# STOCKHOLM 1.0 #=GF ID 2.20.70.10/FF/000075 #=GF DE Pre-mRNA-processing protein 40A isoform A #=GF AC 2.20.70.10/FF/000075 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 79.406 #=GS B6EUA9/227-270 AC B6EUA9 #=GS B6EUA9/227-270 OS Arabidopsis thaliana #=GS B6EUA9/227-270 DE Pre-mRNA-processing protein 40A #=GS B6EUA9/227-270 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS B6EUA9/227-270 DR GO; GO:0005829; GO:0016592; #=GS F4JCC1/244-297 AC F4JCC1 #=GS F4JCC1/244-297 OS Arabidopsis thaliana #=GS F4JCC1/244-297 DE Pre-mRNA-processing protein 40B #=GS F4JCC1/244-297 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F4JCC1/244-297 DR GO; GO:0005634; #=GS A0A1I9LM87/225-278 AC A0A1I9LM87 #=GS A0A1I9LM87/225-278 OS Arabidopsis thaliana #=GS A0A1I9LM87/225-278 DE Pre-mRNA-processing protein 40B #=GS A0A1I9LM87/225-278 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F6H177/92-137 AC F6H177 #=GS F6H177/92-137 OS Vitis vinifera #=GS F6H177/92-137 DE Uncharacterized protein #=GS F6H177/92-137 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS W1NGF8/252-296 AC W1NGF8 #=GS W1NGF8/252-296 OS Amborella trichopoda #=GS W1NGF8/252-296 DE Uncharacterized protein #=GS W1NGF8/252-296 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Amborellales; Amborellaceae; Amborella; Amborella trichopoda; #=GS A0A445H3M9/235-279 AC A0A445H3M9 #=GS A0A445H3M9/235-279 OS Glycine soja #=GS A0A445H3M9/235-279 DE Pre-mRNA-processing protein 40A isoform A #=GS A0A445H3M9/235-279 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS A0A061FG70/264-307 AC A0A061FG70 #=GS A0A061FG70/264-307 OS Theobroma cacao #=GS A0A061FG70/264-307 DE Pre-mRNA-processing protein 40A isoform 1 #=GS A0A061FG70/264-307 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Byttnerioideae; Theobroma; Theobroma cacao; #=GS A0A1U8MJB5/218-262 AC A0A1U8MJB5 #=GS A0A1U8MJB5/218-262 OS Gossypium hirsutum #=GS A0A1U8MJB5/218-262 DE pre-mRNA-processing protein 40A-like isoform X2 #=GS A0A1U8MJB5/218-262 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; #=GS V4LZH1/246-297 AC V4LZH1 #=GS V4LZH1/246-297 OS Eutrema salsugineum #=GS V4LZH1/246-297 DE Uncharacterized protein #=GS V4LZH1/246-297 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS A0A1J3GEL3/241-293 AC A0A1J3GEL3 #=GS A0A1J3GEL3/241-293 OS Noccaea caerulescens #=GS A0A1J3GEL3/241-293 DE Pre-mRNA-processing protein 40B #=GS A0A1J3GEL3/241-293 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; #=GS A0A0S3RPR9/235-279 AC A0A0S3RPR9 #=GS A0A0S3RPR9/235-279 OS Vigna angularis var. angularis #=GS A0A0S3RPR9/235-279 DE Uncharacterized protein #=GS A0A0S3RPR9/235-279 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna; Vigna angularis; Vigna angularis var. angularis; #=GS V7CS21/235-279 AC V7CS21 #=GS V7CS21/235-279 OS Phaseolus vulgaris #=GS V7CS21/235-279 DE Uncharacterized protein #=GS V7CS21/235-279 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus; Phaseolus vulgaris; #=GS A0A0D2U7V5/218-263 AC A0A0D2U7V5 #=GS A0A0D2U7V5/218-263 OS Gossypium raimondii #=GS A0A0D2U7V5/218-263 DE Uncharacterized protein #=GS A0A0D2U7V5/218-263 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium raimondii; #=GS D7KPQ6/228-271 AC D7KPQ6 #=GS D7KPQ6/228-271 OS Arabidopsis lyrata subsp. lyrata #=GS D7KPQ6/228-271 DE Uncharacterized protein #=GS D7KPQ6/228-271 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A1S3UFP1/235-279 AC A0A1S3UFP1 #=GS A0A1S3UFP1/235-279 OS Vigna radiata var. radiata #=GS A0A1S3UFP1/235-279 DE pre-mRNA-processing protein 40A #=GS A0A1S3UFP1/235-279 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna; Vigna radiata; Vigna radiata