# STOCKHOLM 1.0
#=GF ID 2.130.10.10/FF/001143
#=GF DE Pre-mRNA-splicing factor rse-1, putative
#=GF AC 2.130.10.10/FF/001143
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.442
#=GS Q0D7W8/61-281          AC Q0D7W8
#=GS Q0D7W8/61-281          OS Oryza sativa Japonica Group
#=GS Q0D7W8/61-281          DE Os07g0203800 protein
#=GS Q0D7W8/61-281          DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS B0ET63/13-393          AC B0ET63
#=GS B0ET63/13-393          OS Entamoeba dispar SAW760
#=GS B0ET63/13-393          DE Pre-mRNA-splicing factor rse-1, putative
#=GS B0ET63/13-393          DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba dispar; 
#=GS H3FL41/13-288          AC H3FL41
#=GS H3FL41/13-288          OS Pristionchus pacificus
#=GS H3FL41/13-288          DE Uncharacterized protein
#=GS H3FL41/13-288          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0ED07/13-363_385-397  AC A0ED07
#=GS A0ED07/13-363_385-397  OS Paramecium tetraurelia
#=GS A0ED07/13-363_385-397  DE Uncharacterized protein
#=GS A0ED07/13-363_385-397  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS C4MA02/13-393          AC C4MA02
#=GS C4MA02/13-393          OS Entamoeba histolytica
#=GS C4MA02/13-393          DE Cpsf a subunit region protein putative
#=GS C4MA02/13-393          DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS K2HHC3/13-393          AC K2HHC3
#=GS K2HHC3/13-393          OS Entamoeba nuttalli P19
#=GS K2HHC3/13-393          DE CPSF A subunit region protein, putative
#=GS K2HHC3/13-393          DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba nuttalli; 
#=GS N9TD17/13-393          AC N9TD17
#=GS N9TD17/13-393          OS Entamoeba histolytica HM-1:IMSS-A
#=GS N9TD17/13-393          DE Pre-mRNA-splicing factor rse-1, putative
#=GS N9TD17/13-393          DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M7WR27/13-393          AC M7WR27
#=GS M7WR27/13-393          OS Entamoeba histolytica HM-3:IMSS
#=GS M7WR27/13-393          DE Pre-mRNA-splicing factor rse-1, putative
#=GS M7WR27/13-393          DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M3UR35/13-393          AC M3UR35
#=GS M3UR35/13-393          OS Entamoeba histolytica HM-1:IMSS-B
#=GS M3UR35/13-393          DE CPSF A subunit region protein, putative
#=GS M3UR35/13-393          DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS M2SBN8/13-393          AC M2SBN8
#=GS M2SBN8/13-393          OS Entamoeba histolytica KU27
#=GS M2SBN8/13-393          DE PremRNA-splicing factor rse-1, putative
#=GS M2SBN8/13-393          DR ORG; Eukaryota; Entamoebidae; Entamoeba; Entamoeba histolytica; 
#=GS A0CSI5/13-359_381-393  AC A0CSI5
#=GS A0CSI5/13-359_381-393  OS Paramecium tetraurelia
#=GS A0CSI5/13-359_381-393  DE Uncharacterized protein
#=GS A0CSI5/13-359_381-393  DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GF SQ 11
Q0D7W8/61-281                  AVLHVAQGCFRS-PDCVDVVLCKEN-SLELVVIGE-DGVLQSICEQTTFGIIKDVGVLNWRCTHFGLMPKIEGKEILVILSDSGKLSLLYFCSEMHRFFAIANIELSKPGNLRHRLGRILAIDRESRFVAVSAYEDEFAFVRVSVDHKLHAPNGEIEEDAKIISTAYNTSSIHGTVWSMCFISTCLDEEYYPVVAMIVNRGSDV----------NDLALYGLD------------------------------------------------------------------------------SHK--------------------------------RTIDRIST-------------------------------------------------------------
