# STOCKHOLM 1.0
#=GF ID 1.25.40.990/FF/000018
#=GF DE 26S proteasome regulatory subunit
#=GF AC 1.25.40.990/FF/000018
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 94.744
#=GS Q23449/2-220      AC Q23449
#=GS Q23449/2-220      OS Caenorhabditis elegans
#=GS Q23449/2-220      DE 26S proteasome non-ATPase regulatory subunit 8
#=GS Q23449/2-220      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q23449/2-220      DR GO; GO:0005515; GO:0005838; 
#=GS A2DEU7/2-233      AC A2DEU7
#=GS A2DEU7/2-233      OS Trichomonas vaginalis
#=GS A2DEU7/2-233      DE Uncharacterized protein
#=GS A2DEU7/2-233      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS C4YKH2/2-251      AC C4YKH2
#=GS C4YKH2/2-251      OS Candida albicans WO-1
#=GS C4YKH2/2-251      DE Uncharacterized protein
#=GS C4YKH2/2-251      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS B8BQK4/2-233      AC B8BQK4
#=GS B8BQK4/2-233      OS Thalassiosira pseudonana
#=GS B8BQK4/2-233      DE 26S proteasome regulatory subunit
#=GS B8BQK4/2-233      DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; 
#=GS H3FJF1/55-246     AC H3FJF1
#=GS H3FJF1/55-246     OS Pristionchus pacificus
#=GS H3FJF1/55-246     DE Uncharacterized protein
#=GS H3FJF1/55-246     DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS B9WCG8/2-251      AC B9WCG8
#=GS B9WCG8/2-251      OS Candida dubliniensis CD36
#=GS B9WCG8/2-251      DE 26s proteasome regulatory subunit, putative
#=GS B9WCG8/2-251      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida dubliniensis; 
#=GS A8WTE5/1-220      AC A8WTE5
#=GS A8WTE5/1-220      OS Caenorhabditis briggsae
#=GS A8WTE5/1-220      DE Protein CBR-RPN-12
#=GS A8WTE5/1-220      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5V2Y5/1-220  AC A0A2G5V2Y5
#=GS A0A2G5V2Y5/1-220  OS Caenorhabditis nigoni
#=GS A0A2G5V2Y5/1-220  DE Uncharacterized protein
#=GS A0A2G5V2Y5/1-220  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A2FXY1/3-218      AC A2FXY1
#=GS A2FXY1/3-218      OS Trichomonas vaginalis
#=GS A2FXY1/3-218      DE Uncharacterized protein
#=GS A2FXY1/3-218      DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS Q59SD0/2-251      AC Q59SD0
#=GS Q59SD0/2-251      OS Candida albicans SC5314
#=GS Q59SD0/2-251      DE Proteasome regulatory particle lid subunit
#=GS Q59SD0/2-251      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GF SQ 10
Q23449/2-220              ----SAAHKNLLAVWA--KEPK-DLVAVEKALNELTKV----------LSASSDLNDKQSALASKDLYEISVLLAILKHDFETFDDYINQMHTYYTMAPENS-------ENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQK---EQTSNAYISTPVRIEQSLMEGAYNKV---VLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQERKWHL--DGERY-----VFEI-
A2DEU7/2-233              ----EAFQQKFETLKSIMEAPKIETEKAMIVIKELRLKMLKI----PFLNGNDQETSNDVKVMLRTIYEYDAIVNLMIGNLASFFRTMELLKIAYHQRQELPRS-----PKMEILIGVYLIALLAENRTADFNVSYDAALL----LLGQHPTLEYAATMYKAISDNSFATI---YSLKSNPPHQLYDYITSNIINGARLSHANSIRNAYENLTTQELAQILHLDSPAEAAQFALARGWSLNADQTHI-----IFGKE
C4YKH2/2-251              -----SLQKLTAEIYS--LFGKGDYQGCQQLLAPIKLELVKHDLLVPLPSNTTDKNQINDLRIAQRILEIGALSSLLTNNYSGFENYFAQLRPFYSNPKLHNLQKVHINTDITKIISLYLLYLLSQGLISKFHVELEVIYNSSQYDAQQDKYLQFPINLESNLMEGNYIKIWKLLKEEKNLPCQEYTHFVDTLINALRFEIAKSLEKTYDSIPISNCKNLLYLPQELSDANFEKTLKETYQVDNWKFEDGVIYFTKN
