# STOCKHOLM 1.0
#=GF ID 3.30.2350.10/FF/000022
#=GF DE RNA pseudouridine synthase
#=GF AC 3.30.2350.10/FF/000022
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 14.455
#=GS Q2FX95/67-272      AC Q2FX95
#=GS Q2FX95/67-272      OS Staphylococcus aureus subsp. aureus NCTC 8325
#=GS Q2FX95/67-272      DE Ribosomal large subunit pseudouridine synthase, RluD subfamily, putative
#=GS Q2FX95/67-272      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A0H3JLK1/67-272  AC A0A0H3JLK1
#=GS A0A0H3JLK1/67-272  OS Staphylococcus aureus subsp. aureus N315
#=GS A0A0H3JLK1/67-272  DE Uncharacterized protein
#=GS A0A0H3JLK1/67-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A1N3X076/68-272  AC A0A1N3X076
#=GS A0A1N3X076/68-272  OS Mycobacteroides abscessus subsp. abscessus
#=GS A0A1N3X076/68-272  DE Pseudouridine synthase
#=GS A0A1N3X076/68-272  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides abscessus; Mycobacteroides abscessus subsp. abscessus; 
#=GS A0A431ZLS1/68-272  AC A0A431ZLS1
#=GS A0A431ZLS1/68-272  OS Staphylococcus carnosus subsp. carnosus
#=GS A0A431ZLS1/68-272  DE Pseudouridine synthase
#=GS A0A431ZLS1/68-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus carnosus; Staphylococcus carnosus subsp. carnosus; 
#=GS A0A1E8XDB4/67-272  AC A0A1E8XDB4
#=GS A0A1E8XDB4/67-272  OS Staphylococcus sp. HMSC055H04
#=GS A0A1E8XDB4/67-272  DE RNA pseudouridine synthase
#=GS A0A1E8XDB4/67-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus sp. HMSC055H04; 
#=GS A0A3S7GXJ3/68-272  AC A0A3S7GXJ3
#=GS A0A3S7GXJ3/68-272  OS Staphylococcus hominis
#=GS A0A3S7GXJ3/68-272  DE Pseudouridine synthase
#=GS A0A3S7GXJ3/68-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus hominis; 
#=GS A0A380G0T6/68-272  AC A0A380G0T6
#=GS A0A380G0T6/68-272  OS Staphylococcus petrasii subsp. jettensis
#=GS A0A380G0T6/68-272  DE Pseudouridine synthase
#=GS A0A380G0T6/68-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus petrasii; Staphylococcus petrasii subsp. jettensis; 
#=GS A0A380CFT0/68-272  AC A0A380CFT0
#=GS A0A380CFT0/68-272  OS Staphylococcus argenteus
#=GS A0A380CFT0/68-272  DE Pseudouridine synthase
#=GS A0A380CFT0/68-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus argenteus; 
#=GS W8UWM8/67-272      AC W8UWM8
#=GS W8UWM8/67-272      OS Staphylococcus aureus
#=GS W8UWM8/67-272      DE Pseudouridine synthase
#=GS W8UWM8/67-272      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; 
#=GS A0A0H3K016/67-272  AC A0A0H3K016
#=GS A0A0H3K016/67-272  OS Staphylococcus aureus subsp. aureus Mu50
#=GS A0A0H3K016/67-272  DE Uncharacterized protein
#=GS A0A0H3K016/67-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A0H3K3R0/67-272  AC A0A0H3K3R0
#=GS A0A0H3K3R0/67-272  OS Staphylococcus aureus subsp. aureus MW2
#=GS A0A0H3K3R0/67-272  DE Uncharacterized protein
#=GS A0A0H3K3R0/67-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A0H2WWF6/67-272  AC A0A0H2WWF6
#=GS A0A0H2WWF6/67-272  OS Staphylococcus aureus subsp. aureus COL
#=GS A0A0H2WWF6/67-272  DE Ribosomal large subunit pseudouridine synthase, RluD subfamily
#=GS A0A0H2WWF6/67-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A0H3K905/67-272  AC A0A0H3K905
#=GS A0A0H3K905/67-272  OS Staphylococcus aureus subsp. aureus str. Newman
#=GS A0A0H3K905/67-272  DE RNA pseudouridylate synthase
#=GS A0A0H3K905/67-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS T1Y9K2/67-272      AC T1Y9K2
#=GS T1Y9K2/67-272      OS Staphylococcus aureus subsp. aureus CN1
#=GS T1Y9K2/67-272      DE Ribosomal large subunit pseudouridine synthase D
#=GS T1Y9K2/67-272      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A0H2XGV5/67-272  AC A0A0H2XGV5
#=GS A0A0H2XGV5/67-272  OS Staphylococcus aureus subsp. aureus USA300
