# STOCKHOLM 1.0
#=GF ID 1.20.1640.10/FF/000035
#=GF DE PaTched Related family
#=GF AC 1.20.1640.10/FF/000035
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 77.066
#=GS Q20404/671-778_813-881      AC Q20404
#=GS Q20404/671-778_813-881      OS Caenorhabditis elegans
#=GS Q20404/671-778_813-881      DE PaTched Related family
#=GS Q20404/671-778_813-881      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q20404/671-778_813-881      DR GO; GO:0018996; 
#=GS O44978/624-799              AC O44978
#=GS O44978/624-799              OS Caenorhabditis elegans
#=GS O44978/624-799              DE PaTched Related family
#=GS O44978/624-799              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS O44978/624-799              DR GO; GO:0018996; 
#=GS Q09934/632-831              AC Q09934
#=GS Q09934/632-831              OS Caenorhabditis elegans
#=GS Q09934/632-831              DE PaTched Related family
#=GS Q09934/632-831              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q09934/632-831              DR GO; GO:0018996; 
#=GS V6CLI4/472-648              AC V6CLI4
#=GS V6CLI4/472-648              OS Caenorhabditis elegans
#=GS V6CLI4/472-648              DE PaTched Related family
#=GS V6CLI4/472-648              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A8XYA2/680-792_826-894      AC A8XYA2
#=GS A8XYA2/680-792_826-894      OS Caenorhabditis briggsae
#=GS A8XYA2/680-792_826-894      DE Protein CBR-PTR-8
#=GS A8XYA2/680-792_826-894      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A1I7TSA9/669-777_810-879  AC A0A1I7TSA9
#=GS A0A1I7TSA9/669-777_810-879  OS Caenorhabditis tropicalis
#=GS A0A1I7TSA9/669-777_810-879  DE Uncharacterized protein
#=GS A0A1I7TSA9/669-777_810-879  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3M446/685-796_828-896      AC E3M446
#=GS E3M446/685-796_828-896      OS Caenorhabditis remanei
#=GS E3M446/685-796_828-896      DE CRE-PTR-8 protein
#=GS E3M446/685-796_828-896      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A2G5V5U7/665-777_812-880  AC A0A2G5V5U7
#=GS A0A2G5V5U7/665-777_812-880  OS Caenorhabditis nigoni
#=GS A0A2G5V5U7/665-777_812-880  DE Uncharacterized protein
#=GS A0A2G5V5U7/665-777_812-880  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A261CCR6/666-777_809-877  AC A0A261CCR6
#=GS A0A261CCR6/666-777_809-877  OS Caenorhabditis latens
#=GS A0A261CCR6/666-777_809-877  DE Uncharacterized protein
#=GS A0A261CCR6/666-777_809-877  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A2H2I8K0/622-798          AC A0A2H2I8K0
#=GS A0A2H2I8K0/622-798          OS Caenorhabditis japonica
#=GS A0A2H2I8K0/622-798          DE Uncharacterized protein
#=GS A0A2H2I8K0/622-798          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS G0MVD9/633-832              AC G0MVD9
#=GS G0MVD9/633-832              OS Caenorhabditis brenneri
#=GS G0MVD9/633-832              DE CBN-PTR-13 protein
#=GS G0MVD9/633-832              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A1I7TSB0/627-735_768-837  AC A0A1I7TSB0
#=GS A0A1I7TSB0/627-735_768-837  OS Caenorhabditis tropicalis
#=GS A0A1I7TSB0/627-735_768-837  DE Uncharacterized protein
#=GS A0A1I7TSB0/627-735_768-837  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A2G5V6H4/664-776_811-879  AC A0A2G5V6H4
#=GS A0A2G5V6H4/664-776_811-879  OS Caenorhabditis nigoni
#=GS A0A2G5V6H4/664-776_811-879  DE Uncharacterized protein
#=GS A0A2G5V6H4/664-776_811-879  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8WZ88/689-742_794-911      AC A8WZ88
#=GS A8WZ88/689-742_794-911      OS Caenorhabditis briggsae
#=GS A8WZ88/689-742_794-911      DE Protein CBR-PTR-11
#=GS A8WZ88/689-742_794-911      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5V2M0/614-809          AC A0A2G5V2M0
#=GS A0A2G5V2M0/614-809          OS Caenorhabditis nigoni