B8BQK4/2-233              ----TDATALVNELTR--QFQANDVDGGKATLTKLKVRTRQR----LYMPSGSDASPEST-VLAATGLELGALLSVSDDDLDAFARNISQLKPYYATLASYSDANIAT-ERKCHVLGLNLMHLLVDNRLSEFHAELELLSE----AEAGSPYVSFPITLERQLMVGSYDEV---LNAGSHVPDPSYSFFMENLLETVRDSIADCVEVSYKSMKLTDAVTMMKFESTEELLDYVQEKREDWIVDGERL-----TFQP-
H3FJF1/55-246             MSALVELHKKLVDEWA--KDAKRDIANVEKILADIKTATIQ-------PGAEQGLAPKALCTIHRDIYEISALSAALREDLAAFDDAIEQVMAYYASATSDS-------DHKNLMIGLNLMYLVASNRLSEFHMLLEQVSQD---VQRANPYIAVPVTIEQSLMEGAYNKV---ALSEKNIPSPYFVPFFRVMTDAIRAEIAACMSKSFKKPQS-------------------------------------------
B9WCG8/2-251              -----SLQKLTAELYS--LFAKEDYQGCQQLLAPIKLELVKHDLLVPLPSNTTDKNQINDLRIAQRILEIGALSSLLTNNYSGFENYFAQLRPFYANPKLHNLQKVHINTDITKITSLYLLYLLSQGLISKFHVELEVIYNSSQYDVQQDKYLQFPINLESNLMEGNYIKIWKLLKEEKNLPCQEYTHFVDTLINALRFEIAKSLEKTYDSIPISNCKNLLYLPQELSDSNFEKTLKETYQVDNWKFEDGVIYFAKN
A8WTE5/1-220              ---MAAAHKNLLQLWS--KEPK-DNAAVQKALNDLSTA----------LSGANDMNDKAAALATKDLYEISVLQAINNGDFDTFDDNINQVHTYYIMVPENS-------ENKHLMTGLHLMFLLASNRLSDFHMLLEQVPQK---EQTSNAYISTPVRIEQSLMEGAYNKV---VLTEKNIPNPSYSVFIRIMLDTIRREIAASIEKSFKVLTAKDAAVMLLFDNDQQMLKFAGERKWHL--DGERF-----IFEV-
A0A2G5V2Y5/1-220          ---MAAAHKNLLQLWS--KEPK-DNAAVQKALNDLSAA----------LSGANDMNDKAAALATKDLYEISVLQAINNGDFDTFDDNINQVHTYYTMVPENS-------ENKHLMTGLHLMFLLASNRLSDFHMLLEQVPQK---EQTSNAYISTPVRIEQSLMEGAYNKV---VLTEKNIPNPSYSVFIRIMLDTIRREIAVSIEKSFKVLTAKDAAVMLLFDNDQQMLKFAGERKWHL--DGERF-----IFEV-
A2FXY1/3-218              ------------------TEGSFDVKRAASLIADLKNSLIDA----PYLTNQESTLDKTERINFRTLLEYDAIVCIKTRAISDFSRIMTQLRCSYFSSPDLLLS-----ERMPLLVSINLIHLLATNDISEFQIEYQHAKD----LIGNNKYLSYVTEVYRLLADNSFTRL---FPIIAAPPSDLFTQFASDLLNNTRNNHADSIEKSYEKLHINEIKKLLHFNTIEDAQAFATKRGWTFDANGYAL------FKA-
Q59SD0/2-251              -----SLQKLTAEIYS--LFGKGDYQGCQQLLAPIKLELVKHDLLVPLPSNTTDKNQINDLRIAQRILEIGALSSLLTNNYSGFENYFAQLRPFYSNPKLHNLQKVHINTDITKIISLYLLYLLSQGLISKFHVELEVIYNSSQYDAQQDKYLQFPINLESNLMEGNYIKIWKLLKEEKNLPCQEYTHFVDTLINALRFEIAKSLEKTYDSIPISNCKNLLYLPQELSDANFEKTLKETYQVDNWKFEDGVIYFTKN
#=GC scorecons            00001334423233240033461833434347446533222100002154433534343323435455954673453335444934353764459333333411000004443355665955975364575965367353310003333547644654554376664735600043355649342743744365544925593656657535443423246343322322363233433312632340000026220
#=GC scorecons_70         _______________________*_______*__*_________________________________*__**__________*_____*____*______________________*_*__**__*__*_**__**______________*___*______*__*_*__*________*_*___*__*________*___*_*_*__*______________________*_____________________*___
#=GC scorecons_80         _______________________*____________________________________________*______________*_____*____*________________________*__**_____*_*______________________________*____*_____________*___*__*________*___*______*________________________________________________
#=GC scorecons_90         _______________________*____________________________________________*______________*__________*________________________*__*________*_________________________________________________*_______________*___*_______________________________________________________
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