# STOCKHOLM 1.0
#=GF ID 2.70.20.60/FF/000002
#=GF DE Matrix protein
#=GF AC 2.70.20.60/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 35.176
#=GS 4g1oB02/188-356     AC P11206
#=GS 4g1oB02/188-356     OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1oB02/188-356     DE Matrix protein
#=GS 4g1oB02/188-356     DR CATH; 4g1o; B:188-356; 
#=GS 4g1oB02/188-356     DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q9W7T8/192-356      AC Q9W7T8
#=GS Q9W7T8/192-356      OS Avian avulavirus 1
#=GS Q9W7T8/192-356      DE M
#=GS Q9W7T8/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q9W7T8/192-356      DR GO; GO:0044196; 
#=GS 4g1oA02/188-356     AC P11206
#=GS 4g1oA02/188-356     OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1oA02/188-356     DE Matrix protein
#=GS 4g1oA02/188-356     DR CATH; 4g1o; A:188-356; 
#=GS 4g1oA02/188-356     DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS 4g1lB02/188-364     AC P11206
#=GS 4g1lB02/188-364     OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1lB02/188-364     DE Matrix protein
#=GS 4g1lB02/188-364     DR CATH; 4g1l; B:188-362; 
#=GS 4g1lB02/188-364     DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS 4g1lA02/188-356     AC P11206
#=GS 4g1lA02/188-356     OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1lA02/188-356     DE Matrix protein
#=GS 4g1lA02/188-356     DR CATH; 4g1l; A:188-356; 
#=GS 4g1lA02/188-356     DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS 4g1gB02/188-364     AC P11206
#=GS 4g1gB02/188-364     OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1gB02/188-364     DE Matrix protein
#=GS 4g1gB02/188-364     DR CATH; 4g1g; B:188-364; 
#=GS 4g1gB02/188-364     DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS 4g1gA02/188-356     AC P11206
#=GS 4g1gA02/188-356     OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS 4g1gA02/188-356     DE Matrix protein
#=GS 4g1gA02/188-356     DR CATH; 4g1g; A:188-356; 
#=GS 4g1gA02/188-356     DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS K4MTN4/192-356      AC K4MTN4
#=GS K4MTN4/192-356      OS Avian avulavirus 1
#=GS K4MTN4/192-356      DE M protein
#=GS K4MTN4/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS K4MTN4/192-356      DR GO; GO:0044196; 
#=GS D7F443/192-356      AC D7F443
#=GS D7F443/192-356      OS Avian avulavirus 1
#=GS D7F443/192-356      DE Matrix protein
#=GS D7F443/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS D7F443/192-356      DR GO; GO:0044196; 
#=GS Q15EM2/192-356      AC Q15EM2
#=GS Q15EM2/192-356      OS Avian avulavirus 1
#=GS Q15EM2/192-356      DE Matrix protein
#=GS Q15EM2/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q15EM2/192-356      DR GO; GO:0044196; 
#=GS D7F419/191-356      AC D7F419
#=GS D7F419/191-356      OS Avian avulavirus 1
#=GS D7F419/191-356      DE Matrix protein
#=GS D7F419/191-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS D7F419/191-356      DR GO; GO:0044196; 
#=GS H2DMX1/192-356      AC H2DMX1
#=GS H2DMX1/192-356      OS Avian avulavirus 1
#=GS H2DMX1/192-356      DE Matrix protein
#=GS H2DMX1/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H2DMX1/192-356      DR GO; GO:0044196; 
#=GS P06157/192-356      AC P06157
#=GS P06157/192-356      OS Newcastle disease virus strain Beaudette C/45
#=GS P06157/192-356      DE Matrix protein
#=GS P06157/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H6VTA3/192-356      AC H6VTA3
#=GS H6VTA3/192-356      OS Avian avulavirus 1
#=GS H6VTA3/192-356      DE Matrix
#=GS H6VTA3/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q9DLD5/192-356      AC Q9DLD5
#=GS Q9DLD5/192-356      OS Newcastle disease virus B1/48
#=GS Q9DLD5/192-356      DE Matrix protein
#=GS Q9DLD5/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS J7ILR1/192-356      AC J7ILR1
#=GS J7ILR1/192-356      OS Avian avulavirus 1
