# STOCKHOLM 1.0
#=GF ID 3.30.2350.10/FF/000019
#=GF DE Mitochondrial mRNA pseudouridine synthase RPUSD3
#=GF AC 3.30.2350.10/FF/000019
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 37.483
#=GS Q6P087/77-267_302-331      AC Q6P087
#=GS Q6P087/77-267_302-331      OS Homo sapiens
#=GS Q6P087/77-267_302-331      DE Mitochondrial mRNA pseudouridine synthase RPUSD3
#=GS Q6P087/77-267_302-331      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q6P087/77-267_302-331      DR GO; GO:0003723; GO:0005515; GO:0070131; 
#=GS Q14AI6/70-320              AC Q14AI6
#=GS Q14AI6/70-320              OS Mus musculus
#=GS Q14AI6/70-320              DE Mitochondrial mRNA pseudouridine synthase Rpusd3
#=GS Q14AI6/70-320              DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q14AI6/70-320              DR GO; GO:0070131; 
#=GS Q2TBK7/72-260_295-320      AC Q2TBK7
#=GS Q2TBK7/72-260_295-320      OS Bos taurus
#=GS Q2TBK7/72-260_295-320      DE Mitochondrial mRNA pseudouridine synthase RPUSD3
#=GS Q2TBK7/72-260_295-320      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS Q2TBK7/72-260_295-320      DR GO; GO:0070131; 
#=GS A0A2K5R5V7/74-264_299-329  AC A0A2K5R5V7
#=GS A0A2K5R5V7/74-264_299-329  OS Cebus capucinus imitator
#=GS A0A2K5R5V7/74-264_299-329  DE Uncharacterized protein
#=GS A0A2K5R5V7/74-264_299-329  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Cebinae; Cebus; Cebus capucinus; Cebus capucinus imitator; 
#=GS W5P7E9/79-268_303-328      AC W5P7E9
#=GS W5P7E9/79-268_303-328      OS Ovis aries
#=GS W5P7E9/79-268_303-328      DE Uncharacterized protein
#=GS W5P7E9/79-268_303-328      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS A0A0D9RDL0/77-267_302-331  AC A0A0D9RDL0
#=GS A0A0D9RDL0/77-267_302-331  OS Chlorocebus sabaeus
#=GS A0A0D9RDL0/77-267_302-331  DE Uncharacterized protein
#=GS A0A0D9RDL0/77-267_302-331  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS A0A452G5P3/60-249_284-309  AC A0A452G5P3
#=GS A0A452G5P3/60-249_284-309  OS Capra hircus
#=GS A0A452G5P3/60-249_284-309  DE Uncharacterized protein
#=GS A0A452G5P3/60-249_284-309  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Capra; Capra hircus; 
#=GS A0A2K6V7U4/74-264_299-328  AC A0A2K6V7U4
#=GS A0A2K6V7U4/74-264_299-328  OS Saimiri boliviensis boliviensis
#=GS A0A2K6V7U4/74-264_299-328  DE RNA pseudouridine synthase D3
#=GS A0A2K6V7U4/74-264_299-328  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Saimiriinae; Saimiri; Saimiri boliviensis; Saimiri boliviensis boliviensis; 
#=GS H2PA46/77-267_301-332      AC H2PA46
#=GS H2PA46/77-267_301-332      OS Pongo abelii
#=GS H2PA46/77-267_301-332      DE RPUSD3 isoform 4
#=GS H2PA46/77-267_301-332      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS A0A2K5JZ19/77-267_302-331  AC A0A2K5JZ19
#=GS A0A2K5JZ19/77-267_302-331  OS Colobus angolensis palliatus
#=GS A0A2K5JZ19/77-267_302-331  DE Uncharacterized protein
#=GS A0A2K5JZ19/77-267_302-331  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Colobus; Colobus angolensis; Colobus angolensis palliatus; 
#=GS A0A096NYM5/77-267_302-331  AC A0A096NYM5
#=GS A0A096NYM5/77-267_302-331  OS Papio anubis
#=GS A0A096NYM5/77-267_302-331  DE Uncharacterized protein
#=GS A0A096NYM5/77-267_302-331  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS A0A2K6DE63/77-267_302-331  AC A0A2K6DE63
#=GS A0A2K6DE63/77-267_302-331  OS Macaca nemestrina
#=GS A0A2K6DE63/77-267_302-331  DE Uncharacterized protein
#=GS A0A2K6DE63/77-267_302-331  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca nemestrina; 
