# STOCKHOLM 1.0
#=GF ID 1.25.40.90/FF/000050
#=GF DE Pol II C-terminal Interaction Domain Suppressor
#=GF AC 1.25.40.90/FF/000050
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 25.979
#=GS A5Z2V0/4-145      AC A5Z2V0
#=GS A5Z2V0/4-145      OS Caenorhabditis elegans
#=GS A5Z2V0/4-145      DE Pol II C-terminal Interaction Domain Suppressor
#=GS A5Z2V0/4-145      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A5Z2V0/4-145      DR GO; GO:0031124; 
#=GS Q9XVN9/4-145      AC Q9XVN9
#=GS Q9XVN9/4-145      OS Caenorhabditis elegans
#=GS Q9XVN9/4-145      DE Pol II C-terminal Interaction Domain Suppressor
#=GS Q9XVN9/4-145      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q9XVN9/4-145      DR GO; GO:0031124; 
#=GS Q8I4J5/4-143      AC Q8I4J5
#=GS Q8I4J5/4-143      OS Caenorhabditis elegans
#=GS Q8I4J5/4-143      DE Pol II C-terminal Interaction Domain Suppressor
#=GS Q8I4J5/4-143      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q8I4J5/4-143      DR GO; GO:0031124; 
#=GS A5Z2V1/5-147      AC A5Z2V1
#=GS A5Z2V1/5-147      OS Caenorhabditis elegans
#=GS A5Z2V1/5-147      DE Pol II C-terminal Interaction Domain Suppressor
#=GS A5Z2V1/5-147      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A5Z2V1/5-147      DR GO; GO:0031124; 
#=GS G0NXU8/4-145      AC G0NXU8
#=GS G0NXU8/4-145      OS Caenorhabditis brenneri
#=GS G0NXU8/4-145      DE Uncharacterized protein
#=GS G0NXU8/4-145      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A261CEV9/4-144  AC A0A261CEV9
#=GS A0A261CEV9/4-144  OS Caenorhabditis latens
#=GS A0A261CEV9/4-144  DE Uncharacterized protein
#=GS A0A261CEV9/4-144  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A2G5VJE4/4-145  AC A0A2G5VJE4
#=GS A0A2G5VJE4/4-145  OS Caenorhabditis nigoni
#=GS A0A2G5VJE4/4-145  DE Uncharacterized protein
#=GS A0A2G5VJE4/4-145  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8XF99/4-143      AC A8XF99
#=GS A8XF99/4-143      OS Caenorhabditis briggsae
#=GS A8XF99/4-143      DE Protein CBR-CIDS-2
#=GS A8XF99/4-143      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS E3LVM3/4-144      AC E3LVM3
#=GS E3LVM3/4-144      OS Caenorhabditis remanei
#=GS E3LVM3/4-144      DE CRE-CIDS-2 protein
#=GS E3LVM3/4-144      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A261CDJ6/4-145  AC A0A261CDJ6
#=GS A0A261CDJ6/4-145  OS Caenorhabditis latens
#=GS A0A261CDJ6/4-145  DE Uncharacterized protein
#=GS A0A261CDJ6/4-145  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GF SQ 10
A5Z2V0/4-145              LTSDVVYSRLQD--VKNPTQEAIETMSMWIMHYKDNASIDLIVDGWLNCFKTAGTDNKRIALFYVMNDVVQKAKMKHADTLIPAFQPAVLTAVGIGRKQDKVKAVMKRCIQIFKSRNVFSPASTTAMENLL---ASDADEGYEAEDQ----
Q9XVN9/4-145              LTSDVVYSRLQD--VKNPTQEAIETMSMWIMHYKDNASIDLIVDGWLNCFKTAGTDNKRIALFYVMNDVVQKAKMKHADTLIPAFQPAVLTAVGIGRKQDKVKAVMKRCIQIFKSRNVFSPASTTAMENLL-------DEGYEAEDQALEV
Q8I4J5/4-143              LTSDVVYSRLQD--VKNPTQEAIETMSMWIMHYKDNASIDLIVDGWLNCFKTAGTDNKRIALFYVMNDVVQKAKMKHADTLIPAFQPAVLTAVGIGRKQDKVKAVMKRCIQIFKSRNVFSPASTTAMENLL---------GYEAEDQALEV
A5Z2V1/5-147              -TSDVVYSRLQDFQVKNPTQEAIETMSMWIMHYKDNASIDLIVDGWLNCFKTAGTDNKRIALFYVMNDVVQKAKMKHADTLIPAFQPAVLTAVGIGRKQDKVKAVMKRCIQIFKSRNVFSPASTTAMENLL---ASDADEGYEAEDQ----
G0NXU8/4-145              LTSDVVYNRLQD--VKNPTQEAIETMSLWIMHYKDKASIDLIVDGWLNCFKTAGTDNKRIALFYVMNDVVQKAKMKHADTIIPAFQPAVLTAVGIGRKQETVKKVMKRCIQIFKSRNVFSTASTTAMENLL-------DEGYEAEDQALEV
A0A261CEV9/4-144          LTSDVVYNRLQD--IKNPTQEAIETMSLWIMHYKDKASIDLIVDGWLNCFKTAGTDSKRIALFYVMNDVVQKAKMKHADTIIPAFQPAVLTAVGIGRKQEKVKGVMKRCIQIFKSRNVFSTASTTAMENLL-------DEGYDAEDQALE-
A0A2G5VJE4/4-145          LTADVVYNRLQD--IKNPTQEAIETMSLWIMHYKDKASIDLIVDGWLNCFKTAGTDSKRIALFYVMNDVVQKAKIKHADTIIPAFQPAVLTAVATGRKQDKVKDVMKRCIQIFKTRGVFSSQSTTAMENLL-------DEGYDAEDQALEV
A8XF99/4-143              LTADVVYNRLQD--IKNPTQEAIETMSLWIMHYKDKASIDLIVDGWLNCFKTAGTDSKRIALFYVMNDVVQKAKIKHADTIIPAFQPAVLTAVATGRKQDKVKDVMKRCIQIFKTRGVFSSQSTTAMENLLAQLASDADEGY---------
E3LVM3/4-144              LTSDVVYNRLQD--IKNPTQEAIETMSLWIMHYKDKASIDLIVDGWLNCFKTAGTDSKRIALFYVMNDVVQKAKMKHADTIIPAFQPAVLTAVGIGRKQEKVKGVMKRCIQIFKSRNVFSTASTTAMENLL-------DEGYDAEDQALE-
A0A261CDJ6/4-145          LTSDVVYNRLQD--IKNPTQEAIETMSLWIMHYKDKASIDLIVDGWLNCFKTAGTDSKRIALFYVMNDVVQKAKMKHADTIIPAFQPAVLTAVGIGRKQEKVKGVMKRCIQIFKSRNVFSTASTTAMENLL---DANTDEGYDAEDQ----
#=GC scorecons            6969999699990069999999999996999999969999999999999999999959999999999999999979999969999999999996699997799499999999996969995699999999900011117799466662221
#=GC scorecons_70         *******_****__*********************_********************_**********************************************_****************__*********_______****_________
#=GC scorecons_80         _*_****_****___************_*******_********************_*****************_*****_************__********_**********_*_***__*********_______****_________
#=GC scorecons_90         _*_****_****___************_*******_********************_*****************_*****_************__****__**_**********_*_***__*********_________**_________
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