# STOCKHOLM 1.0
#=GF ID 3.30.70.330/FF/000669
#=GF DE U2 snRNP auxiliary factor large subunit
#=GF AC 3.30.70.330/FF/000669
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 48.121
#=GS D0MXQ4/317-320_346-397          AC D0MXQ4
#=GS D0MXQ4/317-320_346-397          OS Phytophthora infestans T30-4
#=GS D0MXQ4/317-320_346-397          DE U2 snRNP auxiliary factor large subunit
#=GS D0MXQ4/317-320_346-397          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora infestans; 
#=GS A0A2K3E1G4/1799-1802_1830-1881  AC A0A2K3E1G4
#=GS A0A2K3E1G4/1799-1802_1830-1881  OS Chlamydomonas reinhardtii
#=GS A0A2K3E1G4/1799-1802_1830-1881  DE Uncharacterized protein
#=GS A0A2K3E1G4/1799-1802_1830-1881  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A0A2K3E1C6/1807-1810_1838-1889  AC A0A2K3E1C6
#=GS A0A2K3E1C6/1807-1810_1838-1889  OS Chlamydomonas reinhardtii
#=GS A0A2K3E1C6/1807-1810_1838-1889  DE Uncharacterized protein
#=GS A0A2K3E1C6/1807-1810_1838-1889  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A8I9K7/68-71_99-150             AC A8I9K7
#=GS A8I9K7/68-71_99-150             OS Chlamydomonas reinhardtii
#=GS A8I9K7/68-71_99-150             DE U2 snRNP auxiliary factor, large subunit
#=GS A8I9K7/68-71_99-150             DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A0A1V9YLT1/304-305_326-377      AC A0A1V9YLT1
#=GS A0A1V9YLT1/304-305_326-377      OS Achlya hypogyna
#=GS A0A1V9YLT1/304-305_326-377      DE U2 snRNP auxiliary factor large subunit
#=GS A0A1V9YLT1/304-305_326-377      DR ORG; Eukaryota; Oomycetes; Saprolegniales; Saprolegniaceae; Achlya; Achlya hypogyna; 
#=GS M4B6Z5/286-289_315-366          AC M4B6Z5
#=GS M4B6Z5/286-289_315-366          OS Hyaloperonospora arabidopsidis Emoy2
#=GS M4B6Z5/286-289_315-366          DE U2 snRNP auxiliary factor large subunit
#=GS M4B6Z5/286-289_315-366          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis; 
#=GS A0A080ZRT8/314-317_343-394      AC A0A080ZRT8
#=GS A0A080ZRT8/314-317_343-394      OS Phytophthora parasitica P1976
#=GS A0A080ZRT8/314-317_343-394      DE U2 snRNP auxiliary factor large subunit
#=GS A0A080ZRT8/314-317_343-394      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS H3GIY2/468-471_497-548          AC H3GIY2
#=GS H3GIY2/468-471_497-548          OS Phytophthora ramorum
#=GS H3GIY2/468-471_497-548          DE Uncharacterized protein
#=GS H3GIY2/468-471_497-548          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; 
#=GS A0A0W8DGC9/222-225_251-302      AC A0A0W8DGC9
#=GS A0A0W8DGC9/222-225_251-302      OS Phytophthora nicotianae
#=GS A0A0W8DGC9/222-225_251-302      DE U2 snRNP auxiliary factor large subunit
#=GS A0A0W8DGC9/222-225_251-302      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora nicotianae; 
#=GS A0A329SH97/322-325_351-402      AC A0A329SH97
#=GS A0A329SH97/322-325_351-402      OS Phytophthora cactorum
#=GS A0A329SH97/322-325_351-402      DE U2 snRNP auxiliary factor large subunit
#=GS A0A329SH97/322-325_351-402      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora cactorum; 
#=GS A0A3R7NK17/429-432_458-509      AC A0A3R7NK17
#=GS A0A3R7NK17/429-432_458-509      OS Phytophthora kernoviae
#=GS A0A3R7NK17/429-432_458-509      DE Uncharacterized protein
#=GS A0A3R7NK17/429-432_458-509      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora kernoviae; 
#=GS G4YPL8/442-445_471-522          AC G4YPL8
#=GS G4YPL8/442-445_471-522          OS Phytophthora sojae strain P6497
#=GS G4YPL8/442-445_471-522          DE Uncharacterized protein
#=GS G4YPL8/442-445_471-522          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora sojae; 
#=GS W2YXA1/314-317_343-394          AC W2YXA1
#=GS W2YXA1/314-317_343-394          OS Phytophthora parasitica P10297