var. radiata; #=GS K7M5R6/235-279 AC K7M5R6 #=GS K7M5R6/235-279 OS Glycine max #=GS K7M5R6/235-279 DE Uncharacterized protein #=GS K7M5R6/235-279 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A0L9V1C4/235-279 AC A0A0L9V1C4 #=GS A0A0L9V1C4/235-279 OS Vigna angularis #=GS A0A0L9V1C4/235-279 DE Uncharacterized protein #=GS A0A0L9V1C4/235-279 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna; Vigna angularis; #=GS V7CU66/235-279 AC V7CU66 #=GS V7CU66/235-279 OS Phaseolus vulgaris #=GS V7CU66/235-279 DE Uncharacterized protein #=GS V7CU66/235-279 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus; Phaseolus vulgaris; #=GS I1MXF9/235-278 AC I1MXF9 #=GS I1MXF9/235-278 OS Glycine max #=GS I1MXF9/235-278 DE Uncharacterized protein #=GS I1MXF9/235-278 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A445GAS7/235-278 AC A0A445GAS7 #=GS A0A445GAS7/235-278 OS Glycine soja #=GS A0A445GAS7/235-278 DE Pre-mRNA-processing protein 40A isoform A #=GS A0A445GAS7/235-278 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS A0A061FFL7/264-307 AC A0A061FFL7 #=GS A0A061FFL7/264-307 OS Theobroma cacao #=GS A0A061FFL7/264-307 DE Pre-mRNA-processing protein 40A isoform 3 #=GS A0A061FFL7/264-307 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Byttnerioideae; Theobroma; Theobroma cacao; #=GS A0A061FEF2/264-307 AC A0A061FEF2 #=GS A0A061FEF2/264-307 OS Theobroma cacao #=GS A0A061FEF2/264-307 DE Pre-mRNA-processing protein 40A isoform 5 #=GS A0A061FEF2/264-307 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Byttnerioideae; Theobroma; Theobroma cacao; #=GS A0A1U8MJF4/260-304 AC A0A1U8MJF4 #=GS A0A1U8MJF4/260-304 OS Gossypium hirsutum #=GS A0A1U8MJF4/260-304 DE pre-mRNA-processing protein 40A-like isoform X1 #=GS A0A1U8MJF4/260-304 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; #=GS A0A0D2U4X1/260-305 AC A0A0D2U4X1 #=GS A0A0D2U4X1/260-305 OS Gossypium raimondii #=GS A0A0D2U4X1/260-305 DE Uncharacterized protein #=GS A0A0D2U4X1/260-305 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium raimondii; #=GS A0A1U8LT43/218-263 AC A0A1U8LT43 #=GS A0A1U8LT43/218-263 OS Gossypium hirsutum #=GS A0A1U8LT43/218-263 DE pre-mRNA-processing protein 40A-like isoform X2 #=GS A0A1U8LT43/218-263 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; #=GS A0A0D2SLJ2/218-263 AC A0A0D2SLJ2 #=GS A0A0D2SLJ2/218-263 OS Gossypium raimondii #=GS A0A0D2SLJ2/218-263 DE Uncharacterized protein #=GS A0A0D2SLJ2/218-263 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium raimondii; #=GS A0A1U8LT51/260-305 AC A0A1U8LT51 #=GS A0A1U8LT51/260-305 OS Gossypium hirsutum #=GS A0A1U8LT51/260-305 DE pre-mRNA-processing protein 40A-like isoform X1 #=GS A0A1U8LT51/260-305 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum; #=GS D7LA20/245-297 AC D7LA20 #=GS D7LA20/245-297 OS Arabidopsis lyrata subsp. lyrata #=GS D7LA20/245-297 DE FF domain-containing protein #=GS D7LA20/245-297 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS K7N3B1/260-311 AC K7N3B1 #=GS K7N3B1/260-311 OS Glycine max #=GS K7N3B1/260-311 DE Uncharacterized protein #=GS K7N3B1/260-311 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS K7N3A9/260-311 AC K7N3A9 #=GS K7N3A9/260-311 OS Glycine max #=GS K7N3A9/260-311 DE Uncharacterized protein #=GS K7N3A9/260-311 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A0R0ELA7/260-311 AC A0A0R0ELA7 #=GS A0A0R0ELA7/260-311 OS Glycine max #=GS A0A0R0ELA7/260-311 DE Uncharacterized protein #=GS A0A0R0ELA7/260-311 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS K7LLE9/261-303 AC K7LLE9 #=GS K7LLE9/261-303 OS Glycine max #=GS K7LLE9/261-303 DE Uncharacterized protein #=GS K7LLE9/261-303 