# STOCKHOLM 1.0 #=GF ID 3.30.2350.20/FF/000023 #=GF DE Probable tRNA pseudouridine synthase D #=GF AC 3.30.2350.20/FF/000023 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 88.992 #=GS 1z2zB01/9-32_130-175_267-435 AC Q8Q0M2 #=GS 1z2zB01/9-32_130-175_267-435 OS Methanosarcina mazei Go1 #=GS 1z2zB01/9-32_130-175_267-435 DE Probable tRNA pseudouridine synthase D #=GS 1z2zB01/9-32_130-175_267-435 DR CATH; 1z2z; B:9-32; B:130-175; B:267-435; #=GS 1z2zB01/9-32_130-175_267-435 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS Q58759/130-170_264-409 AC Q58759 #=GS Q58759/130-170_264-409 OS Methanocaldococcus jannaschii DSM 2661 #=GS Q58759/130-170_264-409 DE Probable tRNA pseudouridine synthase D 2 #=GS Q58759/130-170_264-409 DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; #=GS Q58759/130-170_264-409 DR EC; 5.4.99.27; #=GS Q8ZTR2/138-177_267-401 AC Q8ZTR2 #=GS Q8ZTR2/138-177_267-401 OS Pyrobaculum aerophilum str. IM2 #=GS Q8ZTR2/138-177_267-401 DE Probable tRNA pseudouridine synthase D #=GS Q8ZTR2/138-177_267-401 DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; #=GS Q8ZTR2/138-177_267-401 DR EC; 5.4.99.27; #=GS B0R2Y4/135-179_270-425 AC B0R2Y4 #=GS B0R2Y4/135-179_270-425 OS Halobacterium salinarum R1 #=GS B0R2Y4/135-179_270-425 DE Probable tRNA pseudouridine synthase D #=GS B0R2Y4/135-179_270-425 DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; #=GS B0R2Y4/135-179_270-425 DR EC; 5.4.99.27; #=GS Q8TKX2/133-178_270-431 AC Q8TKX2 #=GS Q8TKX2/133-178_270-431 OS Methanosarcina acetivorans C2A #=GS Q8TKX2/133-178_270-431 DE Probable tRNA pseudouridine synthase D #=GS Q8TKX2/133-178_270-431 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; #=GS Q8TKX2/133-178_270-431 DR EC; 5.4.99.27; #=GS Q5JDB6/126-168_257-411 AC Q5JDB6 #=GS Q5JDB6/126-168_257-411 OS Thermococcus kodakarensis KOD1 #=GS Q5JDB6/126-168_257-411 DE Probable tRNA pseudouridine synthase D #=GS Q5JDB6/126-168_257-411 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS Q5JDB6/126-168_257-411 DR EC; 5.4.99.27; #=GS P60347/126-167_257-399 AC P60347 #=GS P60347/126-167_257-399 OS Geobacter sulfurreducens PCA #=GS P60347/126-167_257-399 DE tRNA pseudouridine synthase D #=GS P60347/126-167_257-399 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; #=GS P60347/126-167_257-399 DR EC; 5.4.99.27; #=GS B5YJH5/107-148_240-384 AC B5YJH5 #=GS B5YJH5/107-148_240-384 OS Thermodesulfovibrio yellowstonii DSM 11347 #=GS B5YJH5/107-148_240-384 DE tRNA pseudouridine synthase D #=GS B5YJH5/107-148_240-384 DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio yellowstonii; #=GS 