#=GS W2YXA1/314-317_343-394          DE U2 snRNP auxiliary factor large subunit
#=GS W2YXA1/314-317_343-394          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2PYB1/314-317_343-394          AC W2PYB1
#=GS W2PYB1/314-317_343-394          OS Phytophthora parasitica INRA-310
#=GS W2PYB1/314-317_343-394          DE U2 snRNP auxiliary factor large subunit
#=GS W2PYB1/314-317_343-394          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A0A0W8E0Q3/393-396_422-473      AC A0A0W8E0Q3
#=GS A0A0W8E0Q3/393-396_422-473      OS Phytophthora nicotianae
#=GS A0A0W8E0Q3/393-396_422-473      DE Splicing factor U2AF 50 kDa subunit
#=GS A0A0W8E0Q3/393-396_422-473      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora nicotianae; 
#=GS W2WLD6/312-315_341-392          AC W2WLD6
#=GS W2WLD6/312-315_341-392          OS Phytophthora parasitica CJ01A1
#=GS W2WLD6/312-315_341-392          DE U2 snRNP auxiliary factor large subunit
#=GS W2WLD6/312-315_341-392          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2GET0/312-315_341-392          AC W2GET0
#=GS W2GET0/312-315_341-392          OS Phytophthora parasitica
#=GS W2GET0/312-315_341-392          DE U2 snRNP auxiliary factor large subunit
#=GS W2GET0/312-315_341-392          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS V9ERF1/312-315_341-392          AC V9ERF1
#=GS V9ERF1/312-315_341-392          OS Phytophthora parasitica P1569
#=GS V9ERF1/312-315_341-392          DE U2 snRNP auxiliary factor large subunit
#=GS V9ERF1/312-315_341-392          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GF SQ 18
D0MXQ4/317-320_346-397                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
A0A2K3E1G4/1799-1802_1830-1881          AAAKNKVYIGGLPACLSEEQVRQILQAFGTLKAFNLVLDRETGNSKGYGFCEYADP
A0A2K3E1C6/1807-1810_1838-1889          AAAKNKVYIGGLPACLSEEQVRQILQAFGTLKAFNLVLDRETGNSKGYGFCEYADP
A8I9K7/68-71_99-150                     AAAKNKVYIGGLPACLSEEQVRQILQAFGTLKAFNLVLDRETGNSKGYGFCEYADP
A0A1V9YLT1/304-305_326-377              G--PGKIFIGGLPYHLNEEQVKELLQAFGPLKSFHLVKELNTNLSKGYGFCEYMDP
M4B6Z5/286-289_315-366                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
A0A080ZRT8/314-317_343-394              ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
H3GIY2/468-471_497-548                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKEVSSNLSKGYGFCEYMDI
A0A0W8DGC9/222-225_251-302              ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
A0A329SH97/322-325_351-402              ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
A0A3R7NK17/429-432_458-509              ATVPGKIFIGGLPYNLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYTDI
G4YPL8/442-445_471-522                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
W2YXA1/314-317_343-394                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
W2PYB1/314-317_343-394                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
A0A0W8E0Q3/393-396_422-473              ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
W2WLD6/312-315_341-392                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
W2GET0/312-315_341-392                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
V9ERF1/312-315_341-392                  ATVPGKIFIGGLPYHLNEEQVKELLQAFGPLRSFHLVKELSSNLSKGYGFCEYMDI
#=GC scorecons                          85555977999994596999976699999697696994745654999999999595
#=GC scorecons_70                       *____********__*_************_**_*_**_*_____*********_*_
#=GC scorecons_80                       *____*_******__*_****___*****_*__*_**_______*********_*_
#=GC scorecons_90                       *____*__*****__*_****___*****_*__*_**_______*********_*_
//