# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/000717
#=GF DE regulator of nonsense transcripts 3B
#=GF AC 3.30.70.330/FF/000717
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 89.890
#=GS Q9W1H3/21-119      AC Q9W1H3
#=GS Q9W1H3/21-119      OS Drosophila melanogaster
#=GS Q9W1H3/21-119      DE FI21285p1
#=GS Q9W1H3/21-119      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9W1H3/21-119      DR GO; GO:0000184; 
#=GS Q8T994/21-119      AC Q8T994
#=GS Q8T994/21-119      OS Drosophila melanogaster
#=GS Q8T994/21-119      DE SD10857p
#=GS Q8T994/21-119      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q8T994/21-119      DR GO; GO:0000184; 
#=GS A7T2J9/1-84        AC A7T2J9
#=GS A7T2J9/1-84        OS Nematostella vectensis
#=GS A7T2J9/1-84        DE Predicted protein
#=GS A7T2J9/1-84        DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS E9H8Q6/21-117      AC E9H8Q6
#=GS E9H8Q6/21-117      OS Daphnia pulex
#=GS E9H8Q6/21-117      DE Uncharacterized protein
#=GS E9H8Q6/21-117      DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS D6W8W1/26-116      AC D6W8W1
#=GS D6W8W1/26-116      OS Tribolium castaneum
#=GS D6W8W1/26-116      DE Uncharacterized protein
#=GS D6W8W1/26-116      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS Q7Q545/61-159      AC Q7Q545
#=GS Q7Q545/61-159      OS Anopheles gambiae
#=GS Q7Q545/61-159      DE AGAP006649-PA
#=GS Q7Q545/61-159      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS F6XS77/3-98        AC F6XS77
#=GS F6XS77/3-98        OS Ciona intestinalis
#=GS F6XS77/3-98        DE Uncharacterized protein
#=GS F6XS77/3-98        DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS C3ZF64/27-127      AC C3ZF64
#=GS C3ZF64/27-127      OS Branchiostoma floridae
#=GS C3ZF64/27-127      DE Uncharacterized protein
#=GS C3ZF64/27-127      DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS B7Q7R2/32-122      AC B7Q7R2
#=GS B7Q7R2/32-122      OS Ixodes scapularis
#=GS B7Q7R2/32-122      DE Regulator of nonsense transcripts 3B, putative
#=GS B7Q7R2/32-122      DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; 
#=GS A0A147BSK1/32-122  AC A0A147BSK1
#=GS A0A147BSK1/32-122  OS Ixodes ricinus
#=GS A0A147BSK1/32-122  DE Putative nonsense-mediated decay protein upf3
#=GS A0A147BSK1/32-122  DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes ricinus; 
#=GS F6VUW6/3-98        AC F6VUW6
#=GS F6VUW6/3-98        OS Ciona intestinalis
#=GS F6VUW6/3-98        DE Uncharacterized protein
#=GS F6VUW6/3-98        DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A0A1W3JE51/18-114  AC A0A1W3JE51
#=GS A0A1W3JE51/18-114  OS Ciona intestinalis
#=GS A0A1W3JE51/18-114  DE regulator of nonsense transcripts 3B-like
#=GS A0A1W3JE51/18-114  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A0A1W4UZX4/21-119  AC A0A1W4UZX4
#=GS A0A1W4UZX4/21-119  OS Drosophila ficusphila
#=GS A0A1W4UZX4/21-119  DE regulator of nonsense transcripts 3B
#=GS A0A1W4UZX4/21-119  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS B4I8V8/21-119      AC B4I8V8
#=GS B4I8V8/21-119      OS Drosophila sechellia
#=GS B4I8V8/21-119      DE GM15496
#=GS B4I8V8/21-119      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B4QB18/21-119      AC B4QB18