1z2zA01/9-32_130-175_267-435 AC Q8Q0M2 #=GS 1z2zA01/9-32_130-175_267-435 OS Methanosarcina mazei Go1 #=GS 1z2zA01/9-32_130-175_267-435 DE Probable tRNA pseudouridine synthase D #=GS 1z2zA01/9-32_130-175_267-435 DR CATH; 1z2z; A:9-32; A:130-175; A:267-435; #=GS 1z2zA01/9-32_130-175_267-435 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina mazei; #=GS Q9HSG5/135-179_270-425 AC Q9HSG5 #=GS Q9HSG5/135-179_270-425 OS Halobacterium salinarum NRC-1 #=GS Q9HSG5/135-179_270-425 DE Probable tRNA pseudouridine synthase D #=GS Q9HSG5/135-179_270-425 DR ORG; Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; #=GS Q9HSG5/135-179_270-425 DR EC; 5.4.99.27; #=GS A0A0D5N8S6/126-167_257-399 AC A0A0D5N8S6 #=GS A0A0D5N8S6/126-167_257-399 OS Geobacter sulfurreducens #=GS A0A0D5N8S6/126-167_257-399 DE tRNA pseudouridine synthase D #=GS A0A0D5N8S6/126-167_257-399 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; #=GS A0A0D5N8S6/126-167_257-399 DR EC; 5.4.99.27; #=GF SQ 11 1z2zB01/9-32_130-175_267-435 QIGINLYSTDTTGLGGQLRQEIEDLWGNDFRITVRNI-ENSPEETEALLKKTTDEILAQGGVPNFFGIQRFRXFVHGYQSYIYNIILCRRIEAGIP-----LNRAVEGDIVCFRNE-----VGLPDSSKTEKVTSETVNAXNRLLKLGRAFITAPLPGYNTEFASGIPGEIENGVLKELGVSLEGF-NIEKFPEXSSKGTRREVLLEV-KPKF----EAGEDELNPGKSKAVLEFXLPKGSYATTVLREYXKVNPL Q58759/130-170_264-409 ------------------------LEGNRFTITVRGLKKEDIPKIKENLKYL------EFGAPNYFDSQRFKIFVAAYQSYLWNECVKELLRKYVPEEDRVYYEYECGTLMFYK-----------------KMDEEVFNILKD--------KKFPTIAPDIEY-SGEEKEIIEEILKREGLTMEEL-NNIGELGKFIYS-ERKILS---IPKNLKIGEFEEDELNKGKYKITLSYELEKGSYATIIIK-------- Q8ZTR2/138-177_267-401 ------------------------IYGNRFTIILRDV--ERISCAEGALEAL-----KKTAAPNYYGYQRFRVYIEAAQSYIFNRFLSIRMEIG-P-----IDRPVEGDLV--------------------EINRQ----IAYYAEGLGGEVVLPVVGAGVRMPRGKVGEALLRVLREEGLDPSAFLKMPR--GLRVYGTYRRVRL---EPAGFEY-KIMGNDV-------FMQFTLPRGSYATVLLRE------- B0R2Y4/135-179_270-425 ------------------------LAGNAFEIVVRD--PDAPERAAAVADELAAFGGGTVGTPNYFGQQRFQLFVHAAQSYVFNRIVSERMARGLP-----FGEPVAGDVVWFADSDADAAVAQPDAARQQRVTDSRVDVMARHCERGRAFVTAPLVGTDTEFADGDPGEITRGVLDDLGLSRADF-DLPG--EFDSAGSRRAILL---RPDL----TVSHDPL-------AFEFALPSGSYATVVLRE------- Q8TKX2/133-178_270-431 ------------------------LWGNEFIITIRDI-SSSPEETRTILEKTNSKVLTQGGVPNFFGVQRFRMFVHAYQSYIYNMILCRRIESGIS-----LNRAVEGDIVCFRNE-----AGLPDSSKTEKVTSETVNAMNRLIKHGRAFITAPLPGFNTEFASGVPGEIESKILKELRVSLEGF-NVEEFPEMSSKGTRREVLLQV-EPKF----EVGEDELNPGKSKTVLEFMLPKGSYATTVLRE------- Q5JDB6/126-168_257-411 ------------------------LLGNRFRIIVRDVSEDAFDRTKEIVRELR----EKGGFPNYFGYQRFRIFIHAYQSYLFNLYLSRRIEEGLP-----LNEPLVGDIV------VQVKGGIPYRDRTYRVTETNLEFVREKVRKNQAMVSGPLFGFAMRRAKGLPGELEKEILEEEGLSLETFRRLPK--PMAEPGGRRELLL---RPMGMAYGYIQEEGM-------CFRFFLPKGTYATSVLRE------- P60347/126-167_257-399 ------------------------LAGNRFRLRLRETVPDAADRARAILDVL-----ARRGVPNRFGEQRYKLYLSACQSALFDRVLETRLQT--------IDHVMEGDLAWKHDNGA-----------CFLVTDAKAE--APRAERFEISPTGPLFGCRMTSPEGEPAALEKSILDAAGLTPAAF-NLAG--GLRMEGERRPLRVPLEGPEL----SCEEEDL-------VLRFSLPRGSYATAVLRE------- B5YJH5/107-148_240-384 ------------------------IENNVFKVTVRAISPNAIDSIIYHIEKV-----KNYGFINYFDDQRF-MFFSAYQSFIWNETVKRLLKTLFPVENLLIHKGVAGEYIFFD-----------------EIDEKNFEYLKS--------LEIPTPSSNAKMPQDIIEKIYNEIFFERQIKPSQF-NLKKIRQSFFKSVPRQVLV---IPNILH--KIEDDEVYEGKIKLTLGFILPRGSYATMLIK-------- 1z2zA01/9-32_130-175_267-435 QIGINLYSTDTTGLGGQLRQEIEDLWGNDFRITVRNI-ENSPEETEALLKKTTDEILAQGGVPNFFGIQRFRXFVHGYQSYIYNIILCRRIEAGIP-----LNRAVEGDIVCFRNE-----VGLPDSSKTEKVTSETVNAXNRLLKLGRAFITAPLPGYNTEFASGIPGEIENGVLKELGVSLEGF-NIEKFPEXSSKGTRREVLLEV-KPKF----EAGEDELNPGKSKAVLEFXLPKGSYATTVLREYXKVNPL Q9HSG5/135-179_270-425 ------------------------LAGNAFEIVVRD--PDAPERAAAVADELAAFGGGTVGTPNYFGQQRFQLFVHAAQSYVFNRIVSERMARGLP-----FGEPVAGDVVWFADSDADAAVAQPDAARQQRVTDSRVDVMARHCERGRAFVTAPLVGTDTEFADGDPGEITRGVLDDLGLSRADF-DLPG--EFDSAGSRRAILL---RPDL----TVSHDPL-------AFEFALPSGSYATVVLRE------- A0A0D5N8S6/126-167_257-399 ------------------------LAGNRFRLRLRETVPDAADRARAILDVL-----ARRGVPNRFGEQRYKLYLSACQSALFDRVLETRLQT--------IDHVMEGDLAWKHDNGA-----------CFLVTDAKAE--APRAERFEISPTGPLFGCRMTSPEGEPAALEKSILDAAGLTPAAF-NLAG--GLRMEGERRPLRVPLEGPEL----SCEEEDL-------VLRFSLPRGSYATAVLRE------- #=GC scorecons 0000000000000000000000007279394646943035445453435535000003427479587299843754749955573463465433250000044435496552322101000110211111146543234124322322332443953634443437355553347735366444370553400422337359355500039330000333565610110104648197598999467750000000 #=GC scorecons_70 ________________________*_**_*_*_**_________________________*_**_**_***__*__*_**___*__*____________________**_______________________*_____________________*__*_______*________**___**____*____________*__*________*__________*_*________*_*_**_*****_***________ #=GC scorecons_80 ________________________*_**_*____*_________________________*_**_*__***__*__*_**___*_______________________*______________________________________________*__________*_________*_________*_______________*________*_______________________*_**_*****__**________ #=GC scorecons_90 ___________________________*_*____*____________________________*_*__**________**___________________________*______________________________________________*______________________________________________*________*_______________________*_*__*_***____________ //