B0ET63/13-393                  KITHSLFGDFSG-NGAIELLLVRSQTTIELYRINE-NDQVSLLLQESVFCMIRSICKIRIGS---------EAKDYILIGSDSGSITLLGYSFEQNKLIPICNEIFGKSGIRRVVPGEYICSDPMGRAAMIGAIEKQKLVYIFNRDN-----NGKIT-----ISSPLEAHKSNTICYNIIALNVGYDNPIFATIEVDYNEQYLSHIEHRIIK--KYVVLYELDLGLNHVIRKVAEPIDPTSNYLIPILSLNEECHYGIFICSEDKITWFNIGHD-KVCIPIPKYHNQSNTHSTLITSHVMRTHKGKHFVLLQSEFGDLFQLLFDTKEKGQLDNIHIRYFDSIPIALSLQFSKRGHLLCIGEYGDSILYNIISMENINVPLEKNGRLEFERHEEILNLEEFYRFKS
H3FL41/13-288                  AINQAVHGAFSGTAKVQEIAIGRGN-VIQLLYCDPKTGKIQTLCNHEVFGIVRSLMAFRLTG---------GTKDFLVVGSDSGRIVILEYHPEKAAFERVHQETFGKTGCRRIVPGHYLATDPKGRAILIGAVERQKLVYVMNRDA-----QANLT-----ISSPLEAHKQFTLCYGVVGIDVGFDNPTFACLEYDYEDCDNDPTGEIVAKTQQTLTFYELDLGLNHVVRKYAEALQDPGNMLIPVPGGQDGPS-GVIVCCENYIVYKNLGDQPDIRVPIPRRR-----------------------------------------------------------------LKRG--WAQCEY-----------------------------------------CG
A0ED07/13-363_385-397          GIQKAIYGNFSG-PKAQEIVVSKVK-HIELLKINDSNGKLETIASQEVFGIIRSIHSFRFPG---------NNRDNLVIGSDSGRVVVLGFDGQKNMFVKVHQETYGKTGCRRIVPGQYLACDPKGRAFMISAVEKHKFVYILTRE------NEKIT-----ISSPLEAPKSHTIVFDIVGLDAGYDNAQFAAIESDYGDWQDKDSAVCTGIQTKFLTIYEMDFGLNTVRRQRSDPIHISSHSLLMVPNAPDGPG-GVIVLCEDFLHYRGPKNQ-EMKVPYPKNQGMPADRGAMISSFGFYKQKSSFLYLLQSEYGDLFELSLQF-TKDEVHSIRMIYFDTIPVANSLCLMRSKHLFAACEKGNHCFY-------------KYQREETSKLKHLSLLQEL---NN
C4MA02/13-393                  KITHSLFGDFSG-NGAIELLIVRSQTTIELYRINE-NDQVLLILQESVFCMIRSMCKIRVGS---------EAKDYILIGSDSGSITLLGYSSEQNKLIPIYNEIFGKSGIRRVVPGEYICSDPMGRAAMIGAIEKQKLVYIFNRDS-----NGKIT-----ISSPLEAHKSNTICYNIIALNVGYDNPMFATIEVDYNEQYLSHIEHRIIK--KYVVFYELDLGLNHVIRKVAEPIDPTSNYLIPILSLNEGYHYGIFICSEDKITWFNIGHD-KISIPIPKYHNQSNTHSTLITSHVMRTHKGKHFVLLQSEFGDLFQLSFDTKEKGQLDNIHLKYFDSIPTALSLQFSKRGHFLCVGEYGDSILYNIISMENISIPFEKDGRLEFERHKEILNLEEIYRFKS
K2HHC3/13-393                  KITHSLFGDFSG-NGVIELLIVRSQTTIELYRINE-NDQVSLILQESVFCMIRSMCKIRIGS---------EAKDYILIGSDSGSITLLGYSSEQNKLIPIYNEIFGKSGIRRVVPGEYICSDPMGRAAMIGAIEKQKLVYIFNRDS-----NGKIT-----ISSPLEAHKSNTICYNIIALNVGYDNPMFATIEVDYNEQYLSHIEHRIIK--KYVVFYELDLGLNHVIRKVAEPIDPTSNYLIPILSLNEGYHYGLFICSEDKITWFNIGHD-KICIPIPKYHNQSNTHSTLITSHVMRTHKGKHFVLLQSEFGDLFQLSFDIKEKGQLDNIHLRYFDSIPTALSLQFSKRGHFLCVGEYGDSILYNIISMENITIPFEKDGRLEFERHKEILNLEEIYRFKS
N9TD17/13-393                  KITHSLFGDFSG-NGAIELLIVRSQTTIELYRINE-NDQVLLILQESVFCMIRSMCKIRVGS---------EAKDYILIGSDSGSITLLGYSSEQNKLIPIYNEIFGKSGIRRVVPGEYICSDPMGRAAMIGAIEKQKLVYIFNRDS-----NGKIT-----ISSPLEAHKSNTICYNIIALNVGYDNPMFATIEVDYNEQYLSHIEHRIIK--KYVVFYELDLGLNHVIRKVAEPIDPTSNYLIPILSLNEGYHYGIFICSEDKITWFNIGHD-KISIPIPKYHNQSNTHSTLITSHVMRTHKGKHFVLLQSEFGDLFQLSFDTKEKGQLDNIHLKYFDSIPTALSLQFSKRGHFLCVGEYGDSILYNIISMENISIPFEKDGRLEFERHKEILNLEEIYRFKS
M7WR27/13-393                  KITHSLFGDFSG-NGAIELLIVRSQTTIELYRINE-NDQVLLILQESVFCMIRSMCKIRVGS---------EAKDYILIGSDSGSITLLGYSSEQNKLIPIYNEIFGKSGIRRVVPGEYICSDPMGRAAMIGAIEKQKLVYIFNRDS-----NGKIT-----ISSPLEAHKSNTICYNIIALNVGYDNPMFATIEVDYNEQYLSHIEHRIIK--KYVVFYELDLGLNHVIRKVAEPIDPTSNYLIPILSLNEGYHYGIFICSEDKITWFNIGHD-KISIPIPKYHNQSNTHSTLITSHVMRTHKGKHFVLLQSEFGDLFQLSFDTKEKGQLDNIHLKYFDSIPTALSLQFSKRGHFLCVGEYGDSILYNIISMENISIPFEKDGRLEFERHKEILNLEEIYRFKS
