# STOCKHOLM 1.0 #=GF ID 3.30.70.2840/FF/000003 #=GF DE Genome polyprotein #=GF AC 3.30.70.2840/FF/000003 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 61.566 #=GS P06935/2857-2904 AC P06935 #=GS P06935/2857-2904 OS West Nile virus #=GS P06935/2857-2904 DE Genome polyprotein #=GS P06935/2857-2904 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS P06935/2857-2904 DR GO; GO:0003677; GO:0003723; GO:0004483; GO:0005515; GO:0008233; GO:0019050; GO:0032993; GO:0033592; GO:0043489; GO:0045070; GO:0106005; GO:1990814; GO:1990904; #=GS P06935/2857-2904 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q9Q6P4/2860-2907 AC Q9Q6P4 #=GS Q9Q6P4/2860-2907 OS West Nile virus strain NY-99 #=GS Q9Q6P4/2860-2907 DE Genome polyprotein #=GS Q9Q6P4/2860-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS Q9Q6P4/2860-2907 DR GO; GO:0004483; #=GS Q9Q6P4/2860-2907 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P03314/2839-2886 AC P03314 #=GS P03314/2839-2886 OS Yellow fever virus 17D #=GS P03314/2839-2886 DE Genome polyprotein #=GS P03314/2839-2886 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS P03314/2839-2886 DR GO; GO:0019031; #=GS P03314/2839-2886 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P27395/2858-2906 AC P27395 #=GS P27395/2858-2906 OS Japanese encephalitis virus strain SA-14 #=GS P27395/2858-2906 DE Genome polyprotein #=GS P27395/2858-2906 DR ORG; Viruses; Flaviviridae; Flavivirus; Japanese encephalitis virus; #=GS P27395/2858-2906 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P27909/2822-2873 AC P27909 #=GS P27909/2822-2873 OS Dengue virus 1 Brazil/97-11/1997 #=GS P27909/2822-2873 DE Genome polyprotein #=GS P27909/2822-2873 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS P27909/2822-2873 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P14335/2860-2907 AC P14335 #=GS P14335/2860-2907 OS Kunjin virus (STRAIN MRM61C) #=GS P14335/2860-2907 DE Genome polyprotein #=GS P14335/2860-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS P14335/2860-2907 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS G3FEX6/2857-2906 AC G3FEX6 #=GS G3FEX6/2857-2906 OS Japanese encephalitis virus strain M28 #=GS G3FEX6/2857-2906 DE Genome polyprotein #=GS G3FEX6/2857-2906 DR ORG; Viruses; Flaviviridae; Flavivirus; Japanese encephalitis virus; #=GS G3FEX6/2857-2906 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q5I6T5/2860-2907 AC Q5I6T5 #=GS Q5I6T5/2860-2907 OS West Nile virus strain 385-99 #=GS Q5I6T5/2860-2907 DE Genome polyprotein #=GS Q5I6T5/2860-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS Q5I6T5/2860-2907 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS A0A3G5ALR9/2860-2907 AC A0A3G5ALR9 #=GS A0A3G5ALR9/2860-2907 OS West Nile virus #=GS A0A3G5ALR9/2860-2907 DE Genome polyprotein #=GS A0A3G5ALR9/2860-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS A0A3G5ALR9/2860-2907 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q6J3P1/2837-2886 AC Q6J3P1 #=GS Q6J3P1/2837-2886 OS Yellow fever virus isolate Ivory Coast/1999 #=GS Q6J3P1/2837-2886 DE Genome polyprotein #=GS Q6J3P1/2837-2886 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS Q6J3P1/2837-2886 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q1X881/2840-2887 AC Q1X881 #=GS Q1X881/2840-2887 OS Yellow fever virus isolate Angola/14FA/1971 #=GS Q1X881/2840-2887 DE Genome polyprotein #=GS Q1X881/2840-2887 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS Q1X881/2840-2887 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q98803/2837-2886 AC Q98803 #=GS Q98803/2837-2886 OS Yellow fever virus isolate Ivory Coast/85-82H/1982 #=GS Q98803/2837-2886 DE Genome polyprotein #=GS Q98803/2837-2886 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS Q98803/2837-2886 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q6DV88/2839-2886 AC Q6DV88 #=GS Q6DV88/2839-2886 OS Yellow fever virus strain Ghana/Asibi/1927 #=GS Q6DV88/2839-2886 DE Genome polyprotein #=GS Q6DV88/2839-2886 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS Q6DV88/2839-2886 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS V5TFE4/2839-2886 AC V5TFE4 #=GS V5TFE4/2839-2886 OS Yellow fever virus #=GS V5TFE4/2839-2886 DE Genome polyprotein #=GS V5TFE4/2839-2886 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS V5TFE4/2839-2886 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q074N0/2840-2887 AC Q074N0 #=GS Q074N0/2840-2887 OS Yellow fever virus isolate Ethiopia/Couma/1961 #=GS Q074N0/2840-2887 DE Genome polyprotein #=GS Q074N0/2840-2887 