# STOCKHOLM 1.0
#=GF ID 3.30.2350.10/FF/000036
#=GF DE Pseudouridine synthase
#=GF AC 3.30.2350.10/FF/000036
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 75.599
#=GS F4KBV6/132-378      AC F4KBV6
#=GS F4KBV6/132-378      OS Arabidopsis thaliana
#=GS F4KBV6/132-378      DE Pseudouridine synthase
#=GS F4KBV6/132-378      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4KBV6/132-378      DR GO; GO:0005829; GO:0009982; 
#=GS Q9LU60/132-378      AC Q9LU60
#=GS Q9LU60/132-378      OS Arabidopsis thaliana
#=GS Q9LU60/132-378      DE RNA pseudouridine synthase 7
#=GS Q9LU60/132-378      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178UGD1/132-378  AC A0A178UGD1
#=GS A0A178UGD1/132-378  OS Arabidopsis thaliana
#=GS A0A178UGD1/132-378  DE Pseudouridine synthase
#=GS A0A178UGD1/132-378  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A9S620/82-331       AC A9S620
#=GS A9S620/82-331       OS Physcomitrella patens
#=GS A9S620/82-331       DE Pseudouridine synthase
#=GS A9S620/82-331       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS Q54UF9/233-473      AC Q54UF9
#=GS Q54UF9/233-473      OS Dictyostelium discoideum
#=GS Q54UF9/233-473      DE Uncharacterized protein
#=GS Q54UF9/233-473      DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; 
#=GS A9UX27/103-378      AC A9UX27
#=GS A9UX27/103-378      OS Monosiga brevicollis
#=GS A9UX27/103-378      DE Pseudouridine synthase
#=GS A9UX27/103-378      DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GS R0GA74/135-382      AC R0GA74
#=GS R0GA74/135-382      OS Capsella rubella
#=GS R0GA74/135-382      DE Pseudouridine synthase
#=GS R0GA74/135-382      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7MQX8/129-376      AC D7MQX8
#=GS D7MQX8/129-376      OS Arabidopsis lyrata subsp. lyrata
#=GS D7MQX8/129-376      DE Pseudouridine synthase
#=GS D7MQX8/129-376      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GF SQ 8
F4KBV6/132-378              -----MIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIVDANINYNGSEG------------RSTAEDANS--SGDDKKVKGKPACTKFTRIDTNG--THSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQHID-----NLETYIAKRIDAGERKIVSPDD------------YVY--------------SSEDFSIDPMCTNCPKLIPQGYEEHDEALWLHCVQY-------
Q9LU60/132-378              -----MIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIVDANINYNGSEG------------RSTAEDANS--SGDDKKVKGKPACTKFTRIDTNG--THSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQHID-----NLETYIAKRIDAGERKIVSPDD------------YVY--------------SSEDFSIDPMCTNCPKLIPQGYEEHDEALWLHCVQY-------
A0A178UGD1/132-378          -----MIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIVDANINYNGSEG------------RSTAEDANS--SGDDKKVKGKPACTKFTRIDTNG--THSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQHID-----NLETYIAKRIDAGERKIVSPDD------------YVY--------------SSEDFSIDPMCTNCPKLIPQGYEEHDEALWLHCVQY-------
A9S620/82-331               ------AGRVIVLEEGPDIIVVSKPATVPVHPCGQYRKNSVISILEAEHKTGPLFPVHRLDRLVSGLLILARNSRTADFFRQEIEAGVVQKQYVAKVKGVFPAEEVELNAAVIYDPREG------------RSSVEVQNNLEVTPESDAKSKESCTKFRRLSTDG--VDSIVQCMPLTGRTHQIRVHLQYLGFPIANDDLYLHSNVTKRSKANTTADRAAKIPEERSQFVSKS------------------------------INPNFMVDPLCTHCPNMAPTGYTGDDEGLWLHCIRYS------
Q54UF9/233-473              --PPVTGESIKIVSLDENVVVVDKPSSIPVHPCGRFRHNSLMYILASEHGINQLYGVHRLDRLTSGLLLLARTPDSANKKANQIQSGLVSKQYLAKVIGKFPGSDTINSSSSSFNEQIKLCKHLEDGTFIIDQPIVIQSMRLGINHVGVGGKPSITHIKLFSYDQSTNTSIVLCTPKTGRTHQIRVHLKWLGFPIANDPLYNNEF--------KESFKALTSDGKTSYIFDDDDGGGEN----------------------------------------------NEKDEKI---------NNNNN
A9UX27/103-378              HEPPVTNDPLSIVGETPDLLAIDKPASIPVHPCGRYRHNTVQAILGHEHDRWRVYPCHRLDRLTSGLLIFCKNPAMAKQFEQWITQHQVEKQYICRVQGRVEQSVLFCDA-----------------------PLKICDQRLGLCCVHPEGKASLTRFRVIRRDK--DTTVLHCFPKTGRMHQIRVHVQYLGHPIVNDPVYNSELWGP----ERGRGGALTRSSKIRILARVYRVSGTSVMSLVAGSIHPISPRLRMRMLSELVPAHAGLTP-CERSWQIDRQDPAPEAMRIYLHAFRYRGPTFDF
R0GA74/135-382              -----MIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTVVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGLVKKRYIAKVIGVFPEDEMVVDANINYNGSEG------------RSTAEDAIS--SGDDKKVKGKPACTKFTRIATNG--THSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQQID-----NLETYIAKRIDAGERKIVSPDD------------YVY--------------STEDFSIDPMCTNCPKLIPQGYEEHDEALWLHCVQYS------
D7MQX8/129-376              -----MIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTVVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGGMVKKRYIAKVIGVFPEDEMIVDANINYNGSEG------------RSTAEDPDS--SGDDKKVKGKPACTKLTRIDTNG--THSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQHID-----NLETYIAKRIDAGEKKIVSPDD------------YVY--------------SSEDFSIDPMCTNCPKLIPQGYEEHDEALWLHCVQYS------
#=GC scorecons              000003363637634467664739967699999967959654399449953437764999999599997567654395354649436394969667949466444443562224422330000000000003354433431143333354795549564353464003465739293999699999977659599699679454322000003354339344444343544344000000000000122000000000000002222323352532323323333444654635533351000000
#=GC scorecons_70           ___________*_____*___*_***********_**_*____**__**____***_******_*****_**____*____*_*____*_*_*_***_*_*________*________________________________________**___*_____________*_*_*_*_*************_*_********_________________*_____________________________________________________________________*_________________
#=GC scorecons_80           ___________*_________*_**_*_******_**_*____**__**_____*__******_****___*____*______*____*_*_*__**_*___________________________________________________**___*_________________*_*_***_******____*_**_**__*_________________*_______________________________________________________________________________________
#=GC scorecons_90           _______________________**___******__*_*____**__**________******_****________*______*____*_*_*___*_*____________________________________________________*___*_________________*_*_***_******____*_**_**__*_________________*_______________________________________________________________________________________
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