSCGALEHLPVQQFEGFHEFRDQIKSNGGEIVAT---CDPLAAKKA-GITAKSLDQWKPHKTVGIVLGDEGVGISRGILNLCDTVISIAPVGEHQSNVTSLNVSVVA----------------- J3LRN1/172-343 AVLD-ELFCSANRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLRALMAKYDIKMLAGHPESSSNGSERT-HVLSKELADSLRSESVCLVLGSEGNGLSVETLQACE-LVNIPME----GTFESLNVSVAGGIFLFMLQTKQQKMAE- A0A0D9ZBR3/168-339 AVLD-EWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLHALMAKSDMKMLAGHPESSSNGSERT-HVLSKELADSLMSESVCLVLGSEGNGLSAETLQACE-LVNIPMQ----GTFESLNVSVAGGIFLFMLQTKQQKMAE- I1NVW0/168-339 AVLD-EWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLHALMAKSDMKMLAGHPESSSNGSERT-HVLSKELADSLMSESVCLVLGSEGNGLSAETLQACE-LVNIPMQ----GTFESLNVSVAGGIFLFMLQTKQQKMAE- A0A0D3FMJ3/168-339 AVLD-EWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLHALMAKSDMKMLAGHPESSSNGSERT-HVLSKELADSLMSESVCLVLGSEGNGLSAETLQACE-LVNIPMQ----GTFESLNVSVAGGIFLFMLQTKQQKMAE- A0A0E0NZP7/168-334 AVLD-EWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLHALMAKSDMKMLAGHPESSSNGSERT-HVLSKELADSLMSESVCLVLGSEGNGLSADTLQACE-LVNIPMQ----GTFESLNVSVAGGIFLFI---RVQGI--- A0A0E0KHJ3/169-339 -VLD-EWLGYAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLRALMAKSDMKMLAGHPESSGNGSEKT-RVLSKELADSLMRESVCLVLGSEGNGLSAETLQACE-LVNIPME----GTFESLNVSIAGGIFLFMLQTKQQKMAE- A0A0E0GS00/168-339 AVLD-EWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLHALMAKPDMKMLAGHPESSSNGSERT-HVLSKELADSLMSESVCLVLGSEGNGLSAETLQACE-LVNIPMQ----GTFESLNVSVAGGIFLFMLQTKQQKMAE- B8APK6/157-328 AVLD-EWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPA-CCDPFNEKALRAARGASLQLPVVS-GNWSDLHALMAKPDMKMLAGHPESSSNGSERT-HVLSKELADSLMSESVCLVLGSEGNGLSAETLQACE-LVNIPMQ----GTFESLNVSVAGGIFLFMLQTKQQKMAE- #=GC scorecons 12440346355465777957699999977499936946796697660767767567677679954799766065645743534534566786553433123534033563455565344566779969949794445559506758663000074579999887766665565232211000 #=GC scorecons_70 ____________*_****_**********_***_**_***_****__****_*_*********__****_*_*____*___________***______________________*_____*********_***______*__**_***_____*__*************_____________ #=GC scorecons_80 ______________****_*_********_***__*__**__**_____**_*____**__**___**_________*____________*_______________________________****_**_***______*___*_*_______*___********_________________ #=GC scorecons_90 _________________*___******___***__*___*__*__________________**___**______________________*_________________________________**_**_*_*______*_____*___________******___________________ //