# STOCKHOLM 1.0 #=GF ID 3.30.70.2840/FF/000004 #=GF DE Genome polyprotein #=GF AC 3.30.70.2840/FF/000004 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 71.262 #=GS Q01299/2853-2894 AC Q01299 #=GS Q01299/2853-2894 OS Tick-borne encephalitis virus (strain HYPR) #=GS Q01299/2853-2894 DE Genome polyprotein #=GS Q01299/2853-2894 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS Q01299/2853-2894 DR GO; GO:0039502; GO:0039563; #=GS Q01299/2853-2894 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q2YHF0/2829-2869 AC Q2YHF0 #=GS Q2YHF0/2829-2869 OS Dengue virus 4 Thailand/0348/1991 #=GS Q2YHF0/2829-2869 DE Genome polyprotein #=GS Q2YHF0/2829-2869 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS Q2YHF0/2829-2869 DR GO; GO:0030683; #=GS Q2YHF0/2829-2869 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS G4XII4/2853-2895 AC G4XII4 #=GS G4XII4/2853-2895 OS Tick-borne encephalitis virus #=GS G4XII4/2853-2895 DE Genome polyprotein #=GS G4XII4/2853-2895 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS G4XII4/2853-2895 DR GO; GO:0019079; #=GS P29837/2853-2894 AC P29837 #=GS P29837/2853-2894 OS Langat virus (strain TP21) #=GS P29837/2853-2894 DE Genome polyprotein #=GS P29837/2853-2894 DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; #=GS P29837/2853-2894 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS D7RF80/2855-2896 AC D7RF80 #=GS D7RF80/2855-2896 OS Kyasanur Forest disease virus #=GS D7RF80/2855-2896 DE Genome polyprotein #=GS D7RF80/2855-2896 DR ORG; Viruses; Flaviviridae; Flavivirus; Kyasanur Forest disease virus; #=GS D7RF80/2855-2896 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q7T6D2/2853-2895 AC Q7T6D2 #=GS Q7T6D2/2853-2895 OS Omsk hemorrhagic fever virus #=GS Q7T6D2/2853-2895 DE Genome polyprotein #=GS Q7T6D2/2853-2895 DR ORG; Viruses; Flaviviridae; Flavivirus; Omsk hemorrhagic fever virus; #=GS Q7T6D2/2853-2895 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q32ZD5/2843-2888 AC Q32ZD5 #=GS Q32ZD5/2843-2888 OS Kokobera virus #=GS Q32ZD5/2843-2888 DE Genome polyprotein #=GS Q32ZD5/2843-2888 DR ORG; Viruses; Flaviviridae; Flavivirus; Kokobera virus; #=GS Q32ZD5/2843-2888 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q32ZE1/2858-2899 AC Q32ZE1 #=GS Q32ZE1/2858-2899 OS Zika virus #=GS Q32ZE1/2858-2899 DE Genome polyprotein #=GS Q32ZE1/2858-2899 DR ORG; Viruses; Flaviviridae; Flavivirus; Zika virus; #=GS Q32ZE1/2858-2899 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P14336/2853-2894 AC P14336 #=GS P14336/2853-2894 OS Tick-borne encephalitis virus (WESTERN SUBTYPE) #=GS P14336/2853-2894 DE Genome polyprotein #=GS P14336/2853-2894 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS P14336/2853-2894 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P07720/2851-2893 AC P07720 #=GS P07720/2851-2893 OS Tick-borne encephalitis virus (STRAIN SOFJIN) #=GS P07720/2851-2893 DE Genome polyprotein #=GS P07720/2851-2893 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS P07720/2851-2893 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q91B85/2855-2896 AC Q91B85 #=GS Q91B85/2855-2896 OS Alkhumra hemorrhagic fever virus #=GS Q91B85/2855-2896 DE Genome polyprotein #=GS Q91B85/2855-2896 DR ORG; Viruses; Flaviviridae; Flavivirus; Kyasanur Forest disease virus; #=GS Q91B85/2855-2896 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q88489/2853-2894 AC Q88489 #=GS Q88489/2853-2894 OS Tick-borne encephalitis virus #=GS Q88489/2853-2894 DE Genome polyprotein #=GS Q88489/2853-2894 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS A0A218KFE7/2823-2865 AC A0A218KFE7 #=GS A0A218KFE7/2823-2865 OS Tick-borne encephalitis virus #=GS A0A218KFE7/2823-2865 DE Genome polyprotein #=GS A0A218KFE7/2823-2865 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS A0A075FCA1/2-42 AC A0A075FCA1 #=GS A0A075FCA1/2-42 OS Tick-borne encephalitis virus #=GS A0A075FCA1/2-42 DE NS5 #=GS A0A075FCA1/2-42 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS A0A075FE97/2-42 AC A0A075FE97 #=GS A0A075FE97/2-42 OS Tick-borne encephalitis virus #=GS A0A075FE97/2-42 DE NS5 #=GS A0A075FE97/2-42 DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; #=GS A1X3E5/2318-2359 AC A1X3E5 #=GS A1X3E5/2318-2359 OS Alkhumra hemorrhagic fever virus #=GS A1X3E5/2318-2359 DE Genome polyprotein #=GS A1X3E5/2318-2359 DR ORG; Viruses; Flaviviridae; Flavivirus; Kyasanur Forest disease virus; #=GS A0A076MKM1/2847-2891 AC A0A076MKM1 #=GS A0A076MKM1/2847-2891 OS Stratford virus #=GS A0A076MKM1/2847-2891 DE Genome polyprotein #=GS A0A076MKM1/2847-2891 DR ORG; Viruses; Flaviviridae; Flavivirus; Kokobera virus; #=GS A0A0U4AUH4/114-156 AC A0A0U4AUH4 #=GS A0A0U4AUH4/114-156 OS Zika virus #=GS A0A0U4AUH4/114-156 DE NS5 #=GS A0A0U4AUH4/114-156 DR ORG; Viruses; Flaviviridae; Flavivirus; Zika virus; #=GS A0A1Z1DYI3/2861-2903 AC A0A1Z1DYI3 #=GS A0A1Z1DYI3/2861-2903 OS Zika virus #=GS A0A1Z1DYI3/2861-2903 DE Genome polyprotein #=GS A0A1Z1DYI3/2861-2903 DR ORG; Viruses; Flaviviridae; Flavivirus; Zika virus; #=GS Q2YHE8/2829-2869 AC Q2YHE8 #=GS Q2YHE8/2829-2869 OS Dengue virus 4 #=GS Q2YHE8/2829-2869 DE Genome polyprotein #=GS Q2YHE8/2829-2869 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0LHP6/438-479 AC W0LHP6 #=GS W0LHP6/438-479 OS Dengue virus 4 #=GS W0LHP6/438-479 DE Polyprotein #=GS W0LHP6/438-479 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS B1P6D9/123-164 AC B1P6D9 #=GS B1P6D9/123-164 OS Dengue virus 4 #=GS B1P6D9/123-164 DE Nonstructural protein 5 #=GS B1P6D9/123-164 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0LLR3/1040-1081 AC W0LLR3 #=GS W0LLR3/1040-1081 OS Dengue virus 4 #=GS W0LLR3/1040-1081 DE Polyprotein #=GS W0LLR3/1040-1081 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0LLR9/1904-1945 AC W0LLR9 #=GS W0LLR9/1904-1945 OS Dengue virus 4 #=GS W0LLR9/1904-1945 DE Polyprotein #=GS W0LLR9/1904-1945 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0LHQ3/2469-2509 AC W0LHQ3 #=GS W0LHQ3/2469-2509 OS Dengue virus 4 #=GS W0LHQ3/2469-2509 DE Genome polyprotein #=GS W0LHQ3/2469-2509 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0LLY0/2829-2869 AC W0LLY0 #=GS W0LLY0/2829-2869 OS Dengue virus 4 #=GS W0LLY0/2829-2869 DE Genome polyprotein #=GS W0LLY0/2829-2869 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GF SQ 26 Q01299/2853-2894 -------MAMTDTTAFGQQRVFKDKVDTKAQEPQPGTRVIMRAVNDWIL- Q2YHF0/2829-2869 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRVVMTTTANWLW- G4XII4/2853-2895 -------MAMTDTTAFGQQRVFKEKVDTKAQEPQPGTKVIMRAVNDWILE P29837/2853-2894 -------MAMTDTTAFGQQRVFKDKVDTKAQEPQPGTKIIMRAVNDWLL- D7RF80/2855-2896 -------MAMTDTTAFGQQRVFKEKVDTKAQEPQVGTKIIMRAVNDWIF- Q7T6D2/2853-2895 -------MAMTDTTAFGQQRVFKDKVDTKAQEPQPGTRVIMRAVNDWMFE Q32ZD5/2843-2888 VSSEVTGMSMTDTTPFGQQRVFKEKVDTKAPEPPAGAEMASVIVSE---- Q32ZE1/2858-2899 -------IAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMNIVSSWLW- P14336/2853-2894 -------MAMTDTTAFGQQRVFKDKVDTKAQEPQPGTRVIMRAVNDWIL- P07720/2851-2893 -------MAMTDTTAFGQQRVFKEKVDTKAQEPQPGTKVIMRAVNDWILE Q91B85/2855-2896 -------MAMTDTTAFGQQRVFKEKVDTKAQEPQVGTKIIMRAVNDWIL- Q88489/2853-2894 -------MAMTDTTAFGQQRVFKDKVDTKAQEPQPGTRVIMRAVNDWIL- A0A218KFE7/2823-2865 -------MAMTDTTAFGQQRVFKEKVDTKAQEPQPGTKVIMRAVNDWILE A0A075FCA1/2-42 --------AMTDTTAFGQQRVFKDKVDTKAQEPQPGTRVIMRAVNDWIL- A0A075FE97/2-42 --------AMTDTTAFGQQRVFKDKVDTKAQEPQPGTRVIMRAVNDWIL- A1X3E5/2318-2359 -------MAMTDTTAFGQQRVFKEKVDTKAQEPQVGTKIIMRAVNDWIL- A0A076MKM1/2847-2891 VISEVTGMSMTDTTPFGQQRVFKEKVDTKAPEPPPGAEMATIIVS----- A0A0U4AUH4/114-156 ------GIAMTDTTPYGQERVFKEKVDTRVPDPQEGTRQVMSMVSSWLW- A0A1Z1DYI3/2861-2903 ------GIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMSIVSSWLW- Q2YHE8/2829-2869 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRVVMTTTANWLW- W0LHP6/438-479 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRVVMTTTANWLWT B1P6D9/123-164 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRMIMTTTANWLWA W0LLR3/1040-1081 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRVVMTTTANWLWA W0LLR9/1904-1945 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRVVMTTTANWLWA W0LHQ3/2469-2509 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRAVMTTTANWLW- W0LLY0/2829-2869 --------AMTDTTPFGQQRVFKEKVDTRTPQPKPGTRVVMTTTANWLW- #=GC scorecons 00000002799999689989999799997556955976567456546430 #=GC scorecons_70 ________******_**************___*__***__*__*__*___ #=GC scorecons_80 ________******_*************____*__**___*_________ #=GC scorecons_90 _________*****_********_****____*__*______________ //