# STOCKHOLM 1.0 #=GF ID 3.30.2350.20/FF/000008 #=GF DE tRNA pseudouridine synthase D #=GF AC 3.30.2350.20/FF/000008 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 84.052 #=GS O67616/1-184 AC O67616 #=GS O67616/1-184 OS Aquifex aeolicus VF5 #=GS O67616/1-184 DE tRNA pseudouridine synthase D #=GS O67616/1-184 DR ORG; Bacteria; Aquificae; Aquificae; Aquificales; Aquificaceae; Aquifex; Aquifex aeolicus; #=GS O67616/1-184 DR EC; 5.4.99.27; #=GS Q5HSX3/22-171 AC Q5HSX3 #=GS Q5HSX3/22-171 OS Campylobacter jejuni RM1221 #=GS Q5HSX3/22-171 DE tRNA pseudouridine synthase D #=GS Q5HSX3/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; #=GS Q5HSX3/22-171 DR GO; GO:0006400; GO:0009982; #=GS Q5HSX3/22-171 DR EC; 5.4.99.27; #=GS P55985/21-171 AC P55985 #=GS P55985/21-171 OS Helicobacter pylori 26695 #=GS P55985/21-171 DE tRNA pseudouridine synthase D #=GS P55985/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS P55985/21-171 DR EC; 5.4.99.27; #=GS Q9PMK3/22-171 AC Q9PMK3 #=GS Q9PMK3/22-171 OS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 #=GS Q9PMK3/22-171 DE tRNA pseudouridine synthase D #=GS Q9PMK3/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; Campylobacter jejuni subsp. jejuni; #=GS Q9PMK3/22-171 DR EC; 5.4.99.27; #=GS P44039/17-166_299-333 AC P44039 #=GS P44039/17-166_299-333 OS Haemophilus influenzae Rd KW20 #=GS P44039/17-166_299-333 DE tRNA pseudouridine synthase D #=GS P44039/17-166_299-333 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus influenzae; #=GS P44039/17-166_299-333 DR EC; 5.4.99.27; #=GS Q17WX3/21-171 AC Q17WX3 #=GS Q17WX3/21-171 OS Helicobacter acinonychis str. Sheeba #=GS Q17WX3/21-171 DE tRNA pseudouridine synthase D #=GS Q17WX3/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter acinonychis; #=GS Q17WX3/21-171 DR EC; 5.4.99.27; #=GS A7H5G6/22-171 AC A7H5G6 #=GS A7H5G6/22-171 OS Campylobacter jejuni subsp. doylei 269.97 #=GS A7H5G6/22-171 DE tRNA pseudouridine synthase D #=GS A7H5G6/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; Campylobacter jejuni subsp. doylei; #=GS A7H5G6/22-171 DR EC; 5.4.99.27; #=GS Q1CSU8/21-171 AC Q1CSU8 #=GS Q1CSU8/21-171 OS Helicobacter pylori HPAG1 #=GS Q1CSU8/21-171 DE tRNA pseudouridine synthase D #=GS Q1CSU8/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS Q1CSU8/21-171 DR EC; 5.4.99.27; #=GS A0A2J9KIN1/21-171 AC A0A2J9KIN1 #=GS A0A2J9KIN1/21-171 OS Helicobacter pylori #=GS A0A2J9KIN1/21-171 DE tRNA pseudouridine synthase D #=GS A0A2J9KIN1/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A2J9KIN1/21-171 DR EC; 5.4.99.27; #=GS A0A1Y3E1W1/21-171 AC A0A1Y3E1W1 #=GS A0A1Y3E1W1/21-171 OS Helicobacter pylori SS1 #=GS A0A1Y3E1W1/21-171 DE tRNA pseudouridine synthase D #=GS A0A1Y3E1W1/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A1Y3E1W1/21-171 DR EC; 5.4.99.27; #=GS B2UU74/21-171 AC B2UU74 #=GS B2UU74/21-171 OS Helicobacter pylori Shi470 #=GS B2UU74/21-171 DE tRNA pseudouridine synthase D #=GS B2UU74/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS B2UU74/21-171 DR EC; 5.4.99.27; #=GS Q9ZKS5/21-171 AC Q9ZKS5 #=GS Q9ZKS5/21-171 OS Helicobacter pylori J99 #=GS Q9ZKS5/21-171 DE tRNA pseudouridine synthase D #=GS Q9ZKS5/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS Q9ZKS5/21-171 DR EC; 5.4.99.27; #=GS A0A1W0VLR4/21-171 AC A0A1W0VLR4 #=GS A0A1W0VLR4/21-171 OS Helicobacter pylori #=GS A0A1W0VLR4/21-171 DE tRNA pseudouridine synthase D #=GS A0A1W0VLR4/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS A0A1W0VLR4/21-171 DR EC; 5.4.99.27; #=GS B5Z7T0/21-171 AC B5Z7T0 #=GS B5Z7T0/21-171 OS Helicobacter pylori G27 #=GS B5Z7T0/21-171 DE tRNA pseudouridine synthase D #=GS B5Z7T0/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS B5Z7T0/21-171 DR EC; 5.4.99.27; #=GS B6JME7/21-171 AC B6JME7 #=GS B6JME7/21-171 OS Helicobacter pylori P12 #=GS B6JME7/21-171 DE tRNA pseudouridine synthase D #=GS B6JME7/21-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; #=GS B6JME7/21-171 DR EC; 5.4.99.27; #=GS A8FNC4/22-171 AC A8FNC4 #=GS A8FNC4/22-171 OS Campylobacter jejuni subsp. jejuni 81116 #=GS A8FNC4/22-171 DE tRNA pseudouridine synthase D #=GS A8FNC4/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; Campylobacter jejuni subsp. jejuni; #=GS A8FNC4/22-171 DR EC; 5.4.99.27; #=GS A0A400F058/22-171 AC A0A400F058 #=GS A0A400F058/22-171 OS Campylobacter jejuni #=GS A0A400F058/22-171 DE tRNA pseudouridine synthase D #=GS A0A400F058/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; #=GS A0A400F058/22-171 DR EC; 5.4.99.27; #=GS A0A2U0QQV5/22-171 AC A0A2U0QQV5 #=GS A0A2U0QQV5/22-171 OS Campylobacter jejuni #=GS A0A2U0QQV5/22-171 DE tRNA pseudouridine synthase D #=GS A0A2U0QQV5/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; #=GS A0A2U0QQV5/22-171 DR EC; 5.4.99.27; #=GS A0A0B6V5Z9/22-171 AC A0A0B6V5Z9 #=GS A0A0B6V5Z9/22-171 OS Campylobacter jejuni subsp. jejuni #=GS A0A0B6V5Z9/22-171 DE tRNA pseudouridine synthase D #=GS A0A0B6V5Z9/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; Campylobacter jejuni subsp. jejuni; #=GS A0A0B6V5Z9/22-171 DR EC; 5.4.99.27; #=GS A1W165/22-171 AC A1W165 #=GS A1W165/22-171 OS Campylobacter jejuni subsp. jejuni 81-176 #=GS A1W165/22-171 DE tRNA pseudouridine synthase D #=GS A1W165/22-171 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; Campylobacter jejuni subsp. jejuni; #=GS A1W165/22-171 DR EC; 5.4.99.27; #=GS A5UE25/17-166_299-333 AC A5UE25 #=GS A5UE25/17-166_299-333 OS Haemophilus influenzae PittEE #=GS A5UE25/17-166_299-333 DE tRNA pseudouridine synthase D #=GS A5UE25/17-166_299-333 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus influenzae; #=GS A5UE25/17-166_299-333 DR EC; 5.4.99.27; #=GS Q4QML9/17-166_299-333 AC Q4QML9 #=GS Q4QML9/17-166_299-333 OS Haemophilus influenzae 86-028NP #=GS Q4QML9/17-166_299-333 DE tRNA pseudouridine synthase D #=GS Q4QML9/17-166_299-333 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus influenzae; #=GS Q4QML9/17-166_299-333 DR EC; 5.4.99.27; #=GF SQ 22 O67616/1-184 MDIRIKEKPEEFYVKEIKKLDLKEKGQYAYFLLKKKDMTTLDAVRHISHRFGIPLKNIGFAGLKDKKAVTEQYISVKDLNEEKIRK-MDGYRTENLELKFLGFSDKGLELGEIEGNYFEVVVRGVTKYHRRVFPRMKELVENYGCENYFGEQRFGSVKHAEEFIVKYL---LRHEYEEAMKEYLTSL---G Q5HSX3/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGFKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILETFIHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTNYFGYQRFG------------------------------------ P55985/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFG------------------------------------ Q9PMK3/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFANYFGYQRFG------------------------------------ P44039/17-166_299-333 -TALLKAECADFIVKEHLGYEMSGDGEFVALYVRKTDCNTLFVGEKLAKFAGVSERNMGYAGLKDRRAVTEQWFCL--QMPGMETPDFSQFELDGVEILTVTRHNRKIRTGSLEGNYFDILLRGAEESDELKAR--LDFVANFGFPNYFTEQRFGLMK-AKGFSWAFEPEGLRLKFYLPAGSYATALVREL Q17WX3/21-171 ----FNSSARDFCVHEVPLYEFSNKGEHAIIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFVSLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAHKTKQVLEQIVQFGMPNYFGSQRFG------------------------------------ A7H5G6/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLSTNEALKILSEQSGVKMRDFGYAGLKDKQGSTFQYLSIPKKFESFL----SNFSHSKLKILETFTHENKLRIGHLKGNSFFIRLKKVMPSDALKLEQVLMNLDKQGFANYFGYQRFG------------------------------------ Q1CSU8/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVRIAELGYAGLKDKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGSQRFG------------------------------------ A0A2J9KIN1/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFG------------------------------------ A0A1Y3E1W1/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFG------------------------------------ B2UU74/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIARFGMPNYFGPQRFG------------------------------------ Q9ZKS5/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIAQFGMPNYFGSQRFG------------------------------------ A0A1W0VLR4/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIAQFGMPNYFGSQRFG------------------------------------ B5Z7T0/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLHIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKVLSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFG------------------------------------ B6JME7/21-171 ----FNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIARFGMPNYFGSQRFG------------------------------------ A8FNC4/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILEIFTHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFANYFGYQRFG------------------------------------ A0A400F058/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGFKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILETFIHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTNYFGYQRFG------------------------------------ A0A2U0QQV5/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFANYFGYQRFG------------------------------------ A0A0B6V5Z9/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFANYFGYQRFG------------------------------------ A1W165/22-171 -NAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILEIFTHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQGFTNYFGYQRFG------------------------------------ A5UE25/17-166_299-333 -TALLKAECADFIVKEHLGYEMSGDGEFVALYVRKTDCNTLFVGEKLAKFAGVSERNMGYAGLKDRRAVTEQWFCL--QMPGMETPDFSQFELDGVEILTVTRHNRKIRTGSLEGNYFDILLRGAEESDELKVR--LDFVANFGFPNYFTEQRFGLMK-AKGFSWAFELEGLRLKFYLPAGSYATALVREL Q4QML9/17-166_299-333 -TALLKAECADFIVKEHLGYEMSGDGEFVALYVRKTDCNTLFVGEKLAKFAGVSERNMGYAGLKDRRAVTEQWFCL--QMPGMETPDFSQFELDGVEILTVTRHNRKIRTGSLEGNYFDILLRGAEESDELKVR--LDFVANFGFPNYFTEQRFGLMK-AKGFSWAFEPEGLRLKFYLPAGSYATALVREL #=GC scorecons 02216444448949593557867549865565659465595555556753498555559899899746493955764464444522227674335767745337467665958699394656765454654744437435454955999639999000000000000000000000000000000000000 #=GC scorecons_70 ____*_____**_*_*___**_*__***____*_*_*__*_______*___**_____********_*_*_*__**____________*_*____****____*__***_*_****_*_*__*________*____*______*__****_****____________________________________ #=GC scorecons_80 __________**_*_*___**_*__**_______*____*___________**_____********___*_*__________________*____*_**____*__*___*_*_**_*____*________*____*______*__***__****____________________________________ #=GC scorecons_90 __________**_*_*____*____**_______*____*___________**_____*******____*_*______________________________________*_*_**_*_________________________*__***__****____________________________________ //