#=GS A0A2K5MPF8/77-267_302-331  AC A0A2K5MPF8
#=GS A0A2K5MPF8/77-267_302-331  OS Cercocebus atys
#=GS A0A2K5MPF8/77-267_302-331  DE Uncharacterized protein
#=GS A0A2K5MPF8/77-267_302-331  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Cercocebus; Cercocebus atys; 
#=GS A0A2K5YVA8/77-267_302-331  AC A0A2K5YVA8
#=GS A0A2K5YVA8/77-267_302-331  OS Mandrillus leucophaeus
#=GS A0A2K5YVA8/77-267_302-331  DE Uncharacterized protein
#=GS A0A2K5YVA8/77-267_302-331  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Mandrillus; Mandrillus leucophaeus; 
#=GS G3RBE8/77-267_302-331      AC G3RBE8
#=GS G3RBE8/77-267_302-331      OS Gorilla gorilla gorilla
#=GS G3RBE8/77-267_302-331      DE RNA pseudouridine synthase D3
#=GS G3RBE8/77-267_302-331      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS A0A1D5Q4R0/46-236_271-300  AC A0A1D5Q4R0
#=GS A0A1D5Q4R0/46-236_271-300  OS Macaca mulatta
#=GS A0A1D5Q4R0/46-236_271-300  DE Uncharacterized protein
#=GS A0A1D5Q4R0/46-236_271-300  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS G8F653/77-267_302-331      AC G8F653
#=GS G8F653/77-267_302-331      OS Macaca fascicularis
#=GS G8F653/77-267_302-331      DE RNA pseudouridylate synthase domain-containing protein 3
#=GS G8F653/77-267_302-331      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS A0A2K5V1X0/77-267_302-331  AC A0A2K5V1X0
#=GS A0A2K5V1X0/77-267_302-331  OS Macaca fascicularis
#=GS A0A2K5V1X0/77-267_302-331  DE Uncharacterized protein
#=GS A0A2K5V1X0/77-267_302-331  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS F1MN91/71-260_295-320      AC F1MN91
#=GS F1MN91/71-260_295-320      OS Bos taurus
#=GS F1MN91/71-260_295-320      DE Mitochondrial mRNA pseudouridine synthase RPUSD3
#=GS F1MN91/71-260_295-320      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GF SQ 19
Q6P087/77-267_302-331              DALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHMYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPVEL--
Q14AI6/70-320                      HVLRAAVVDQKGPLVTLNKPQGLPVTGRPGELTLLSVLPQLSQALGLEHQELQVVRAPGKEASGLVLLSSCPQTASRLQKFFIHSRRAQRPTATYCAVTDGIPEPSEGTVCMPLKMEQMNDVDLAVPVMSPSRKDIQEGVKRTLSRFHVMATGRGCALVQLQPLTVFPNQLQVHMALQLCPILGDHTYAARVGTVLGQRFLWPAETTKPQRQVLDEALLRHLRLSPSQVAQMPLHLHLHRLLLPGTGSRDP------
Q2TBK7/72-260_295-320              --LRAAVVDSKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSRSLGLGEQEVQVVRASGKEASGLVLLSSCSQTASRLQKFFTHSRRARKPTATYCAVTDGIPVTSEGKIQAALKLEHIDGVNLVVPVQSPSRKDIMEGVKRTLSHFRVVATGSGCALVQLQPLTVFPSQLQAHMALQLCPVLGDHTYSAR----------------------------------ASQAARLPLHLHLHCLRLPGARPRDP------
A0A2K5R5V7/74-264_299-329          DTLRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSQSLGLGERELQVVRASGKESSGLVLLSSCPQTTSRLQKFFIHARRAQRPTATYCAVTNGIPATSEGKIQTALKLEHIDGVNLSVPVKTPSRKDILEGVKKTLSHFRVLATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIELL-
W5P7E9/79-268_303-328              -VLRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSQSLGLGEQELQVVRASGKEASGLVLLSSCPQTASRLQKFFAHSQRARRPTATYCAVTDGIPVTSEGKIQAALKLEHIDGVNLVVPVQSPSRKDIMEGVKRTLSHFRVVATGSGCALVQLQPLTVFPNQLQAHMALQLCPVLGDHTYSAR----------------------------------ASQAARLPLHLHLHCLRLPGTRPRDP------
A0A0D9RDL0/77-267_302-331          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFIHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVKITVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
A0A452G5P3/60-249_284-309          -VLRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSRSLGLGEQELQVVRASGKEASGLVLLSSCPQTASRLQKFFAHSQRARRPTATYCAVTDGIPVTSEGKIQAALKLEHIDGVNLVVPVQSPSRKDIMEGVKRTLSHFRVVATGSGCALVQLQPLTVFPNQLQAHMALQLCPVLGDHTYSAR----------------------------------ASQAARLPLHLHLHCLRLPGTRPRDP------
