# STOCKHOLM 1.0
#=GF ID 3.30.2350.20/FF/000017
#=GF DE Putative pseudouridine synthase B0024.11
#=GF AC 3.30.2350.20/FF/000017
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 83.713
#=GS Q38A69/178-374           AC Q38A69
#=GS Q38A69/178-374           OS Trypanosoma brucei brucei TREU927
#=GS Q38A69/178-374           DE Uncharacterized protein
#=GS Q38A69/178-374           DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q38A69/178-374           DR GO; GO:0005634; 
#=GS Q17426/8-36_142-305      AC Q17426
#=GS Q17426/8-36_142-305      OS Caenorhabditis elegans
#=GS Q17426/8-36_142-305      DE Putative pseudouridine synthase B0024.11
#=GS Q17426/8-36_142-305      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q4Q0I6/182-383           AC Q4Q0I6
#=GS Q4Q0I6/182-383           OS Leishmania major
#=GS Q4Q0I6/182-383           DE Uncharacterized protein
#=GS Q4Q0I6/182-383           DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS H3DVP4/107-298           AC H3DVP4
#=GS H3DVP4/107-298           OS Pristionchus pacificus
#=GS H3DVP4/107-298           DE Uncharacterized protein
#=GS H3DVP4/107-298           DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A4IDY9/182-383           AC A4IDY9
#=GS A4IDY9/182-383           OS Leishmania infantum
#=GS A4IDY9/182-383           DE tRNA_pseudouridine_synthase_TruD_-_putative
#=GS A4IDY9/182-383           DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum; 
#=GS E9AU09/182-383           AC E9AU09
#=GS E9AU09/182-383           OS Leishmania mexicana MHOM/GT/2001/U1103
#=GS E9AU09/182-383           DE Uncharacterized protein
#=GS E9AU09/182-383           DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania mexicana species complex; Leishmania mexicana; 
#=GS A0A3Q8IJ87/182-383       AC A0A3Q8IJ87
#=GS A0A3Q8IJ87/182-383       OS Leishmania donovani
#=GS A0A3Q8IJ87/182-383       DE tRNA pseudouridine synthase TruD, putative
#=GS A0A3Q8IJ87/182-383       DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GS A0A2G5TIT9/8-36_140-303  AC A0A2G5TIT9
#=GS A0A2G5TIT9/8-36_140-303  OS Caenorhabditis nigoni
#=GS A0A2G5TIT9/8-36_140-303  DE Uncharacterized protein
#=GS A0A2G5TIT9/8-36_140-303  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS B6IHF5/8-36_140-303      AC B6IHF5
#=GS B6IHF5/8-36_140-303      OS Caenorhabditis briggsae
#=GS B6IHF5/8-36_140-303      DE Protein CBG27079
#=GS B6IHF5/8-36_140-303      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2A6BXC1/107-301       AC A0A2A6BXC1
#=GS A0A2A6BXC1/107-301       OS Pristionchus pacificus
#=GS A0A2A6BXC1/107-301       DE Uncharacterized protein
#=GS A0A2A6BXC1/107-301       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS E9BUV7/182-383           AC E9BUV7
#=GS E9BUV7/182-383           OS Leishmania donovani BPK282A1
#=GS E9BUV7/182-383           DE Uncharacterized protein
#=GS E9BUV7/182-383           DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GF SQ 11
Q38A69/178-374                   ------------------LLGGRYISRAESGTLVIERATHATRRADERRLNPVRSQ-KFLHFTLYKENIDSNHALREVASYLHVPTRSLLFSGTKDKRAVTLQRVAVRGVSPEKLIGINSRSFGQDRKVKVCSFRTMDHGLRLGDAVGNHFLIALRLLPESRD-----------IDSDTLNTVESTINREGVVNYFGTQRFGTTDVLTGDVGIQLLSGHFENALRLV----
Q17426/8-36_142-305              TEYASEHTITPVPCLLK-----EMYSDFIVQEIL---------------KLWDEKVPKECHFTICKENKETSFACQLIAKFLNVGPNNIRTHGIKDKRAVTSQRVSVTKVHERTILDLNSKLRG----IRVFGCEYKDDPVQMGAHWGNRFSIVLRSLPDDSE--------------QLLHQRLETFQNTGFINYFGTQRFGSRSSTTAEIGLAIVKRDWEKAVKMIMTNA