#=GS A0A0H2XGV5/67-272  DE Ribosomal large subunit pseudouridine synthase, RluD subfamily
#=GS A0A0H2XGV5/67-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; Staphylococcus aureus subsp. aureus; 
#=GS A0A0U1MQT2/68-272  AC A0A0U1MQT2
#=GS A0A0U1MQT2/68-272  OS Staphylococcus aureus
#=GS A0A0U1MQT2/68-272  DE Pseudouridine synthase
#=GS A0A0U1MQT2/68-272  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus; 
#=GF SQ 16
Q2FX95/67-272              YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A0H3JLK1/67-272          YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A1N3X076/68-272          -LPSYRYAQITYEDNDLAIVMKPKGVKTHPNDLKESNTLMNHVIYTMDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEENQITRIYRANVKALLPLKPQTIDMPIGKDKFHPNKRRISNTGQRAITHILTSKMIKEGICQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDATLRQLELNSYKIEFTHPLTQELISVSLD
A0A431ZLS1/68-272          -LPSYRYAQVSYEDDDLAIVMKPKGVKTHPNDLKESNTLMNHVIYTVDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNEITRIYKANVKALLPLKPQTIDMPIGKDKFHPNKRRISNTGQRAITHILSSEMVKEGVCQLDIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELKSYQIEFKHPLTQELISVSLD
A0A1E8XDB4/67-272          YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A3S7GXJ3/68-272          -LPSYRYAQITYEDNDLAIVMKPKGVKTHPNDLKESNTLMNHVIYTMDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEENQITRIYRANVKALLPLKPQTIDMPIGKDKFHPNKRRISNTGQRAITHILTSKMIKEGICQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDATLRQLELNSYKIEFTHPLTQELISVSLD
A0A380G0T6/68-272          -VPSYRYAQISYEDDDLAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNEITRIYKANVKALLPLKPQTIDMPIGKDKFHPNKRRISNTGQRAITHILSSEMIKEGVCQLDIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELNSYQIEFKHPLTQEVISVNLD
A0A380CFT0/68-272          -VPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTVDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEENNITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMLKENVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
W8UWM8/67-272              YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A0H3K016/67-272          YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A0H3K3R0/67-272          YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A0H2WWF6/67-272          YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A0H3K905/67-272          YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
T1Y9K2/67-272              YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A0H2XGV5/67-272          YVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
A0A0U1MQT2/68-272          -VPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTVDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEENNITRIYKANVKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMLKENVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLD
#=GC scorecons             16999999984999796999999999999999999999999999996999999999999999999999999999999999999795999997999999999999999999999999699997959999999999696979957999799999999999999999999999999999969999999599799949999696999799
#=GC scorecons_70          _*********_***********************************_**************************************_******************************_******_*****************_*******************************************_******_*************
#=GC scorecons_80          __********_***_*_*****************************_**************************************_******************************_****_*_**********_*_*_**_***********************************_*******_**_***_****_*_******
#=GC scorecons_90          __********_***_*_*****************************_************************************_*_*****_************************_****_*_**********_*_*_**__***_******************************_*******_**_***_****_*_***_**
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