A0A2K6V7U4/74-264_299-328          DALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSQSLGLGEQELQVVQASGKESSGLVLLSSCPQTTSRLQKFFIHARRAQRPTATYCAVTNGIPATSEGKIQTALKLEHIDGVKLSVPVKAPSRKDILEGVKKTLSHFRVLATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
H2PA46/77-267_301-332              DALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLGKQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHMYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRASDTPIELLA
A0A2K5JZ19/77-267_302-331          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFIHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
A0A096NYM5/77-267_302-331          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
A0A2K6DE63/77-267_302-331          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILQGVKKTRSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
A0A2K5MPF8/77-267_302-331          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVIATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
A0A2K5YVA8/77-267_302-331          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
G3RBE8/77-267_302-331              DALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHMYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPVEL--
A0A1D5Q4R0/46-236_271-300          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILQGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
G8F653/77-267_302-331              DALRAAVVDRKGPLVMLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTIPVKAPSRKDILQGVKKTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
A0A2K5V1X0/77-267_302-331          DALRAAVVDRKGPLVTLNKPQGLPVTGKSGELTLLSVLPELSQSLGLGEQELQVVRASGKESSGLVLLSSCPQTASRLQKFFTHSQRAQRPTATYCAVTNGIPTASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILQGVKKTLSHFRVVATGSDCALVQLQPLTVFSSQLQVHMVLQLCPVLGDHTYSAR----------------------------------PSQAAQLPLHLHLHRLLLPGTRARDTPIEL--
F1MN91/71-260_295-320              -VLRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSRSLGLGEQEVQVVRASGKEASGLVLLSSCSQTASRLQKFFTHSRRARKPTATYCAVTDGIPVTSEGKIQAALKLEHIDGVNLVVPVQSPSRKDIMEGVKRTLSHFRVVATGSGCALVQLQPLTVFPSQLQAHMALQLCPVLGDHTYSAR----------------------------------ASQAARLPLHLHLHCLRLPGARPRDP------
#=GC scorecons                     34999999969999989999999999976999997999979977999668979998979996999999999799899999895966996899999999969994599967667997977779684899559999995799979897979699968999999999999669996996999997999979799000000000000000000000000000000000069979679999999695999775896222200
#=GC scorecons_70                  __***********************************************************_********************_********************__******_************_***__******_******************************_*******_***************__________________________________**************_*_*****_**_______
#=GC scorecons_80                  __*******_******************_******************__************_********************_*__**_**********_***__***_*__**********_*_***__******_****_*******_***_*************__***_**_***************___________________________________****_********_*_****__**_______
#=GC scorecons_90                  __*******_*****************__*****_****_**__***__**_*****_***_*********_**********_*__**__*********_***__***_____**_*____*_*_***__******__***_***_*_*_***_*************__***_**_*****_****_*_**___________________________________**_*__*******_*_***___**_______
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