# STOCKHOLM 1.0
#=GF ID 2.40.70.10/FF/000098
#=GF DE Chloroplast nucleoid DNA-binding protein-like
#=GF AC 2.40.70.10/FF/000098
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 73.475
#=GS Q9FHE2/277-483      AC Q9FHE2
#=GS Q9FHE2/277-483      OS Arabidopsis thaliana
#=GS Q9FHE2/277-483      DE Chloroplast nucleoid DNA-binding protein-like
#=GS Q9FHE2/277-483      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS D7TF03/224-427      AC D7TF03
#=GS D7TF03/224-427      OS Vitis vinifera
#=GS D7TF03/224-427      DE Uncharacterized protein
#=GS D7TF03/224-427      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS B9FKJ7/225-431      AC B9FKJ7
#=GS B9FKJ7/225-431      OS Oryza sativa Japonica Group
#=GS B9FKJ7/225-431      DE Os05g0511050 protein
#=GS B9FKJ7/225-431      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS B9ICG6/277-481      AC B9ICG6
#=GS B9ICG6/277-481      OS Populus trichocarpa
#=GS B9ICG6/277-481      DE Uncharacterized protein
#=GS B9ICG6/277-481      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS R0GCE4/274-481      AC R0GCE4
#=GS R0GCE4/274-481      OS Capsella rubella
#=GS R0GCE4/274-481      DE Uncharacterized protein
#=GS R0GCE4/274-481      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7MKV5/205-411      AC D7MKV5
#=GS D7MKV5/205-411      OS Arabidopsis lyrata subsp. lyrata
#=GS D7MKV5/205-411      DE Uncharacterized protein
#=GS D7MKV5/205-411      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A1D6FT79/277-481  AC A0A1D6FT79
#=GS A0A1D6FT79/277-481  OS Zea mays
#=GS A0A1D6FT79/277-481  DE Eukaryotic aspartyl protease family protein
#=GS A0A1D6FT79/277-481  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS I1HHR6/224-437      AC I1HHR6
#=GS I1HHR6/224-437      OS Brachypodium distachyon
#=GS I1HHR6/224-437      DE Uncharacterized protein
#=GS I1HHR6/224-437      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; 
#=GS A0A0D9WIJ2/225-433  AC A0A0D9WIJ2
#=GS A0A0D9WIJ2/225-433  OS Leersia perrieri
#=GS A0A0D9WIJ2/225-433  DE Uncharacterized protein
#=GS A0A0D9WIJ2/225-433  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS A0A0E0PPU2/225-431  AC A0A0E0PPU2
#=GS A0A0E0PPU2/225-431  OS Oryza rufipogon
#=GS A0A0E0PPU2/225-431  DE Uncharacterized protein
#=GS A0A0E0PPU2/225-431  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0E0A1H3/225-431  AC A0A0E0A1H3
#=GS A0A0E0A1H3/225-431  OS Oryza glumipatula
#=GS A0A0E0A1H3/225-431  DE Uncharacterized protein
#=GS A0A0E0A1H3/225-431  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS I1QKY9/225-431      AC I1QKY9
#=GS I1QKY9/225-431      OS Oryza glaberrima
#=GS I1QKY9/225-431      DE Uncharacterized protein
#=GS I1QKY9/225-431      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0D3G9N1/225-431  AC A0A0D3G9N1
#=GS A0A0D3G9N1/225-431  OS Oryza barthii
#=GS A0A0D3G9N1/225-431  DE Uncharacterized protein
#=GS A0A0D3G9N1/225-431  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS A0A0E0L4J7/443-649  AC A0A0E0L4J7