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS K7LLE8/261-303 AC K7LLE8 #=GS K7LLE8/261-303 OS Glycine max #=GS K7LLE8/261-303 DE Uncharacterized protein #=GS K7LLE8/261-303 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A0B2QNZ5/270-312 AC A0A0B2QNZ5 #=GS A0A0B2QNZ5/270-312 OS Glycine soja #=GS A0A0B2QNZ5/270-312 DE Pre-mRNA-processing factor 40 like A #=GS A0A0B2QNZ5/270-312 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GF SQ 34 B6EUA9/227-270 --ASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLAS-------- F4JCC1/244-297 ADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEG A0A1I9LM87/225-278 ADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEG F6H177/92-137 -DASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEKSVS------- W1NGF8/252-296 --ASTVWKEFTTPEGRKYYYNKVTKQSKWTIPDELKLAREQAEKNGT------- A0A445H3M9/235-279 --ASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKLAREQAQNAAN------- A0A061FG70/264-307 ---STVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVAS------- A0A1U8MJB5/218-262 --ASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAGAS------- V4LZH1/246-297 -DARTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAEKASVQGLHAE- A0A1J3GEL3/241-293 -DARTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIAREQAEKASVQGLHAKG A0A0S3RPR9/235-279 --ASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAAN------- V7CS21/235-279 --ASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAAN------- A0A0D2U7V5/218-263 --ASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQ------ D7KPQ6/228-271 --ASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLAS-------- A0A1S3UFP1/235-279 --ASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAAN------- K7M5R6/235-279 --ASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKLAREQAQNAAN------- A0A0L9V1C4/235-279 --ASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAAN------- V7CU66/235-279 --ASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAAN------- I1MXF9/235-278 --ASTVWKEFTS-EGRKYYYNKVTQQSTWSIPEELKLAREQAQKAAN------- A0A445GAS7/235-278 --ASTVWKEFTS-EGRKYYYNKVTQQSTWSIPEELKLAREQAQKAAN------- A0A061FFL7/264-307 ---STVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVAS------- A0A061FEF2/264-307 ---STVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAQVVAS------- A0A1U8MJF4/260-304 --ASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAGAS------- A0A0D2U4X1/260-305 --ASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQ------ A0A1U8LT43/218-263 --ASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQ------ A0A0D2SLJ2/218-263 --ASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAASSQ------ A0A1U8LT51/260-305 --ASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQAAASQ------ D7LA20/245-297 -DARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMKIAREQAEKASLQGPHAEG K7N3B1/260-311 -DATTNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQVEKAIVSGSRPE- K7N3A9/260-311 -DATTNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQVEKAIVSGSRPE- A0A0R0ELA7/260-311 -DATTNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQVEKAIVSGSRPE- K7LLE9/261-303 --ATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKA--------- K7LLE8/261-303 --ATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKA--------- A0A0B2QNZ5/270-312 --ATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKA--------- #=GC scorecons 017594999676679799979979569596798877789977647431000000 #=GC scorecons_70 __*_*_******************_**_*_*************_*_________ #=GC scorecons_80 __*_*_***_____**********__*_*__**********_____________ #=GC scorecons_90 ____*_***_____*_***_**_*__*_*__***____**______________ //