# STOCKHOLM 1.0 #=GF ID 2.60.120.1680/FF/000003 #=GF DE Replicase polyprotein 1a #=GF AC 2.60.120.1680/FF/000003 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 15.953 #=GS P0C6X8/1735-1872 AC P0C6X8 #=GS P0C6X8/1735-1872 OS Murine hepatitis virus strain 2 #=GS P0C6X8/1735-1872 DE Replicase polyprotein 1ab #=GS P0C6X8/1735-1872 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6X8/1735-1872 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6V1/1787-1924 AC P0C6V1 #=GS P0C6V1/1787-1924 OS Murine hepatitis virus strain JHM #=GS P0C6V1/1787-1924 DE Replicase polyprotein 1a #=GS P0C6V1/1787-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6V1/1787-1924 DR GO; GO:0004197; GO:0097264; #=GS P0C6V1/1787-1924 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6V0/1788-1924 AC P0C6V0 #=GS P0C6V0/1788-1924 OS Murine hepatitis virus strain A59 #=GS P0C6V0/1788-1924 DE Replicase polyprotein 1a #=GS P0C6V0/1788-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6V0/1788-1924 DR GO; GO:0097264; #=GS P0C6V0/1788-1924 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6Y0/1787-1924 AC P0C6Y0 #=GS P0C6Y0/1787-1924 OS Murine hepatitis virus strain JHM #=GS P0C6Y0/1787-1924 DE Replicase polyprotein 1ab #=GS P0C6Y0/1787-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6Y0/1787-1924 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6X9/1788-1924 AC P0C6X9 #=GS P0C6X9/1788-1924 OS Murine hepatitis virus strain A59 #=GS P0C6X9/1788-1924 DE Replicase polyprotein 1ab #=GS P0C6X9/1788-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6X9/1788-1924 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6U9/1735-1872 AC P0C6U9 #=GS P0C6U9/1735-1872 OS Murine hepatitis virus strain 2 #=GS P0C6U9/1735-1872 DE Replicase polyprotein 1a #=GS P0C6U9/1735-1872 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6U9/1735-1872 DR EC; 3.4.19.12; 3.4.22.69; #=GS I7AWB5/1787-1924 AC I7AWB5 #=GS I7AWB5/1787-1924 OS Murine coronavirus #=GS I7AWB5/1787-1924 DE Polyprotein ORF1ab #=GS I7AWB5/1787-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C6GHR8/1786-1923 AC C6GHR8 #=GS C6GHR8/1786-1923 OS Rat coronavirus Parker #=GS C6GHR8/1786-1923 DE Orf1ab polyprotein #=GS C6GHR8/1786-1923 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C6GHR9/1786-1923 AC C6GHR9 #=GS C6GHR9/1786-1923 OS Rat coronavirus Parker #=GS C6GHR9/1786-1923 DE Orf1a polyprotein #=GS C6GHR9/1786-1923 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS Q9J3E9/1785-1921 AC Q9J3E9 #=GS Q9J3E9/1785-1921 OS Murine hepatitis virus #=GS Q9J3E9/1785-1921 DE RNA-directed RNA polymerase #=GS Q9J3E9/1785-1921 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C0KYS8/1788-1924 AC C0KYS8 #=GS C0KYS8/1788-1924 OS Murine coronavirus RA59/SJHM #=GS C0KYS8/1788-1924 DE ORF1a polyprotein #=GS C0KYS8/1788-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C0KYQ8/1788-1924 AC C0KYQ8 #=GS C0KYQ8/1788-1924 OS Murine coronavirus RA59/R13 #=GS C0KYQ8/1788-1924 DE ORF1a polyprotein #=GS C0KYQ8/1788-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C0KYT7/1788-1924 AC C0KYT7 #=GS C0KYT7/1788-1924 OS Murine coronavirus repA59/RJHM #=GS C0KYT7/1788-1924 DE ORF1a polyprotein #=GS C0KYT7/1788-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS I7B5F2/1787-1924 AC I7B5F2 #=GS I7B5F2/1787-1924 OS Murine coronavirus #=GS I7B5F2/1787-1924 DE Polyprotein ORF1a #=GS I7B5F2/1787-1924 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus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scorecons 967997999999989999999999999999669679969999995999999979999999976999799999999999999996999999999999999999996999999999999999999999999699979993 #=GC scorecons_70 ******************************_*************_************************************************************************************_*******_ #=GC scorecons_80 *_***_************************__*_***_******_****************__***_****************_********************_************************_*******_ #=GC scorecons_90 *__**_*******_****************__*__**_******_*******_********__***_****************_********************_************************_***_***_ //