#=GS A0A0E0L4J7/443-649  OS Oryza punctata
#=GS A0A0E0L4J7/443-649  DE Uncharacterized protein
#=GS A0A0E0L4J7/443-649  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; 
#=GS A0A0E0DTS3/225-431  AC A0A0E0DTS3
#=GS A0A0E0DTS3/225-431  OS Oryza meridionalis
#=GS A0A0E0DTS3/225-431  DE Uncharacterized protein
#=GS A0A0E0DTS3/225-431  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0E0HGT2/225-431  AC A0A0E0HGT2
#=GS A0A0E0HGT2/225-431  OS Oryza sativa f. spontanea
#=GS A0A0E0HGT2/225-431  DE Uncharacterized protein
#=GS A0A0E0HGT2/225-431  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GF SQ 16
Q9FHE2/277-483              -SALSINLTDSLQFTPMLNTPMYPNSYYIGLESITIGTNI------TPTQVPLTLRQFDSQGNGGMLVDSGTTYTHLPEPFYSQLLTTLQSTITYPRATETESRTGFDLCYKVPCPNNNLTSLENDVMMIFPSITFHFLNNATLLLPQGNSFYAMSAPSDGSVVQCLLFQNMEDG-----D-----------YGPAGVFGSFQQQNVKVVYDLEKERIGFQAMDCVLEAA--
D7TF03/224-427              IGDLAISSNDHLQFTSLLKNPMYPNYYYIGLEAITVG-NA------TAIQVPSSLREFDSHGNGGMIIDSGTTYTHLPGPFYTQLLSMLQSIITYPRAQEQEARTGFDLCYRIPCPNNVVTDHDH----LLPSISFHFSNNVSLVLPQGNHFYAMGAPSNSTVVKCLLLQNMDDS-----D-----------SGPAGVFGSFQQQNVKVVYDLEKERIGFQPMDCASAAAS-
B9FKJ7/225-431              -GDLALSAKDDFLFTPMLKSITNPNFYYIGLEGVSIG-DG------AAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTAILSSLASVILYERSYDLEMRTGFDLCFKIPCTHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDND-----DD-DD-DVGGANNGPGAVLGSFQMQNVEVVYDMEAGRIGFQPKDCALH----
B9ICG6/277-481              VGDIALTSKDDMQFTPMLNSPMYPNFYYVGLEAITVG-NV------SATEVPSSLREFDSLGNGGMKIDSGTTYTHLPEPFYSQVLSILQSTINYPRDTGMEMQTGFDLCYKVPRPNNNTLTSDD----LLPSITFHFLNNVSLVLPQGNHFYPVSAPGNPAVVKCLMFQSTDDG-----D-----------DGPAGVFGSFQQQNVEVVYDLEKERIGFQPMDCASAASSQ
R0GCE4/274-481              -SALSVNLTDSLQFTPMLNAPVYPNSYYIGLESVTIGTDM------TLTQVPLTLRQFDSRGNGGMLIDSGTTYTHLPDPFYSQLLTTLQSTITYPRATETESRTGFDLCYKVPCPNNNLTSLENDVSMVFPSITFNFLNNATLLLPQGNTFYAMSAPSDNSVVKCLLFQNMEDG-----D-----------YGPAGVFGSFQQQNVKVVYDLEKERIGFQVMDCVLEATS-
D7MKV5/205-411              -SALSINLTDSLQFTPMLNTPVYPNSYYIGLESITIGTNI------TPTQVPLTLRQFDSQGNGGMLVDSGTTYTHLPNPFYSQLLTILQSTITYPRATETESRTGFDLCYKVPCPNNNLTSLENDVMMVFPSITFNFLNNATLLLPQGNSFYAMSAPSDGSVVQCLLFQNMEDG-----N-----------YGPAGVFGSFQQQNVKVVYDLEKERIGFQAMDCVLEAA--
A0A1D6FT79/277-481          -LALASSATDGFVFTPMLTSATYPNFYYVGLEGVDLG-GGGGGAVAAAAAASPSMGGVDAQGNGGVLVDTGTTYTHLPDPFYASVLSSVGAAAPYERSRELEARTGFDLCFRVPCARAPCADDE------LPALSLRLRGGGRLALPKQSSYYPVTAIRDSVVVKCLLFQRMEDG-----D-----------GGPAAVLGSFQMQNVEVVYDLAAGRVGFRPRDCALHA---
I1HHR6/224-437              IGDLALSVKDGFLFTPMLKSLTYPNFYYIGLEGVTIG-DN------AAIPAPPSLSGIDSEGNGGVIVDTGTTYTHLSDPFYASVLSSLSSTVPYNRSYELEIRTGFDLCLKVPCMHAPCNDDE------LPPITVHLGGDVTLALPKESCYYAVTAPRNSVVIKCLLFQRKDDDGVFSADNDDGEDASFSAGGPAAVLGSFQMQNVEVVYDLESGRVGFQPRDCAL-----
A0A0D9WIJ2/225-433          -GDLALSAKDDFLFTPMLKSITNPNFYYIGLEGVSIG-DG------SAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTSILSSLNSVIPYERSFDLERRTGFDLCFKIPCIHAPCTQDE------LPLISLHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDDD-----DDVDGNDDVGDANGPGAVLGSFQMQNVEVVYDLEVGRVGFLPKDCALH----