#=GS J7ILR1/192-356      DE Matrix protein
#=GS J7ILR1/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS B7U9G7/191-357      AC B7U9G7
#=GS B7U9G7/191-357      OS Avian avulavirus 1
#=GS B7U9G7/191-357      DE Matrix protein
#=GS B7U9G7/191-357      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS P11206/192-356      AC P11206
#=GS P11206/192-356      OS Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)
#=GS P11206/192-356      DE Matrix protein
#=GS P11206/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS A0A068BFA0/192-356  AC A0A068BFA0
#=GS A0A068BFA0/192-356  OS Avian avulavirus 1
#=GS A0A068BFA0/192-356  DE Matrix protein
#=GS A0A068BFA0/192-356  DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H6USJ9/192-356      AC H6USJ9
#=GS H6USJ9/192-356      OS Avian avulavirus 1
#=GS H6USJ9/192-356      DE Matrix
#=GS H6USJ9/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS D9I7S8/192-356      AC D9I7S8
#=GS D9I7S8/192-356      OS Avian avulavirus 1
#=GS D9I7S8/192-356      DE Matrix protein
#=GS D9I7S8/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q83837/192-356      AC Q83837
#=GS Q83837/192-356      OS Avian avulavirus 1
#=GS Q83837/192-356      DE Matrix protein
#=GS Q83837/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS G5DD24/3-171        AC G5DD24
#=GS G5DD24/3-171        OS Avian avulavirus 1
#=GS G5DD24/3-171        DE Matrix protein
#=GS G5DD24/3-171        DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS D0Q1G6/192-356      AC D0Q1G6
#=GS D0Q1G6/192-356      OS Pigeon paramyxovirus 1
#=GS D0Q1G6/192-356      DE Matrix protein
#=GS D0Q1G6/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS K7SXP2/192-356      AC K7SXP2
#=GS K7SXP2/192-356      OS Avian avulavirus 1
#=GS K7SXP2/192-356      DE Matrix protein
#=GS K7SXP2/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS Q8BAB7/1-158        AC Q8BAB7
#=GS Q8BAB7/1-158        OS Avian avulavirus 1
#=GS Q8BAB7/1-158        DE Matrix protein
#=GS Q8BAB7/1-158        DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GS H6VVU4/192-356      AC H6VVU4
#=GS H6VVU4/192-356      OS Pigeon paramyxovirus 1
#=GS H6VVU4/192-356      DE Matrix
#=GS H6VVU4/192-356      DR ORG; Viruses; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirus; Avian avulavirus 1; 
#=GF SQ 27
4g1oB02/188-356             KIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
Q9W7T8/192-356              ----AVLKVSGSSLYNLALNVTINVEVDPRSPLVKSLSKSDSGYYANLFLHIGLMTTVDRKGKKVTFDKLEKKIRSLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRAVAVTADHEVTSTKLEKGHTL--------
4g1oA02/188-356             KIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
4g1lB02/188-364             KIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTIAKYNPFKK
4g1lA02/188-356             KIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
4g1gB02/188-364             KIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTIAKYNPFKK
4g1gA02/188-356             KIPTAALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
K4MTN4/192-356              ----AALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKVIIQAGTQRAVAVTADHEVTSTKLEKGHTI--------
D7F443/192-356              ----AALKISGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMPTVDKKGKKVTFDKIEEKIRRLNLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
Q15EM2/192-356              ----AVLKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSRSDSGYYANLFLHIGLMSTVDKRGKKVTFDQLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSNSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
D7F419/191-356              ---TAALRISGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYHANLFLHIGLMSTVDKRGRKVTFDKIEEKIRRLNLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
H2DMX1/192-356              ----AVLKVSGSSLYNLALNVTIDVDVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKRGKKVTFDKIEEKIRRLNLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTKIERRHAI--------
