# STOCKHOLM 1.0 #=GF ID 3.30.420.10/FF/000139 #=GF DE Ribonuclease HII #=GF AC 3.30.420.10/FF/000139 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 92.681 #=GS 2dfhA01/2-161 AC O74035 #=GS 2dfhA01/2-161 OS Thermococcus kodakarensis KOD1 #=GS 2dfhA01/2-161 DE Ribonuclease HII #=GS 2dfhA01/2-161 DR CATH; 2dfh; A:2-161; #=GS 2dfhA01/2-161 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS 2dfhA01/2-161 DR EC; 3.1.26.4; #=GS 2dffA01/2-161 AC O74035 #=GS 2dffA01/2-161 OS Thermococcus kodakarensis KOD1 #=GS 2dffA01/2-161 DE Ribonuclease HII #=GS 2dffA01/2-161 DR CATH; 2dff; A:2-161; #=GS 2dffA01/2-161 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS 2dffA01/2-161 DR EC; 3.1.26.4; #=GS 2dfeA01/2-161 AC O74035 #=GS 2dfeA01/2-161 OS Thermococcus kodakarensis KOD1 #=GS 2dfeA01/2-161 DE Ribonuclease HII #=GS 2dfeA01/2-161 DR CATH; 2dfe; A:2-161; #=GS 2dfeA01/2-161 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS 2dfeA01/2-161 DR EC; 3.1.26.4; #=GS 1x1pA01/2-161 AC O74035 #=GS 1x1pA01/2-161 OS Thermococcus kodakarensis KOD1 #=GS 1x1pA01/2-161 DE Ribonuclease HII #=GS 1x1pA01/2-161 DR CATH; 1x1p; A:2-161; #=GS 1x1pA01/2-161 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS 1x1pA01/2-161 DR EC; 3.1.26.4; #=GS 1io2A01/2-161 AC O74035 #=GS 1io2A01/2-161 OS Thermococcus kodakarensis KOD1 #=GS 1io2A01/2-161 DE Ribonuclease HII #=GS 1io2A01/2-161 DR CATH; 1io2; A:2-161; #=GS 1io2A01/2-161 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS 1io2A01/2-161 DR EC; 3.1.26.4; #=GS 1ekeB01/1-175 AC Q57599 #=GS 1ekeB01/1-175 OS Methanocaldococcus jannaschii DSM 2661 #=GS 1ekeB01/1-175 DE Ribonuclease HII #=GS 1ekeB01/1-175 DR CATH; 1eke; B:2-175; #=GS 1ekeB01/1-175 DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; #=GS 1ekeB01/1-175 DR EC; 3.1.26.4; #=GS 1ekeA01/1-175 AC Q57599 #=GS 1ekeA01/1-175 OS Methanocaldococcus jannaschii DSM 2661 #=GS 1ekeA01/1-175 DE Ribonuclease HII #=GS 1ekeA01/1-175 DR CATH; 1eke; A:2-175; #=GS 1ekeA01/1-175 DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; #=GS 1ekeA01/1-175 DR EC; 3.1.26.4; #=GS Q57599/1-175 AC Q57599 #=GS Q57599/1-175 OS Methanocaldococcus jannaschii DSM 2661 #=GS Q57599/1-175 DE Ribonuclease HII #=GS Q57599/1-175 DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; #=GS Q57599/1-175 DR EC; 3.1.26.4; #=GS Q8TPF4/1-172 AC Q8TPF4 #=GS Q8TPF4/1-172 OS Methanosarcina acetivorans C2A #=GS Q8TPF4/1-172 DE Ribonuclease HII #=GS Q8TPF4/1-172 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; #=GS Q8TPF4/1-172 DR EC; 3.1.26.4; #=GS O74035/2-161 AC O74035 #=GS O74035/2-161 OS Thermococcus kodakarensis KOD1 #=GS O74035/2-161 DE Ribonuclease HII #=GS O74035/2-161 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS O74035/2-161 DR EC; 3.1.26.4; #=GS Q54ZA4/115-306 AC Q54ZA4 #=GS Q54ZA4/115-306 OS Dictyostelium discoideum #=GS Q54ZA4/115-306 DE Ribonuclease #=GS Q54ZA4/115-306 DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; #=GS B1L3S7/1-161 AC B1L3S7 #=GS B1L3S7/1-161 OS Candidatus Korarchaeum cryptofilum OPF8 #=GS B1L3S7/1-161 DE Ribonuclease #=GS B1L3S7/1-161 DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; #=GS A9A3M7/1-162 AC A9A3M7 #=GS A9A3M7/1-162 OS Nitrosopumilus maritimus SCM1 #=GS A9A3M7/1-162 DE Ribonuclease HII #=GS A9A3M7/1-162 DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; #=GS A0BL27/3-190 AC A0BL27 #=GS A0BL27/3-190 OS Paramecium tetraurelia #=GS A0BL27/3-190 DE Ribonuclease #=GS A0BL27/3-190 DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; #=GS F0ZWY3/1-172 AC F0ZWY3 #=GS F0ZWY3/1-172 OS Dictyostelium purpureum #=GS F0ZWY3/1-172 DE Ribonuclease #=GS F0ZWY3/1-172 DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium purpureum; #=GS Q8PTA3/1-171 AC Q8PTA3 #=GS Q8PTA3/1-171 OS Methanosarcina mazei Go1 #=GS Q8PTA3/1-171 DE Ribonuclease HII #=GS Q8PTA3/1-171 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS Q8PTA3/1-171 DR EC; 3.1.26.4; #=GS A0A0E3NQU9/1-169 AC A0A0E3NQU9 #=GS A0A0E3NQU9/1-169 OS Methanosarcina sp. WH1 #=GS A0A0E3NQU9/1-169 DE Ribonuclease HII #=GS A0A0E3NQU9/1-169 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. WH1; #=GS A0A0F8C6T0/1-170 AC A0A0F8C6T0 #=GS A0A0F8C6T0/1-170 OS Methanosarcina sp. 2.H.A.1B.4 #=GS A0A0F8C6T0/1-170 DE Ribonuclease HII #=GS A0A0F8C6T0/1-170 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. 2.H.A.1B.4; #=GS A0A0E3WUN2/1-169 AC A0A0E3WUN2 #=GS A0A0E3WUN2/1-169 OS Methanosarcina horonobensis HB-1 = JCM 15518 #=GS A0A0E3WUN2/1-169 DE Ribonuclease HII #=GS A0A0E3WUN2/1-169 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina horonobensis; #=GS A0A0E3R904/1-171 AC A0A0E3R904 #=GS A0A0E3R904/1-171 OS Methanosarcina mazei SarPi #=GS A0A0E3R904/1-171 DE Ribonuclease HII #=GS A0A0E3R904/1-171 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS A0A0E3R904/1-171 DR EC; 3.1.26.4; #=GS A0A0E3RGR5/1-171 AC A0A0E3RGR5 #=GS A0A0E3RGR5/1-171 OS Methanosarcina mazei S-6 #=GS A0A0E3RGR5/1-171 DE Ribonuclease HII #=GS A0A0E3RGR5/1-171 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS A0A0E3RGR5/1-171 DR EC; 3.1.26.4; #=GF SQ 21 2dfhA01/2-161 ----------------------KIAGIDEAGRGPVIGPMVIAAVVVD-ENSLPKLEELKVRDSKKLTPKRRE--KLFNEILGVLDDYVILELPPDVIGSREG--T---LNEFEVENFAKALNSL------KVKPDVIYADAADVDEERFARELGERL-------NFEAE-VVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE---- 2dffA01/2-161 ----------------------KIAGIDEAGRGPVIGPMVIAAVVVD-ENSLPKLEELKVRDSKKLTPKRRE--KLFNEILGVLDDYVILELPPDVIGSREG--T---LNEFEVENFAKALNSL------KVKPDVIYADAADVDEERFARELGERL-------NFEAE-VVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE---- 2dfeA01/2-161 ----------------------KIAGIDEAGRGPVIGPMVIAAVVVD-ENSLPKLEELKVRDSKKLTPKRRE--KLFNEILGVLDDYVILELPPDVIGSREG--T---LNEFEVENFAKALNSL------KVKPDVIYADAADVDEERFARELGERL-------NFEAE-VVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE---- 1x1pA01/2-161 ----------------------KIAGIDEAGRGPVIGPMVIAAVVVD-ENSLPKLEELKVRDSKKLTPKRRE--KLFNEILGVLDDYVILELPPDVIGSREG--T---LNEFEVENFAKALNSL------KVKPDVIYADAADVDEERFARELGERL-------NFEAE-VVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE---- 1io2A01/2-161 ----------------------KIAGIDEAGRGPVIGPMVIAAVVVD-ENSLPKLEELKVRDSKKLTPKRRE--KLFNEILGVLDDYVILELPPDVIGSREG--T---LNEFEVENFAKALNSL------KVKPDVIYADAADVDEERFARELGERL-------NFEAE-VVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE---- 1ekeB01/1-175 ---------------------XIIIGIDEAGRGPVLGPXVVCAFAIE-KEREEELKKLGVKDSKELTKNKRA--YL-KKLLENLGYVEKRILEAEEINQLXNSIN---LNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIK-IIAEHKADAKYPVVSAASIIAKAERDEIIDYYKK---- 1ekeA01/1-175 ---------------------XIIIGIDEAGRGPVLGPXVVCAFAIE-KEREEELKKLGVKDSKELTKNKRA--YL-KKLLENLGYVEKRILEAEEINQLXNSIN---LNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIK-IIAEHKADAKYPVVSAASIIAKAERDEIIDYYKK---- Q57599/1-175 ---------------------MIIIGIDEAGRGPVLGPMVVCAFAIE-KEREEELKKLGVKDSKELTKNKRA--YL-KKLLENLGYVEKRILEAEEINQLMNSIN---LNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIK-IIAEHKADAKYPVVSAASIIAKAERDEIIDYYKK---- Q8TPF4/1-172 ---------------------MMIAGIDEAGKGPVIGPMCIGGVKIE-ESRAHILKVLGVADSKKLTPKKRE--QLASQIKKHADGFFILEITPAQIDELRKIMS---MNEIMVICFAKVLEQL--------KPDIVYADAADVKAERFAENLRRQYAKTNPAHAKKIE-IISMHQADAIYPVVSAASIIAKVRRDELIEEIKKEWSV O74035/2-161 ----------------------KIAGIDEAGRGPVIGPMVIAAVVVD-ENSLPKLEELKVRDSKKLTPKRRE--KLFNEILGVLDDYVILELPPDVIGSREG--T---LNEFEVENFAKALNSL------KVKPDVIYADAADVDEERFARELGERL-------NFEAE-VVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE---- Q54ZA4/115-306 NLMVQPKTSYKDKLEVFEE--VLSISMDEAGKGALLGPLFISCVVLD-DESEKYLKSMGVTDSKKLSPKRRE--YLYDIIIEHALYYQTIILTSEKIDQRRELHT---MNQIETNLFYQLIKDSINNLP-KNQQCKIIIDSIEMNTQKYSQPFKMEFPPPL------YQ-IYCETKADHKFISVGAASIIAKVERDRWMKQLETNTSH B1L3S7/1-161 ------------------------MGIDEAGRGPVIGPMVVAAVILK-RREAKRLKEMGVTDSKLLSAERRE--ELFPMIIESAESYLIKVIEPKRIDEAVSKNM---LNLLEAEVMSELIREL--------RPARVIVDSPMRNCRKFSDVLREFLGDSS------VK-IIAENKADSKYIQVASASIIAKVERDRRIRELSELT-- A9A3M7/1-162 ---------------------MQICGVDDAGRGSMLGPLVISGISIN-KKNLRKLSSLGVKDSKKLSPKSRE--LLYKQIIELVDDYYIAKITPRSIDASVKKHG---LNELEAKYMAKVVLKL--------DPDTSYVDSCDVNPKRFGKEISKL--------SDNHK-IKSYHHADSRFVVVSAASIIAKVTRDRAIEKLRKTY-- A0BL27/3-190 