A0A0E0PPU2/225-431          -GDLALSAKDDFLFTPMLKSITNPNFYYIGLEGVSIG-DG------AAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTAILSSLASVILYERSYDLEMRTGFDLCFKIPCTHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDND-----DD-DD-DVGGANNGPGAVLGSFQMQNVEVVYDMEAGRIGFQPKDCALH----
A0A0E0A1H3/225-431          -GDLALSAKDDFLFTPMLKSITNPNFYYIGLEGVSIG-DG------AAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLRDPFYTAILSSLASVIPYERSYDLEMRTGFDLCFKIPCTHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDDD-----DD-DD-DVGGANNGPGAVLGSFQMQNVEVVYDMEAGRIGFQPKDCALH----
I1QKY9/225-431              -GDLALSAKDDFLFTPMLKSITNPNFYYIGLEGVSIG-DG------AAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTAILSSLASVILYERSYDLEMRTGFDLCFKIPCTHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDDD-----DD-DD-DVGGANNGPGAVLGSFQMQNVEVVYDMEAGRIGFQPKDCALH----
A0A0D3G9N1/225-431          -GDLALSAKDDFLFTPMLKSITNPNFYYIGLEGVSIG-DG------AAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTAILSSLASVILYERSYDLEMRTGFDLCFKIPCTHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDDD-----DD-DD-DVGGANNGPGAVLGSFQMQNVEVVYDMEAGRIGFQPKDCALH----
A0A0E0L4J7/443-649          --DLALSAKDDFLFTPMLKSITNPNFYYIGLDGVSIG-DG------AAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTTILSSLASVIPYERSYDLEMRTGFDLCFKIPCPHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDDD-----DD-DDNDVGGANNGPGAVLGSFQMQNVEIVYDMEVGRIGFQPKDCALH----
A0A0E0DTS3/225-431          -GDLALSAKDDVLFTPMLKSITNPNFYYIGLEGVSIG-DG------AAIAA-PSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTTILSSLASVIPYERSYDLEMRTGFDLCFKIPCTHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDDD-----DD-DDNDVGGANNGPGAVLGSFQMQNVEVVYDMEAGRIGFQPKDCALH----
A0A0E0HGT2/225-431          -GDLALSAKDDFLFTPMLKSITNPNFYYIGLEGVSIG-DG------AAIAAPPSLSSIDSEGNGGMIVDTGTTYTHLPDPFYTAILSSLASVILYERSYDLEMRTGFDLCFKIPCTHTPCTQDE------LPLINFHFLGDVKLTLPKDSCYYAVTAPKNSVVVKCLLFQRMDDD-----DD-DD-DVGGANNGPGAVLGSFQMQNVEVVYDMEAGRIGFQPKDCALH----
#=GC scorecons              0558656459454998895545599599799857579064000000565467568545984999975796999999976999545965848574949536494899999967797455546447000000794857675555494996564797659746559879988957785000008102102111114996696999959996899967469799764996642000
#=GC scorecons_70           ___**____*___*****_____**_******_*_**__________*___*_**___**_*****_**_************___**_*_*_*_*_*__*_*_************_____*__*______**_*_***_____*_***___****_**_*__********_***______*____________**__******_**********__******_****_____
#=GC scorecons_80           ___*_____*___*****_____**_******_*_**______________*__*___**_*****_**_********_***___*__*_*_*_*_*____*_*******_*_**________*_______*_*___*_____*_**____***__**____********__**______*____________**__*_****_***_****_*__*****__**_______
#=GC scorecons_90           ___*_____*___*****_____**_**_***____*_________________*___*__****___*_*******__***___*__*_____*_*____*_*******___*_________________*_*_________*_**_____*___*_____**_*****___*______*____________**__*_****_***_****____*_**___**_______
//