Q4Q0I6/182-383                   ----------------------THVSNTVDGVVTVVKANAADRREERRRSRTNRPEPKYHHFTLYKENTDNNQALRMLAHHLKVSSRQLQFCGTKDKRAVTLQRVAVRGTTVERLMTINSRAFGAHNVIKVCGFTEEKHGLRLGDALGNHFRIVLRMFPAAPLAADSETSVCHALTAQDLHEVERVVQEVGVINYFGPQRFGTTCILTSDVGVQFLQGRLREGL-------
H3DVP4/107-298                   ---------TSVHGFIRSRYGGELESELVKEEIVV------KRKKPGKRKRWARDMPPYTHFTMAKENKETAYALGIVAKMSGCNQSLFKTCGLKDRRAVTAQRVSAFQ---DKLLNLNSRLRG----IVLYDMSYEREGVRTGSHWGNRFSIVLRDINPAAE--------------STLESRLSEWAELGFINYFGTQRFGSCETRTADVGRLILQRNWKEAVEMIL---
A4IDY9/182-383                   ----------------------THVSNTVDGVVTVFKANAADRREERRRSRANRPEPKYHHFTLYKENTDNNQALRMLAHHLKLSSRQLQFCGTKDKRAVTLQRVAVRETTVERLMTINSRAFGAHNVIKVCGFTEEKHGLRLGDALGNHFRIVLRMFPAAPSAAEGETSVCHALTAQDLHEVERVVQEVGVINYFGPQRFGTTSVLTSDVGVQFLQGRLREGL-------
E9AU09/182-383                   ----------------------THVSNTVDGVVTVVKANAADRREERRRSRTSRPEPRYHHFTLYKENTDSNQALRMLAHHLKLSSRQLQFCGTKDKRAVTLQRVAVRETTVERLKTINSRTFGAHNVIKVCSFTEEKHGLRLGDALGNQFRIALRMFSAAPSAAESETSVCHVLTAQDLHEVERVVQEVGVINYFGPQRFGTTSILTSDVGIQFLQGRLREGL-------
A0A3Q8IJ87/182-383               ----------------------THVSNTVDGVVTVFKANAADRREERRRSRANRPEPKYHHFTLYKENTDNNQALRMLAHHLKLSSRQLQFCGTKDKRAVTLQRVAVRETTVERLMTINSRAFGAHNVIKVCGFTEEKHGLRLGDALGNHFRIVLRMFPAAPSAAEGETSVCHALTAQDLHEVERVVQEVGVINYFGPQRFGTTSVLTSDVGVQFLQGRLREGL-------
A0A2G5TIT9/8-36_140-303          TEYASGHEITPIPCLLK-----EMYTDFIVQEIL---------------KNWDENIPKECHFTMCKENKETSYACQLIAKFLNIGPNNIKTHGIKDKRGVTAQRVSVTKVLESKILDLNSRLRG----IKVFGCEYKNEPVKMGGHWGNRFSIVLRDLPNDSE--------------PTLHERLETFQNTGFLNYFGTQRFGSRCSTTAEIGLAIAKRDWEGAVRMILSNA
B6IHF5/8-36_140-303              TEYASGHEITPIPCLLK-----EMYTDFIVQEIL---------------KNWDENIPKECHFTMCKENKETSYACQLIAKFLNIGPNNIKTHGIKDKRGVTAQRVSVTKVLESKILDLNSRLRG----IKVFGCEYKNEPVKMGGHWGNRFSIVLRDLPNDSE--------------PTLHERLETFQNTGFLNYFGTQRFGSRCSTTAEIGLAIAKRDWEGAVRMILSNA
A0A2A6BXC1/107-301               ---------TSVHGFIRSRYGGELESELVKEEIVV------KRKKPGKRKRWARDMPPYTHFTMAKENKETAYALGIVAKMSGCNQSLFKTCGLKDRRAVTAQRVSAFQVDIDKLLNLNSRLRG----IVLYDMSYEREGVRTGSHWGNRFSIVLRDINPAAE--------------STLESRLSEWAELGFINYFGTQRFGSCETRTADVGRLILQRNWKEAVEMIL---
E9BUV7/182-383                   ----------------------THVSNTVDGVVTVFKANAADRREERRRSRANRPEPKYHHFTLYKENTDNNQALRMLAHHLKLSSRQLQFCGTKDKRAVTLQRVAVRETTVERLMTINSRAFGAHNVIKVCGFTEEKHGLRLGDALGNHFRIVLRMFPAAPSAAEGETSVCHALTAQDLHEVERVVQEVGVINYFGPQRFGTTSVLTSDVGVQFLQGRLREGL-------
#=GC scorecons                   000000000211111110000044375463446430111112432223444346337543999649994755495545954644444355559599797994999673442346654699844911118575544354556659454996949799355454411001111110111449644444355495699996999964444957794455554455661221000
#=GC scorecons_70                _________________________*______*_______________________*___***__***_*___*____*__*__________*_*******_***_*_______*__****__*____*_*_________**_*___**_*_****_______________________*__________*_*****_****_____*_***___________*_______
#=GC scorecons_80                ____________________________________________________________***__***_____*____*_____________*_****_**_***_____________***__*____*_*____________*___**_*_****_______________________*__________*__****_****_____*_***___________________
#=GC scorecons_90                ____________________________________________________________***__***_____*____*_____________*_**_*_**_***_____________***__*____*______________*___**_*_*_**_______________________*__________*__****_****_____*___*___________________
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