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS Q074N0/2840-2887 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q1X880/2840-2887 AC Q1X880 #=GS Q1X880/2840-2887 OS Yellow fever virus isolate Uganda/A7094A4/1948 #=GS Q1X880/2840-2887 DE Genome polyprotein #=GS Q1X880/2840-2887 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS Q1X880/2840-2887 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P33478/2820-2871 AC P33478 #=GS P33478/2820-2871 OS Dengue virus 1 Singapore/S275/1990 #=GS P33478/2820-2871 DE Genome polyprotein #=GS P33478/2820-2871 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS P33478/2820-2871 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS P17763/2822-2872 AC P17763 #=GS P17763/2822-2872 OS Dengue virus 1 Nauru/West Pac/1974 #=GS P17763/2822-2872 DE Genome polyprotein #=GS P17763/2822-2872 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS P17763/2822-2872 DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; #=GS Q5SBG8/2860-2907 AC Q5SBG8 #=GS Q5SBG8/2860-2907 OS West Nile virus #=GS Q5SBG8/2860-2907 DE Genome polyprotein #=GS Q5SBG8/2860-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS O90417/2858-2906 AC O90417 #=GS O90417/2858-2906 OS Japanese encephalitis virus #=GS O90417/2858-2906 DE Genome polyprotein #=GS O90417/2858-2906 DR ORG; Viruses; Flaviviridae; Flavivirus; Japanese encephalitis virus; #=GS A7TZT4/2860-2907 AC A7TZT4 #=GS A7TZT4/2860-2907 OS West Nile virus #=GS A7TZT4/2860-2907 DE Genome polyprotein #=GS A7TZT4/2860-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS Q8JU44/2860-2907 AC Q8JU44 #=GS Q8JU44/2860-2907 OS West Nile virus #=GS Q8JU44/2860-2907 DE Genome polyprotein #=GS Q8JU44/2860-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS Q3I100/2859-2907 AC Q3I100 #=GS Q3I100/2859-2907 OS West Nile virus #=GS Q3I100/2859-2907 DE Genome polyprotein #=GS Q3I100/2859-2907 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS A0A067ZS80/2792-2839 AC A0A067ZS80 #=GS A0A067ZS80/2792-2839 OS West Nile virus #=GS A0A067ZS80/2792-2839 DE Genome polyprotein #=GS A0A067ZS80/2792-2839 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS A0A067ZS69/2856-2903 AC A0A067ZS69 #=GS A0A067ZS69/2856-2903 OS West Nile virus #=GS A0A067ZS69/2856-2903 DE Genome polyprotein #=GS A0A067ZS69/2856-2903 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS I1TEC3/101-148 AC I1TEC3 #=GS I1TEC3/101-148 OS Kunjin virus #=GS I1TEC3/101-148 DE Polymerase #=GS I1TEC3/101-148 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS B9DF75/694-742 AC B9DF75 #=GS B9DF75/694-742 OS West Nile virus strain PT6.39 #=GS B9DF75/694-742 DE Polyprotein #=GS B9DF75/694-742 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS B1P6F1/112-159 AC B1P6F1 #=GS B1P6F1/112-159 OS Kunjin virus #=GS B1P6F1/112-159 DE Nonstructural protein 5 #=GS B1P6F1/112-159 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS F1BA45/1354-1402 AC F1BA45 #=GS F1BA45/1354-1402 OS West Nile virus #=GS F1BA45/1354-1402 DE Genome polyprotein #=GS F1BA45/1354-1402 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS A3E1B5/2099-2148 AC A3E1B5 #=GS A3E1B5/2099-2148 OS Japanese encephalitis virus #=GS A3E1B5/2099-2148 DE Genome polyprotein #=GS A3E1B5/2099-2148 DR ORG; Viruses; Flaviviridae; Flavivirus; Japanese encephalitis virus; #=GS K9L2G3/1100-1147 AC K9L2G3 #=GS K9L2G3/1100-1147 OS West Nile virus #=GS K9L2G3/1100-1147 DE Polyprotein #=GS K9L2G3/1100-1147 DR ORG; Viruses; Flaviviridae; Flavivirus; West Nile virus; #=GS V5IV53/331-380 AC V5IV53 #=GS V5IV53/331-380 OS Yellow fever virus #=GS V5IV53/331-380 DE Polyprotein #=GS V5IV53/331-380 DR ORG; Viruses; Flaviviridae; Flavivirus; Yellow fever virus; #=GS Q9J7C6/2822-2872 AC Q9J7C6 #=GS Q9J7C6/2822-2872 OS Dengue virus 1 #=GS Q9J7C6/2822-2872 DE Genome polyprotein #=GS Q9J7C6/2822-2872 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS G3F5K5/2820-2872 AC G3F5K5 #=GS G3F5K5/2820-2872 OS Dengue virus 1 #=GS G3F5K5/2820-2872 DE Genome polyprotein #=GS G3F5K5/2820-2872 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS Q91NH1/2822-2872 AC Q91NH1 #=GS Q91NH1/2822-2872 OS Dengue virus 1 #=GS Q91NH1/2822-2872 DE Genome polyprotein #=GS Q91NH1/2822-2872 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS I6XG39/2822-2873 AC I6XG39 #=GS I6XG39/2822-2873 OS Dengue virus 1 #=GS I6XG39/2822-2873 DE Genome polyprotein #=GS I6XG39/2822-2873 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS Q689G3/2822-2873 AC Q689G3 #=GS Q689G3/2822-2873 OS Dengue virus 1 #=GS Q689G3/2822-2873 DE Genome