#=GS B4QB18/21-119      OS Drosophila simulans
#=GS B4QB18/21-119      DE GD24999
#=GS B4QB18/21-119      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS B4PA93/21-119      AC B4PA93
#=GS B4PA93/21-119      OS Drosophila yakuba
#=GS B4PA93/21-119      DE Uncharacterized protein
#=GS B4PA93/21-119      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GF SQ 16
Q9W1H3/21-119              DKKDKTNQIVKIVMRHLPPTMTEAQFLDQV---GPLPENDSYYYCKADWSLGQEATCRAYIDMSSKDIGEVVQFRDRFDGYVFVDH----KGVEYMAIVEYAPFQC--
Q8T994/21-119              DKKDKTNQIVKIVMRHLPPTMTEAQFLDQV---GPLPENDSYYYCKADWSLGQEATCRAYIDMSSKDIGEVVQFRDRFDGYVFVDH----KGVEYMAIVEYAPFQC--
A7T2J9/1-84                ----------KVVIRRLPPSLKEEELKEYL---GDLPEHDFFYFVDGQMSFGPVLFSRAYINFKNQE--DIIKFRDQFDGSSFFDN----KGKKVFLISQHIS-----
E9H8Q6/21-117              RTKSKEKAPSKVIIRRLPPTMTEEVFLEQI---SPLPDNDFFYFVKGEQQFGVPTFSRAYINFLNLE--EIFTFQDKFDGYVFLDQ----KGTEYPAVVEFAPYQR--
D6W8W1/26-116              --------LTKVVIRRLPPNMDQETFLNQI---SPVPSYDYLYMVKGDASLGENSFSRAYINFVNPN--DIYDFKEKFDNYVFLDS----AGHEYAAVVEFAAFQKIP
Q7Q545/61-159              -KKDAPAPMTRVVIRRLPPTMTEALFCEQIAVDGKLPANDEFYFVGPDWTLGQNASCRAYINFTNPA--DIFRFTDSYDGYTFVDS----KGMEYQAVVEYAPFQG--
F6XS77/3-98                -QREERKLLFKVVMRRLPPGLTEEQFKELI---GTLPPHDYFRFVSGDRTLVPNNFCRAYINFINTD--DIFKFRDRFDGHEFEFK----NGTKHPCVVEFAPFQK--
C3ZF64/27-127              KKKKEEGIPTKVVIRRLPPSLTQETLVEEL---GPLPDHDFFLFVAADMSLVPHAFCRAYINFKNPE--EIISFKDKFDGYIFNDTTSSGKKMEYPAIVEFAPYQK--
B7Q7R2/32-122              --------LTKVVIRRLPPTMSEDQFLDQI---SPVPENDYMYFVKGNKSLGPNAFSRAYINFINQE--EIFIFKEKFDEYVFLDE----KGNEYPAIVEYAPFQKIP
A0A147BSK1/32-122          --------LTKVVIRRLPPTMSEDQFLDQI---SPVPENDYMYFVKGNKSLGPNSFSRAYINFINQD--EIFIFKEKFDEYVFLDE----KGNEYPAIVEYAPFQKIP
F6VUW6/3-98                -QREERKLLFKVVMRRLPPGLTEEQFKELI---GTLPPHDYFRFVSGDRTLVPNNFCRAYINFINTD--DIFKFRDRFDGHEFEFK----NGTKHPCVVEFAPFQK--
A0A1W3JE51/18-114          KRREKTLIQTKVVMRRLPPGLTEEQFKELI---GTLPPHDYFRFVSGDRTLVPNNFCRAYINFINTD--DIFKFRDRFDGHEFEFK----NGTKHPCVVEFAPFQK--
A0A1W4UZX4/21-119          DKKDKTSQIVKIVMRHLPPTMTEADFLDQV---GPLPENDSYYYCSADWSLGQEATCRAYIDMSMKDIAEVLQFRDRFDGYVFVDS----KGVEYVAIVEYAPFQC--
B4I8V8/21-119              DKKDKTNQVVKIVMRHLPPTMTEAQFLDQV---GPLPENDSYYYCKADWSLGQEATCRAYIDMSSKDIDEVLQFRDRFDGYVFVDH----KGVEYMAIVEYAPFQC--
B4QB18/21-119              DKKDKTNQVVKIVMRHLPPTMTEAQFLDQV---GPLPENDSYYYCKPDWSLGQEATCRAYIDMSSKDIDEVLQFRDRFDGYVFVDH----KGVEYMAIVEYAPFQC--
B4PA93/21-119              DKKDKTSQIVKIVMRHLPPTMTEADFLDQV---GPLPENDSYYYCKADWSLGHEATCRAYIDMSSKDITEVLQFRDRFDGYVFVDN----KGVEYMAIVEYAPFQC--
#=GC scorecons             123222113387869699956575474656000657945945565456367544456999966363600775396768966493530000683663577867767300
#=GC scorecons_70          __________*********_*_*__*_*_*___*_**__*___*___*__*_____******_______**__*_*_****_*_______**_**__********___
#=GC scorecons_80          __________***_*_***___*__*_________**__*__________*______****_________*__*_*_**___*________*______**_**_*___
#=GC scorecons_90          __________*_*_*_***_________________*__*_________________****____________*___**___*________________*________
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