#=GS A0A2G5V2M0/614-809          DE Uncharacterized protein
#=GS A0A2G5V2M0/614-809          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A1I7U9U1/612-809          AC A0A1I7U9U1
#=GS A0A1I7U9U1/612-809          OS Caenorhabditis tropicalis
#=GS A0A1I7U9U1/612-809          DE Uncharacterized protein
#=GS A0A1I7U9U1/612-809          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A8WT48/636-831              AC A8WT48
#=GS A8WT48/636-831              OS Caenorhabditis briggsae
#=GS A8WT48/636-831              DE Protein CBR-PTR-13
#=GS A8WT48/636-831              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS E3LFD9/633-827              AC E3LFD9
#=GS E3LFD9/633-827              OS Caenorhabditis remanei
#=GS E3LFD9/633-827              DE CRE-PTR-13 protein
#=GS E3LFD9/633-827              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A2G5V2X9/624-819          AC A0A2G5V2X9
#=GS A0A2G5V2X9/624-819          OS Caenorhabditis nigoni
#=GS A0A2G5V2X9/624-819          DE Uncharacterized protein
#=GS A0A2G5V2X9/624-819          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS H2VVX4/627-819              AC H2VVX4
#=GS H2VVX4/627-819              OS Caenorhabditis japonica
#=GS H2VVX4/627-819              DE Uncharacterized protein
#=GS H2VVX4/627-819              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A2G5V2F4/637-832          AC A0A2G5V2F4
#=GS A0A2G5V2F4/637-832          OS Caenorhabditis nigoni
#=GS A0A2G5V2F4/637-832          DE Uncharacterized protein
#=GS A0A2G5V2F4/637-832          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 21
Q20404/671-778_813-881              ---------------------VFTEDAFFLDMIDSIPTVTWQTTLATFIFVSLVCFLFISDILTVMIVSVATLVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKKHASSHSNLNFALSSVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIVIPALLSV------QHHIVH
O44978/624-799                      -----------------------DCDSAILSIILTVGTDLIGSIAVTVVCMAIVCFVFIANFNAVAVITSVIASICYVLVGGLSLWGADLDPVIQVDVLLATGFSVDYTAHVAYNFFRAR----GTPQERVYSSLAEMAMPMCEAGLSTFLCMLPLIFVPTYAIVCFAKTVFLVVAIGLLHGLFILPVILALFSKDSINEKDN-
Q09934/632-831                      RAVNVEKTRQILVDYSDYNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREQHLGSKHEVITSVLQAVGRPVVEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTSFGLLHGLFFLPVVLYFIPLNAQKH----
V6CLI4/472-648                      ----------------------FDCDSAILSIILTVGTDLIGSIAVTVVCMAIVCFVFIANFNAVAVITSVIASICYVLVGGLSLWGADLDPVIQVDVLLATGFSVDYTAHVAYNFFRAR----GTPQERVYSSLAEMAMPMCEAGLSTFLCMLPLIFVPTYAIVCFAKTVFLVVAIGLLHGLFILPVILALFSKDSINEKDN-
A8XYA2/680-792_826-894              ---------------KDFNATVFTEDAFFLDMIDSIPTVTWQTTLATFVFVSLVCFLFISDILTVIIVSVATLVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKKHASSHTNLTFALASVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIVIPALLSV------QHHIV-
A0A1I7TSA9/669-777_810-879          -------------------ATVFTEDAFFLDMIDSIPTITWQTTLATFIFVSLVCFLFISDILTVLIVSVAILVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKSHASSHTNLKFALASVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIIIPALLSV------QHHLVH
E3M446/685-796_828-896              ----------------DFNATVFSEDAFFLDMIDSIPTVTWQTTLATFIFVSLVCFLFISDILTVIIVSIATLVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKKPSSSQTNLTFALASVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIIIPALLSV------QHHIL-
A0A2G5V5U7/665-777_812-880          ---------------KDFNATVFTEDAFFLDMIDSIPTVTWQTTLATFVFVSLVCFLFISDILTVIIVSVATLVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKKRASSHTNLTFALASVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIVIPALLSV------QHHIV-
A0A261CCR6/666-777_809-877          ----------------DFNATVFSEDAFFLDMIDSIPTVTWQTTLATFIFVSLVCFLFISDIMTVIIVSIATLVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKKHASSQTNLTFALASVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIIIPALLSV------QHHII-
