# STOCKHOLM 1.0
#=GF ID 1.20.1280.50/FF/000059
#=GF DE Partner of Paired
#=GF AC 1.20.1280.50/FF/000059
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 77.186
#=GS Q9W214/143-192      AC Q9W214
#=GS Q9W214/143-192      OS Drosophila melanogaster
#=GS Q9W214/143-192      DE Partner of Paired
#=GS Q9W214/143-192      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9W214/143-192      DR GO; GO:0019005; GO:0031146; 
#=GS A0A0B4KF28/143-192  AC A0A0B4KF28
#=GS A0A0B4KF28/143-192  OS Drosophila melanogaster
#=GS A0A0B4KF28/143-192  DE Partner of paired, isoform B
#=GS A0A0B4KF28/143-192  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS A0A0B4KF28/143-192  DR GO; GO:0019005; GO:0031146; 
#=GS Q7PLZ3/72-111       AC Q7PLZ3
#=GS Q7PLZ3/72-111       OS Anopheles gambiae
#=GS Q7PLZ3/72-111       DE AGAP010289-PA
#=GS Q7PLZ3/72-111       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS T1FY42/37-76        AC T1FY42
#=GS T1FY42/37-76        OS Helobdella robusta
#=GS T1FY42/37-76        DE Uncharacterized protein
#=GS T1FY42/37-76        DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS A7SCB1/10-49        AC A7SCB1
#=GS A7SCB1/10-49        OS Nematostella vectensis
#=GS A7SCB1/10-49        DE Predicted protein
#=GS A7SCB1/10-49        DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS E9HP54/2-52         AC E9HP54
#=GS E9HP54/2-52         OS Daphnia pulex
#=GS E9HP54/2-52         DE Uncharacterized protein
#=GS E9HP54/2-52         DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS W4YSL8/141-191      AC W4YSL8
#=GS W4YSL8/141-191      OS Strongylocentrotus purpuratus
#=GS W4YSL8/141-191      DE Uncharacterized protein
#=GS W4YSL8/141-191      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS C3Z2P1/1-49         AC C3Z2P1
#=GS C3Z2P1/1-49         OS Branchiostoma floridae
#=GS C3Z2P1/1-49         DE Uncharacterized protein
#=GS C3Z2P1/1-49         DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS B4KP95/150-199      AC B4KP95
#=GS B4KP95/150-199      OS Drosophila mojavensis
#=GS B4KP95/150-199      DE Uncharacterized protein
#=GS B4KP95/150-199      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; repleta group; mulleri subgroup; Drosophila mojavensis; 
#=GS A0A0M4EW72/133-182  AC A0A0M4EW72
#=GS A0A0M4EW72/133-182  OS Drosophila busckii
#=GS A0A0M4EW72/133-182  DE Ppa
#=GS A0A0M4EW72/133-182  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Dorsilopha; Drosophila busckii; 
#=GS B3MIW7/149-198      AC B3MIW7
#=GS B3MIW7/149-198      OS Drosophila ananassae
#=GS B3MIW7/149-198      DE Uncharacterized protein
#=GS B3MIW7/149-198      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS B4MQC2/148-197      AC B4MQC2
#=GS B4MQC2/148-197      OS Drosophila willistoni
#=GS B4MQC2/148-197      DE GK21848
#=GS B4MQC2/148-197      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; willistoni group; willistoni subgroup; Drosophila willistoni; 
#=GS Q291P6/134-183      AC Q291P6
#=GS Q291P6/134-183      OS Drosophila pseudoobscura pseudoobscura
#=GS Q291P6/134-183      DE Uncharacterized protein
#=GS Q291P6/134-183      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS B3NNM4/143-192      AC B3NNM4
#=GS B3NNM4/143-192      OS Drosophila erecta
#=GS B3NNM4/143-192      DE Uncharacterized protein
#=GS B3NNM4/143-192      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS A0A3B0JJS0/134-183  AC A0A3B0JJS0
#=GS A0A3B0JJS0/134-183  OS Drosophila guanche
#=GS A0A3B0JJS0/134-183  DE Blast:F-box/LRR-repeat protein 14
#=GS A0A3B0JJS0/134-183  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS B4GAF9/134-183      AC B4GAF9
#=GS B4GAF9/134-183      OS Drosophila persimilis
#=GS B4GAF9/134-183      DE GL10712
#=GS B4GAF9/134-183      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; 
#=GS B4LIS9/154-203      AC B4LIS9
#=GS B4LIS9/154-203      OS Drosophila virilis
#=GS B4LIS9/154-203      DE Uncharacterized protein
#=GS B4LIS9/154-203      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Drosophila; virilis group; Drosophila virilis; 
#=GS B4I893/143-192      AC B4I893
#=GS B4I893/143-192      OS Drosophila sechellia
#=GS B4I893/143-192      DE GM15616
#=GS B4I893/143-192      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS A0A0J9RJ43/143-192  AC A0A0J9RJ43
#=GS A0A0J9RJ43/143-192  OS Drosophila simulans
#=GS A0A0J9RJ43/143-192  DE Uncharacterized protein
#=GS A0A0J9RJ43/143-192  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GF SQ 19
Q9W214/143-192              -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
A0A0B4KF28/143-192          -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
Q7PLZ3/72-111               --------GHLYPEILAMIFAKLNVKDRGRAAQVCTVWRDAAYAKSCW---
T1FY42/37-76                --------SCLFPELLTLIFSFLDLSDKGKVGQVCTSWRDAAYNKQVW---
A7SCB1/10-49                --------HCLFPEILALIFAYLSVRDKGRVAQVCTKWRDAAYSRIVW---
E9HP54/2-52                 EATELTHISRLYPEILAIIFGMLEVRDRGRAAQVCQTWKEAAYHRSVWRSC
W4YSL8/141-191              KYQEETHISCLFPEVLALIFGYLDVRDKGRAAQVCRAWRDASYHRSVWRGV
C3Z2P1/1-49                 --MDEITISCLFPEILAMIFSHLDVRDRGRAAQVCRRWRDAAYSRSVWRGV
B4KP95/150-199              -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
A0A0M4EW72/133-182          -PVEGTHISQLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
B3MIW7/149-198              -PAEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
B4MQC2/148-197              -PIEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
Q291P6/134-183              -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCSAWRDAAYAKSVWKGV
B3NNM4/143-192              -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
A0A3B0JJS0/134-183          -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCSAWRDAAYAKSVWKGV
B4GAF9/134-183              -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCSAWRDAAYAKSVWKGV
B4LIS9/154-203              -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
B4I893/143-192              -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
A0A0J9RJ43/143-192          -PVEGTHISNLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGV
#=GC scorecons              022323346497996944994494769498679995498898947679333
#=GC scorecons_70           ________*_****_*__**__*_***_*******__******_****___
#=GC scorecons_80           __________****_*__**__*_*_*_**_****__******_*_**___
#=GC scorecons_90           __________*_**_*__**__*___*_**__***__******____*___
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