VFNNNSSDELPQNLEDLKANSEWILGIFEAGRGPLIGPIIIAGCFWPITNHNYIVKQCSLSLNKQFYQNQVESSEIISKLKGKALQFETIEISAQKLSTKILAYTPSDVNEISLNYTLQLIKNI--------LSKGYKIIECYINPIGFKENLNEVLKKGLGLGNNDLKFIVGMHQ------TIIAAQIVSLQERNTRLLQI------ F0ZWY3/1-172 ----------------------LTISIDEAGKGSLLGPLVVSCVVMD-SKTEQLFKEQGVKDSKQLSPLKRE--SLYNLISEKSIYHQTIILSNHDIDKRRSLHT---LNEIETNIFYQLIKDSILNLA-KNQPVKVILDSIESNSEKYSLPFKSYFGSPT------CE-IICETKADIKYTSVGAASILAKVKRDQFIKSLEIELDQ Q8PTA3/1-171 ---------------------MMIAGIDEAGKGPVIGPMCIGGVKID-ESKAHILKVLGVADSKKLTPKKRE--QLASQIKKHADGYFIFEVSPSQIDELRKIMS---MNEIMVVCFAKVLEQL--------KPDIVYADAADVKAERFAENLLRQYAKTSPDHAKKIK-VVSMHQADAIYPVVSAASIIAKVRRDELIEELKREWC- A0A0E3NQU9/1-169 ---------------------MIIAGIDEAGKGPVIGPMCIGGVKID-ESKAHILKVLGVVDSKKLTPKKRE--QLAVQIKKHADGFFVLEVSPSQIDELRKIMS---MNEIMVVCFAKVLEQL--------KPDIVYADAADVKAERFGENLRRQYAKTSPDHAKKIE-IISMHQADAIYPVASAASIIAKVRRDELIEELKKE--- A0A0F8C6T0/1-170 ---------------------MIIAGIDEAGKGPVIGPMCIGGVKID-ESKAHILKVLGVADSKKLTPKKRE--QLAAQIKKHADGFFVLEISPSQIDELRKIMT---MNEIMVVCFAKVLEQL--------KPDIVYADAADVKAERFAENLRRQYAKTSPDHAKKIE-IVSMHQADATYPVVSAASIIAKVRRDELIEELKKEW-- A0A0E3WUN2/1-169 ---------------------MMIAGIDEAGKGPVIGPMCIGGVKID-ESKAHILKVLGVADSKKLTPKKRE--QLAAQIKKHAEGYFILEVSPSQIDELRKIMS---MNEIMVVCFAKVLEQL--------KPDIVYADAADVKAERFAENLRRQYAKTSPDHAKKIE-IISMHQADAIYPIVSAASIIAKVRRDELIEELKKE--- A0A0E3R904/1-171 ---------------------MMIAGIDEAGKGPVIGPMCIGGVKID-ESKAHILKVLGVADSKKLTPKKRE--QLASQIKKHADGYFIFEVSPSQIDELRKIMS---MNEIMVVCFAKVLEQL--------KPDIVYADAADVKAERFAENLLRQYAKTSPDHAKKIK-VVSMHQADAIYPVVSAASIIAKVRRDELIEELKREWC- A0A0E3RGR5/1-171 ---------------------MMIAGIDEAGKGPVIGPMCIGGVKID-ESKAHILKVLGVADSKKLTPKKRE--QLASQIKKHADGYFIFEVSPSQIDELRKIMS---MNEIMVVCFAKVLEQL--------KPDIVYADAADVKAERFAENLLRQYAKTSPDHAKKIK-VVSMHQADAIYPVVSAASIIAKVRRDELIEELKREWC- #=GC scorecons 0000000000000000000001364787899797669955745635505443337636584789585556770038244745354353534645438544332250006966554364655446000000114543555764555356844463434122111132345075536677336558689796876498536546531000 #=GC scorecons_70 _______________________*_*************__*_____________**___*_***_*____**___*___*________________*___________***_____*_*____*_______________*_______**___*_________________*___****__*__**********_**__*_________ #=GC scorecons_80 _________________________******_**__**__*_____________*____*_***_*____*____*____________________*____________*_____________________________*________*_____________________*_____**_____*_****_**__**____________ #=GC scorecons_90 ____________________________***_*___**_____________________*__**_*_________*____________________*____________*______________________________________*____________________________________**_*_*___**____________ //