# STOCKHOLM 1.0
#=GF ID 1.20.1310.20/FF/000017
#=GF DE Erythrocyte membrane protein 1, PfEMP1
#=GF AC 1.20.1310.20/FF/000017
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 74.648
#=GS Q8IIZ4/1220-1312_1344-1442      AC Q8IIZ4
#=GS Q8IIZ4/1220-1312_1344-1442      OS Plasmodium falciparum 3D7
#=GS Q8IIZ4/1220-1312_1344-1442      DE Erythrocyte membrane protein 1, PfEMP1
#=GS Q8IIZ4/1220-1312_1344-1442      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q8IIZ4/1220-1312_1344-1442      DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0046789; GO:0050839; GO:0098609; 
#=GS C6KTF7/1706-1932                AC C6KTF7
#=GS C6KTF7/1706-1932                OS Plasmodium falciparum 3D7
#=GS C6KTF7/1706-1932                DE Erythrocyte membrane protein 1, PfEMP1
#=GS C6KTF7/1706-1932                DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS C6KTF7/1706-1932                DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0050839; GO:0098609; 
#=GS Q8IHM0/1874-1983_2016-2112      AC Q8IHM0
#=GS Q8IHM0/1874-1983_2016-2112      OS Plasmodium falciparum 3D7
#=GS Q8IHM0/1874-1983_2016-2112      DE Erythrocyte membrane protein 1, PfEMP1
#=GS Q8IHM0/1874-1983_2016-2112      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q8IHM0/1874-1983_2016-2112      DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0046789; GO:0050839; GO:0098609; 
#=GS Q8IEU9/1579-1791                AC Q8IEU9
#=GS Q8IEU9/1579-1791                OS Plasmodium falciparum 3D7
#=GS Q8IEU9/1579-1791                DE Erythrocyte membrane protein 1, PfEMP1
#=GS Q8IEU9/1579-1791                DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q8IEU9/1579-1791                DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0050839; GO:0098609; 
#=GS A0A2I0BPK7/1706-1932            AC A0A2I0BPK7
#=GS A0A2I0BPK7/1706-1932            OS Plasmodium falciparum NF54
#=GS A0A2I0BPK7/1706-1932            DE Erythrocyte membrane protein 1
#=GS A0A2I0BPK7/1706-1932            DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7JX21/1706-1932                AC W7JX21
#=GS W7JX21/1706-1932                OS Plasmodium falciparum NF54
#=GS W7JX21/1706-1932                DE Uncharacterized protein
#=GS W7JX21/1706-1932                DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A2I0BW14/1579-1791            AC A0A2I0BW14
#=GS A0A2I0BW14/1579-1791            OS Plasmodium falciparum NF54
#=GS A0A2I0BW14/1579-1791            DE Erythrocyte membrane protein 1
#=GS A0A2I0BW14/1579-1791            DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7JQ64/1579-1791                AC W7JQ64
#=GS W7JQ64/1579-1791                OS Plasmodium falciparum NF54
#=GS W7JQ64/1579-1791                DE Uncharacterized protein
#=GS W7JQ64/1579-1791                DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A2I0C0Q5/1220-1312_1344-1442  AC A0A2I0C0Q5
#=GS A0A2I0C0Q5/1220-1312_1344-1442  OS Plasmodium falciparum NF54
#=GS A0A2I0C0Q5/1220-1312_1344-1442  DE Erythrocyte membrane protein 1
#=GS A0A2I0C0Q5/1220-1312_1344-1442  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7JU12/1220-1312_1344-1442      AC W7JU12
#=GS W7JU12/1220-1312_1344-1442      OS Plasmodium falciparum NF54
#=GS W7JU12/1220-1312_1344-1442      DE Uncharacterized protein
#=GS W7JU12/1220-1312_1344-1442      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7K2Y7/1884-1993_2026-2122      AC W7K2Y7
#=GS W7K2Y7/1884-1993_2026-2122      OS Plasmodium falciparum NF54
#=GS W7K2Y7/1884-1993_2026-2122      DE Uncharacterized protein
#=GS W7K2Y7/1884-1993_2026-2122      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GF SQ 11
Q8IIZ4/1220-1312_1344-1442              -TLGDKTSKSYAEGCKWKYGKMPL-GLGWLCNDKE-----------------GEKGKEDG--LCIPPRRKRLYVKDLETF-S-DHTTVGLREAFIKCAAVETFFAWHEFTKEKERER----------------------------KNGEIHEEFKSQMFYTLADYRDILFGNNIGIGNDMGKVKSNIDKVFANSSGKTPTAKKTTPKEWWEKNAKDIWEGMLCALSYDTKTKIKNEELRKKLI---