M3UR35/13-393                  KITHSLFGDFSG-NGAIELLIVRSQTTIELYRINE-NDQVLLILQESVFCMIRSMCKIRVGS---------EAKDYILIGSDSGSITLLGYSSEQNKLIPIYNEIFGKSGIRRVVPGEYICSDPMGRAAMIGAIEKQKLVYIFNRDS-----NGKIT-----ISSPLEAHKSNTICYNIIALNVGYDNPMFATIEVDYNEQYLSHIEHRIIK--KYVVFYELDLGLNHVIRKVAEPIDPTSNYLIPILSLNEGYHYGIFICSEDKITWFNIGHD-KISIPIPKYHNQSNTHSTLITSHVMRTHKGKHFVLLQSEFGDLFQLSFDTKEKGQLDNIHLKYFDSIPTALSLQFSKRGHFLCVGEYGDSILYNIISMENISIPFEKDGRLEFERHKEILNLEEIYRFKS
M2SBN8/13-393                  KITHSLFGDFSG-NGAIELLIVRSQTTIELYRINE-NDQVLLILQESVFCMIRSMCKIRVGS---------EAKDYILIGSDSGSITLLGYSSEQNKLIPIYNEIFGKSGIRRVVPGEYICSDPMGRAAMIGAIEKQKLVYIFNRDS-----NGKIT-----ISSPLEAHKSNTICYNIIALNVGYDNPMFATIEVDYNEQYLSHIEHRIIK--KYVVFYELDLGLNHVIRKVAEPIDPTSNYLIPILSLNEGYHYGIFICSEDKITWFNIGHD-KISIPIPKYHNQSNTHSTLITSHVMRTHKGKHFVLLQSEFGDLFQLSFDTKEKGQLDNIHLKYFDSIPTALSLQFSKRGHFLCVGEYGDSILYNIISMENISIPFEKDGRLEFERHKEILNLEEIYRFKS
A0CSI5/13-359_381-393          GIQKAIYGNFSG-PKAQEIVVSKVK-HIELLKINES----KTIASQEVFGIIRSIHSFRFPG---------NNRDNLVIGSDSGRVVVLGFDGLKNMFVKVHQETYGKTGCRRIVPGQYLACDPKGRAFMISAVEKHKFVYILTRE------NEKIT-----ISSPLEAPKSHTIVFDIVGLDAGYDNAQFAAIESDYGDWQDKDSAVCTGIQTKFLTIYEMDFGLNTVRRQRSDPIHISSHALLMVPNAPDGPG-GVIVLCEDFLHYRGPKNQ-EMKVPYPKNQGMPTDRGAMISSFGFYKQKSSFLYLLQSEYGDLFELSLQF-TKDEVHSIRMIYFDTIPVANSLCLMRSKHLFAACEKGNHCFY-------------KYQREETNKLKHLSLLQEL---NN
#=GC scorecons                 473644493967044547555373413779436560443434734546956776533563440000000005477466759999464694744645464474564679593694669466549647964576959655566545672000007557600000997767746546555465465566974377466366553333333223230053645977945553525424444323442543433224522154343354242323333303424535423222222222323222235622222333333333323322112322222322344636443233222433323323533222231111111111111312313222232222323211123
#=GC scorecons_70              _*_____*_***_____*____*____***__*_________*____**_****____*______________**_***_****____*_*______*__*_____**_*__*__**_**__**_**___*_*_*____*_____*______*__**_____*******_*__*____*__*__*_**__**_**_____________________*__****________________________________________________________________________________*___________________________________*_*_______________________________________________________________
#=GC scorecons_80              _*_____*_*_______*_________***__________________*__**____________________**___*_****____*_*________________*_*__*___*_____*___*___*_*_*__________*______*__*______**____*_________________*___*____________________________*_**______________________________________________________________________________________________________________________________________________________________________________________
#=GC scorecons_90              _______*_*___________________*__________________*_______________________________****____*__________________*_*__*___*_____*___*_____*_*___________________________**______________________*________________________________*__*______________________________________________________________________________________________________________________________________________________________________________________
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