P06157/192-356              ----AVLKVSGSSLYNLALNVTINVEVDSRSPLVKSLSKSDSGYYANLFLHIGLMTTVDRRGKKVTFDKLEKKIRSLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRTVAVTADHEVTSTKLEKGHTL--------
H6VTA3/192-356              ----AVLKVSGSSLYNLALNVTINVEVDSRSPLVKSLSKSDSGYYANLFLHIGLMTTVDRRGKKVTFDKLEKKIRSLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRTVAVTADHEVTSTKLEKGHTL--------
Q9DLD5/192-356              ----AVLKISGSSLYNLALNVTINVEVDPRSPLVKSLSKSDSGYYANLFLHIGLMTTVDRKGKKVTFDKLEKKIRSLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRAVAVTADHEVTSTKLEKGHTL--------
J7ILR1/192-356              ----AVLKVSGLSLYNLALNVTINVEVDPRSPLVKSLSKSDSGYYANLFLHIGLMTTVDRKGKKVTFDKLEKKIKSLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRAVAVTADHEVTSTKLEKGHTL--------
B7U9G7/191-357              --NCSIGRFLGSSLYNLALNVTINVEVDPRSPLVKSLSKSDSGYYANLFLHIGLMTTVDRKGKKVTFDKLEKKIRSLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTACLRSVKIIIQAGTQRAVAVTADHEVTSTKLEKGHTF--------
P11206/192-356              ----AALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTRLLAPFFSSSGTACYPISNASPQVAKILWSQTARLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
A0A068BFA0/192-356          ----AALKVSGSSLYNLALNVTIDVEVDHKSPLVKSLSKSEDGYYANLFLHIGLMSTVDKKGRKVTFDKLERKLRRLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTASLRSVKVVIQAGTQRAVAVTADHEVTSTKLEKGHTI--------
H6USJ9/192-356              ----TALKVSGSSLYNLALNVTIDVEVDHKSPLVKSLSKSENGYYANLFLHIGLMSTVDKKGRKVTFDKLERKIRRLDLSVGLSDVLGPSILVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTASLRSVKVIIQAGTQRAVAVTADHEVTSTKLEKGHTI--------
D9I7S8/192-356              ----AALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLNLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
Q83837/192-356              ----AALKVSGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKLERKIRRLDLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAYLRSVKVIIQAGTQRAVAVTADHEVTSTKLEKGHTI--------
G5DD24/3-171                KIPTAALKVSGSSLYNLALNVTIDVEVDHKSPLVKSLSRSENGYYANLFLHIGLMSTVDKKGRKVTFDKLERKLRRLDLSVGLSDVLGPSILVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTASLRSVKVIIQAGTQRAVAVTADHEVTSTKLEKGHTI--------
D0Q1G6/192-356              ----TALKISGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKRGKKVTFDKIEGXIRRLNLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTKIEKRHTI--------
K7SXP2/192-356              ----AVLKVSGSSPYNLALNVTIDVDVDSKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKIEGKIRRLNLSVGLSDVLGPSVLVKARGARTKLLSPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTRIEKKHAI--------
Q8BAB7/1-158                -----------SRLYNLALNVTIDVDVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKKGKKVTFDKIEEKIRRLNLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTRIEKRHTI--------
H6VVU4/192-356              ----TALKISGSSLYNLALNVTIDVEVDPKSPLVKSLSKSDSGYYANLFLHIGLMSTVDKRGKKVTFDKIEGKIRRLNLSVGLSDVLGPSVLVKARGARTKLLAPFFSSSGTACYPIANASPQVAKILWSQTAHLRSVKVIIQAGTQRAVAVTADHEVTSTRIEKRHTI--------
#=GC scorecons              000065776778889999999997989967999999998987998999999999969997798999998795888696999999999999899999999979989999899999999699999999999999949999978999999989999999999998698598600000000
#=GC scorecons_70           ____*_*****************************************************************_*************************************************************_*******************************_***________
#=GC scorecons_80           _______*_**************_****_**************************_*************_*_***_*_***************************************_***************_****************************_**_**_________
#=GC scorecons_90           ___________************_****__***********_*************_***__*_******_*_***_*_**********************_****************_***************_*****_**********************_**_**_________
//