polyprotein #=GS Q689G3/2822-2873 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS A0A173QS32/93-145 AC A0A173QS32 #=GS A0A173QS32/93-145 OS Dengue virus #=GS A0A173QS32/93-145 DE Partial RNA dependent RNA polymerase #=GS A0A173QS32/93-145 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0FSP1/1546-1597 AC W0FSP1 #=GS W0FSP1/1546-1597 OS Dengue virus 1 #=GS W0FSP1/1546-1597 DE Genome polyprotein #=GS W0FSP1/1546-1597 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0LLG3/2819-2871 AC W0LLG3 #=GS W0LLG3/2819-2871 OS Dengue virus 1 #=GS W0LLG3/2819-2871 DE Genome polyprotein #=GS W0LLG3/2819-2871 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GS W0LMA1/2821-2872 AC W0LMA1 #=GS W0LMA1/2821-2872 OS Dengue virus 1 #=GS W0LMA1/2821-2872 DE Polyprotein #=GS W0LMA1/2821-2872 DR ORG; Viruses; Flaviviridae; Flavivirus; Dengue virus; #=GF SQ 41 P06935/2857-2904 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- Q9Q6P4/2860-2907 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- P03314/2839-2886 ----WDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVNR--- P27395/2858-2906 -SKPWDAIANVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPAGAKEVLNET----- P27909/2822-2873 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPRAKRGTAQIMEVTAKWL- P14335/2860-2907 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- G3FEX6/2857-2906 MSKPWDAIANVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPAGVKEVLNET----- Q5I6T5/2860-2907 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- A0A3G5ALR9/2860-2907 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- Q6J3P1/2837-2886 --YPWDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVNR--- Q1X881/2840-2887 ----WDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVNR--- Q98803/2837-2886 --YPWDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVNR--- Q6DV88/2839-2886 ----WDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVNR--- V5TFE4/2839-2886 ----WDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVNR--- Q074N0/2840-2887 ----WDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVNR--- Q1X880/2840-2887 ----WDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMRVVNR--- P33478/2820-2871 -TKPWDAIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTAQIMEVTARW-- P17763/2822-2872 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTAQIMEVTARW-- Q5SBG8/2860-2907 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- O90417/2858-2906 -SKPWDAIANVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPAGVREVLNET----- A7TZT4/2860-2907 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- Q8JU44/2860-2907 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- Q3I100/2859-2907 -SKPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- A0A067ZS80/2792-2839 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- A0A067ZS69/2856-2903 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- I1TEC3/101-148 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- B9DF75/694-742 -SKPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- B1P6F1/112-159 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- F1BA45/1354-1402 -SKPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- A3E1B5/2099-2148 MSKPWDAIANVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPAGAKEVLNET----- K9L2G3/1100-1147 --KPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLNET----- V5IV53/331-380 --YPWDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPTGTRKIMKVVNR--- Q9J7C6/2822-2872 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTAQIMEVTARW-- G3F5K5/2820-2872 LTKPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTAQIMEVTARW-- Q91NH1/2822-2872 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTAQVMEVTARW-- I6XG39/2822-2873 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPRAKRGTAQIMEVTAKWL- Q689G3/2822-2873 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTAQIMEVTAKWL- A0A173QS32/93-145 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPRAKRGTAQIMEVTAKWLW W0FSP1/1546-1597 -TKPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTVQIMEVTARW-- W0LLG3/2819-2871 LTKPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPKAKRGTAQIMEVTARW-- W0LMA1/2821-2872 --KPWDVIPMVTQIAMTDTTPFGQQRVFKEKVDTRTPRAKRGTTQIMEVTAKWL- #=GC scorecons 0056994944994799999999999999999999766565495447655612000 #=GC scorecons_70 ____**_*__**_***********************__*__*___**__*_____ #=GC scorecons_80 ____**_*__**__*********************______*_____________ #=GC scorecons_90 ____**_*__**__********************_______*_____________ //