C6KTF7/1706-1932                        -------DNKFTEACSTKYKNGKEKYTQWKCINDSSNTTRSSPPAPVASSTLSTSPEAGASATCIPPRRQQMYIQPLQSL-SGNESQVELRRIFIEMAAIETFFQWHKFKKEKVREIKEKDEIDGKISLFGQDDTSIEENLQKQLKNGTIPDDFKRQMFYTFGDYKDILFGKY--IGIDMGTVKTNIGRVFNNGGNKSD--EER--EKWWKNHGPSIWNGMLCGLSYDTKTKHN---IQGVYTQ--
Q8IHM0/1874-1983_2016-2112              ATLF-NDTNKFKDACTLKYG--PKAPTSWKCVPTTSG---GSGVTTTAGSSVTTTPPSNSGAICVPPRRRRLYVKDLEKIGDGEVTQVQLRDAFIKCAAIETFFSWHKFKKDKE----------------------------KKLKRGKIPDDFLHQMFYTFGDYKDILFGKD--MGNDVGDVENNINKILPNNSAKSANGHSR--QEWWKKYAEDIWKGMVCALSHSVSASDKDS-MQKNLTDKY
Q8IEU9/1579-1791                        --LSPQNSSSYAEGCKWKYGKMSQGGTEWDCSKKSG----------------GEGGNEDGDVVCIPPRRRRLYVKNLQDL-TGEESLVDLRKAFIKCAAIETFFAWHEFKKEKEREEKEKNEQD------VQYKSSVLENLQKQLKNGEIDDEFKRQMFYTFADYRDICLGKD--IGNDVDGINEKIDTILQKN-GKPNNIEEY--KKWWQKHGHEIWEGMLCALSYNTETKEMDKELRNKLT---
A0A2I0BPK7/1706-1932                    -------DNKFTEACSTKYKNGKEKYTQWKCINDSSNTTRSSPPAPVASSTLSTSPEAGASATCIPPRRQQMYIQPLQSL-SGNESQVELRRIFIEMAAIETFFQWHKFKKEKVREIKEKDEIDGKISLFGQDDTSIEENLQKQLKNGTIPDDFKRQMFYTFGDYKDILFGKY--IGIDMGTVKTNIGRVFNNGGNKSD--EER--EKWWKNHGPSIWNGMLCGLSYDTKTKHN---IQGVYTQ--
W7JX21/1706-1932                        -------DNKFTEACSTKYKNGKEKYTQWKCINDSSNTTRSSPPAPVASSTLSTSPEAGASATCIPPRRQQMYIQPLQSL-SGNESQVELRRIFIEMAAIETFFQWHKFKKEKVREIKEKDEIDGKISLFGQDDTSIEENLQKQLKNGTIPDDFKRQMFYTFGDYKDILFGKY--IGIDMGTVKTNIGRVFNNGGNKSD--EER--EKWWKNHGPSIWNGMLCGLSYDTKTKHN---IQGVYTQ--
A0A2I0BW14/1579-1791                    --LSPQNSSSYAEGCKWKYGKMSQGGTEWDCSKKSG----------------GEGGNEDGDVVCIPPRRRRLYVKNLQDL-TGEESLVDLRKAFIKCAAIETFFAWHEFKKEKEREEKEKNEQD------VQYKSSVLENLQKQLKNGEIDDEFKRQMFYTFADYRDICLGKD--IGNDVDGINEKIDTILQKN-GKPNNIEEY--KKWWQKHGHEIWEGMLCALSYNTETKEMDKELRNKLT---
W7JQ64/1579-1791                        --LSPQNSSSYAEGCKWKYGKMSQGGTEWDCSKKSG----------------GEGGNEDGDVVCIPPRRRRLYVKNLQDL-TGEESLVDLRKAFIKCAAIETFFAWHEFKKEKEREEKEKNEQD------VQYKSSVLENLQKQLKNGEIDDEFKRQMFYTFADYRDICLGKD--IGNDVDGINEKIDTILQKN-GKPNNIEEY--KKWWQKHGHEIWEGMLCALSYNTETKEMDKELRNKLT---
A0A2I0C0Q5/1220-1312_1344-1442          -TLGDKTSKSYAEGCKWKYGKMPL-GLGWLCNDKE-----------------GEKGKEDG--LCIPPRRKRLYVKDLETF-S-DHTTVGLREAFIKCAAVETFFAWHEFTKEKERER----------------------------KNGEIHEEFKSQMFYTLADYRDILFGNNIGIGNDMGKVKSNIDKVFANSSGKTPTAKKTTPKEWWEKNAKDIWEGMLCALSYDTKTKIKNEELRKKLI---
W7JU12/1220-1312_1344-1442              -TLGDKTSKSYAEGCKWKYGKMPL-GLGWLCNDKE-----------------GEKGKEDG--LCIPPRRKRLYVKDLETF-S-DHTTVGLREAFIKCAAVETFFAWHEFTKEKERER----------------------------KNGEIHEEFKSQMFYTLADYRDILFGNNIGIGNDMGKVKSNIDKVFANSSGKTPTAKKTTPKEWWEKNAKDIWEGMLCALSYDTKTKIKNEELRKKLI---
W7K2Y7/1884-1993_2026-2122              ATLF-NDTNKFKDACTLKYG--PKAPTSWKCVPTTSG---GSGVTTTAGSSVTTTPPSNSGAICVPPRRRRLYVKDLEKIGDGEVTQVQLRDAFIKCAAIETFFSWHKFKKDKE----------------------------KKLKRGKIPDDFLHQMFYTFGDYKDILFGKD--MGNDVGDVENNINKILPNNSAKSANGHSR--QEWWKKYAEDIWKGMVCALSHSVSASDKDS-MQKNLTDKY
#=GC scorecons                          014112245575769439963343236493934443100011111111111155353455234979999567976496350545464949946996599799994996969795552222121200000012111211222243496949477965999996699799579640079596637546955763643595332544005699565635995997969975657634322564466100
#=GC scorecons_70                       __________*_*_*__**_________*_*________________________________******_*****_**_________*_**_****_*******_**_*_***________________________________***_*_***__******_*****_***___**_***_*__**__**_*___*___________**_*____**_********_*_**______*___*___
#=GC scorecons_80                       __________*_*_*__**_________*_*________________________________******___**__*__________*_**__**__*******_**_*_***________________________________*_*_*_*_*__*****__**_**__*____**_*___*___*_________*___________**______**_****_***___*_______________
#=GC scorecons_90                       ______________*__**_________*_*________________________________*_****___*___*__________*_**__**__**_****_**_*_*_*________________________________*_*_*___*__*****__**_**__*_____*_*_______*_________*___________**______**_**_*_**____________________
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