A0A2H2I8K0/622-798                  -----------------------DCDSAILSIILTVGTDLIGSIAVTVVCMAIVCFVFIANFNAVALITSVIASICFVLVGGLSLWGADLDPVIQVDVLLATGFSVDYTAHVAYNYFRAR----GTAHERVYSSLAEMAMPMLEAGLSTFLCMLPLIFVPTYAIVCFAKTVFLVVAIGLLHGLFILPVVLALFSKDPIEEKEAV
G0MVD9/633-832                      -AVNVEKTRQILVDYPQFNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREQDLGSKQEVITRVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTTFGLLHGLFFLPVVLYFIPLNKPKHS---
A0A1I7TSB0/627-735_768-837          -------------------ATVFTEDAFFLDMIDSIPTITWQTTLATFIFVSLVCFLFISDILTVLIVSVAILVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKSHASSHTNLKFALASVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIIIPALLSV------QHHLVH
A0A2G5V6H4/664-776_811-879          ---------------KDFNATVFTEDAFFLDMIDSIPTVTWQTTLATFVFVSLVCFLFISDILTVIIVSVATLVTSVGVFGYLSLLGVTLDPVIMSIAIMCIGFSVDIPAHVAFHFYAAKAKKRASSHTNLTFALASVGFPVIQAGVSTDFCALPLGFMELYMAKMFALSLTLCVSLSLIHGLIVIPALLSV------QHHIV-
A8WZ88/689-742_794-911              ---------------------------AILSIILTVGTDLIGSIAVTVVCMAIVCFVFIANFNAVAVITSIIASICYAGRFGLSLWGADLDPVIQVDVLLATGFSVDYTAHVAYNYFRAR----GSPQERVYSSLAEMAMPMCEAGLSTFLCMLPLIFVPTYAIVCFAKTVFLVVAIGLLHGLFILPVVLALFSRNSIDEKDT-
A0A2G5V2M0/614-809                  ---NVEKTRQILVDYPQYNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREHNLGSKQEVITQVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTTFGLLHGLFFLPVVLYFIPLNTPK-----
A0A1I7U9U1/612-809                  --VNVEKTRQILVDYPQFNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREEDLGSKQEVITRVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTSFGLLHGLFFLPVVLYFIPLNTSKH----
A8WT48/636-831                      ---NVEKTRQILVDYPQYNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREQNLGSKQEVITQVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTTFGLLHGLFFLPVVLYFIPLNTPK-----
E3LFD9/633-827                      ----VEKTRQILVDFPQYNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCARQQDLGSKQQVITRVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTTFGLLHGLFFLPVVLYFIPLNTPK-----
A0A2G5V2X9/624-819                  ---NVEKTRQILVDYPQYNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREHNLGSKQEVITQVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTTFGLLHGLFFLPVVLYFIPLNTPK-----
H2VVX4/627-819                      ---NVEKTRQILADFPQYNITLFDYDGTVYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASIATVSISFFLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCARKQELYSKNEMITRVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIRSFAKTVTLVTTFGLLHGLFFLPVVLYFIPLD--------
A0A2G5V2F4/637-832                  ---NVEKTRQILVDYPQYNITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVIMPSFVAPTIASVATVSISFCLIGFLSIWGQNLDPVTMIDVIMAIGFSVDYSAHVCYHYYCAREHNLGSKQEVITQVLQAVGRPVIEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVTTFGLLHGLFFLPVVLYFIPLNTPK-----
#=GC scorecons                      000011111111111122324364374455669467464545655596566566996665564654756566556653547499659459999665567756999995599957677497232257465454359547639766966693695599366559664499566695655696999656966945221211432110
#=GC scorecons_70                   _________________________*____*_*_**______*___**__*_*****_*____*__*_*_**__**____*_***_*__******__***_******__***_****_**_____*_*______*__**_**_******_**__**__*__**___**_****____******__***_*______________
#=GC scorecons_80                   _________________________*______*__*__________*_______**__________*_____________*_**__*__****_____**__*****__***_*_**_**_____*________*__*__**__*___*__*__**_____*____**____*_____*_***___*__*______________
#=GC scorecons_90                   ________________________________*_____________*_______**__________________________**__*__****_________*****__***______*_______________*_____*___*___*__*__**_____*____**____*_____*_***___*__*______________
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