# STOCKHOLM 1.0
#=GF ID 3.40.1170.60/FF/000021
#=GF DE DNA polymerase IV
#=GF AC 3.40.1170.60/FF/000021
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 80.758
#=GS G5EFY1/12-74       AC G5EFY1
#=GS G5EFY1/12-74       OS Caenorhabditis elegans
#=GS G5EFY1/12-74       DE DNA polymerase eta
#=GS G5EFY1/12-74       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G5EFY1/12-74       DR GO; GO:0000003; GO:0005515; GO:0005634; GO:0009792; GO:0042276; GO:1904290; 
#=GS Q2FWZ5/4-63        AC Q2FWZ5
#=GS Q2FWZ5/4-63        OS Staphylococcus aureus subsp. aureus NCTC 8325
#=GS Q2FWZ5/4-63        DE DNA polymerase IV
#=GS Q2FWZ5/4-63        DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A0D1E5X1/68-125  AC A0A0D1E5X1
#=GS A0A0D1E5X1/68-125  OS Ustilago maydis 521
#=GS A0A0D1E5X1/68-125  DE Uncharacterized protein
#=GS A0A0D1E5X1/68-125  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS W4XCJ5/74-146      AC W4XCJ5
#=GS W4XCJ5/74-146      OS Strongylocentrotus purpuratus
#=GS W4XCJ5/74-146      DE Uncharacterized protein
#=GS W4XCJ5/74-146      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS A7SBP1/12-69       AC A7SBP1
#=GS A7SBP1/12-69       OS Nematostella vectensis
#=GS A7SBP1/12-69       DE Predicted protein
#=GS A7SBP1/12-69       DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS E9GGG3/10-67       AC E9GGG3
#=GS E9GGG3/10-67       OS Daphnia pulex
#=GS E9GGG3/10-67       DE Uncharacterized protein
#=GS E9GGG3/10-67       DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS B3RPL1/12-69       AC B3RPL1
#=GS B3RPL1/12-69       OS Trichoplax adhaerens
#=GS B3RPL1/12-69       DE Uncharacterized protein
#=GS B3RPL1/12-69       DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS C3YR59/24-81       AC C3YR59
#=GS C3YR59/24-81       OS Branchiostoma floridae
#=GS C3YR59/24-81       DE Uncharacterized protein
#=GS C3YR59/24-81       DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS A0A133Q1R0/4-63    AC A0A133Q1R0
#=GS A0A133Q1R0/4-63    OS Staphylococcus aureus
#=GS A0A133Q1R0/4-63    DE DNA polymerase IV
#=GS A0A133Q1R0/4-63    DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; 
#=GS A8XDU1/12-74       AC A8XDU1
#=GS A8XDU1/12-74       OS Caenorhabditis briggsae
#=GS A8XDU1/12-74       DE Protein CBR-POLH-1
#=GS A8XDU1/12-74       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A1I7U319/12-74   AC A0A1I7U319
#=GS A0A1I7U319/12-74   OS Caenorhabditis tropicalis
#=GS A0A1I7U319/12-74   DE Uncharacterized protein
#=GS A0A1I7U319/12-74   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A2G5UPA0/12-74   AC A0A2G5UPA0
#=GS A0A2G5UPA0/12-74   OS Caenorhabditis nigoni
#=GS A0A2G5UPA0/12-74   DE Uncharacterized protein
#=GS A0A2G5UPA0/12-74   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A0H2XIA3/4-63    AC A0A0H2XIA3
#=GS A0A0H2XIA3/4-63    OS Staphylococcus aureus subsp. aureus USA300
#=GS A0A0H2XIA3/4-63    DE DNA polymerase IV
#=GS A0A0H2XIA3/4-63    DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GF SQ 13
G5EFY1/12-74               CFYAQVEQRDNPSLWGQPV---------------IVVQHSRQGIEGGILAVSYEARPFGVKRGMTVAEAKLKCPQISI-
Q2FWZ5/4-63                -FFAQVEMRDNPKLKGKPV---------------IVGGKA--SSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYF-
A0A0D1E5X1/68-125          AFYVSACRKRDPSLVGIPI---------------GIQQKA------LVATISYEARAAGVGKLDSIKDALKKCPDMILV
W4XCJ5/74-146              CFYAQVEMLRNPTLRDKPLGSTFVVFIVLPFNYKGIQQKN------IVVTTNYVARARGVSKLSYIKEALIKCPDLVLV
A7SBP1/12-69               CFYAQVEMIRNPCLRDRPV---------------GVSQKH------ILVTCNYVARAMGLKKLISLAEAKKKCPDLVII
E9GGG3/10-67               CFYAQVETILNPSLCGKPL---------------GIKQKN------IVVTCNYEARALGVEKLMSIKTALEKCPSLVLA
B3RPL1/12-69               CFYAQVEMAKNSSLRNKPV---------------GIRQKH------IIVTSNYPARERGVGKLIPLTKALEKCPDLIVI
C3YR59/24-81               CFYAQVEMIRDPSLRDKPL---------------GIQQKY------IVVTCNYVARKHGVTKLMGIKQAKELCPELVLV
A0A133Q1R0/4-63            -FFAQVEMRDNPKLKGKPV---------------IVGGKA--SSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYF-
A8XDU1/12-74               CFYAQVEQRDKPELWGQPV---------------IVVQHSRQGVEGGILAVSYEARPFGVKRGMSVADAKIKCPHLNI-
A0A1I7U319/12-74           CFYAQVEQRDNPTLWGQPV---------------IVVQHSRQGVEGGILAVSYEARPFGVKRGMSVVDAKIKCPQLNV-
A0A2G5UPA0/12-74           CFYAQVEQRDKPELWGQPV---------------IVVQHSRQGVEGGILAVSYEARPFGVKRGMSVADAKIKCPQLNI-
A0A0H2XIA3/4-63            -FFAQVEMRDNPKLKGKPV---------------IVGGKA--SSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYF-
#=GC scorecons             4978787444683936596000000000000000473663001112464636959943983545453494359944351
#=GC scorecons_70          _******___**_*___**________________*_**________*_*__*_**__**________*___**_____
#=GC scorecons_80          _******____*_*___*__________________________________*_**__**________*___**_____
#=GC scorecons_90          _*_________*_*___*__________________________________*_**__**________*___**_____
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