# STOCKHOLM 1.0
#=GF ID 1.20.120.1810/FF/000006
#=GF DE RNA polymerase sigma factor RpoH
#=GF AC 1.20.120.1810/FF/000006
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 49.602
#=GS P50511/45-122      AC P50511
#=GS P50511/45-122      OS Vibrio cholerae O1 biovar El Tor str. N16961
#=GS P50511/45-122      DE RNA polymerase sigma factor RpoH
#=GS P50511/45-122      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS P50511/45-122      DR GO; GO:0006352; 
#=GS H7C6K8/18-120      AC H7C6K8
#=GS H7C6K8/18-120      OS Bradyrhizobium diazoefficiens USDA 110
#=GS H7C6K8/18-120      DE RNA polymerase sigma factor RpoH
#=GS H7C6K8/18-120      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS A0A348WQC4/47-124  AC A0A348WQC4
#=GS A0A348WQC4/47-124  OS Idiomarina baltica
#=GS A0A348WQC4/47-124  DE RNA polymerase sigma factor RpoH
#=GS A0A348WQC4/47-124  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina; Idiomarina baltica; 
#=GS A0A1H5DIP1/16-119  AC A0A1H5DIP1
#=GS A0A1H5DIP1/16-119  OS Rhizobiales bacterium GAS191
#=GS A0A1H5DIP1/16-119  DE RNA polymerase sigma factor RpoH
#=GS A0A1H5DIP1/16-119  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiales bacterium GAS191; 
#=GS A0A1T4UH74/45-120  AC A0A1T4UH74
#=GS A0A1T4UH74/45-120  OS Enterovibrio nigricans DSM 22720
#=GS A0A1T4UH74/45-120  DE RNA polymerase sigma factor RpoH
#=GS A0A1T4UH74/45-120  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Enterovibrio; Enterovibrio nigricans; 
#=GS A0A377HI96/44-122  AC A0A377HI96
#=GS A0A377HI96/44-122  OS Grimontia hollisae
#=GS A0A377HI96/44-122  DE RNA polymerase sigma factor RpoH
#=GS A0A377HI96/44-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia; Grimontia hollisae; 
#=GS A0A2E6UAJ5/47-124  AC A0A2E6UAJ5
#=GS A0A2E6UAJ5/47-124  OS Idiomarinaceae bacterium
#=GS A0A2E6UAJ5/47-124  DE RNA polymerase sigma factor RpoH
#=GS A0A2E6UAJ5/47-124  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarinaceae bacterium; 
#=GS A0A0F5APC4/45-122  AC A0A0F5APC4
#=GS A0A0F5APC4/45-122  OS Salinivibrio sp. KP-1
#=GS A0A0F5APC4/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A0F5APC4/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Salinivibrio; Salinivibrio sp. KP-1; 
#=GS P94330/18-120      AC P94330
#=GS P94330/18-120      OS Bradyrhizobium japonicum
#=GS P94330/18-120      DE RNA polymerase sigma factor RpoH
#=GS P94330/18-120      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium japonicum; 
#=GS A0A366A5X0/45-122  AC A0A366A5X0
#=GS A0A366A5X0/45-122  OS Vibrio sp. 2017V-1124
#=GS A0A366A5X0/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A366A5X0/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. 2017V-1124; 
#=GS D0IMJ0/45-122      AC D0IMJ0
#=GS D0IMJ0/45-122      OS Vibrio sp. RC586
#=GS D0IMJ0/45-122      DE RNA polymerase sigma factor RpoH
#=GS D0IMJ0/45-122      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. RC586; 
#=GS A0A139C1D4/47-124  AC A0A139C1D4
#=GS A0A139C1D4/47-124  OS Idiomarina sp. T82-3
#=GS A0A139C1D4/47-124  DE RNA polymerase sigma factor RpoH
#=GS A0A139C1D4/47-124  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina; Idiomarina sp. T82-3; 
#=GS A0A2E8QDV3/47-124  AC A0A2E8QDV3
#=GS A0A2E8QDV3/47-124  OS Idiomarina sp.
#=GS A0A2E8QDV3/47-124  DE RNA polymerase sigma factor RpoH
#=GS A0A2E8QDV3/47-124  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina; Idiomarina sp.; 
#=GS U3C8B5/39-115      AC U3C8B5
#=GS U3C8B5/39-115      OS Vibrio azureus NBRC 104587
#=GS U3C8B5/39-115      DE RNA polymerase sigma factor RpoH
#=GS U3C8B5/39-115      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio azureus; 
#=GS A0A1V3GS42/45-122  AC A0A1V3GS42
#=GS A0A1V3GS42/45-122  OS Salinivibrio sp. ML290
#=GS A0A1V3GS42/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A1V3GS42/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Salinivibrio; Salinivibrio sp. ML290; 
#=GS A0A3N9TBK2/44-120  AC A0A3N9TBK2
#=GS A0A3N9TBK2/44-120  OS Vibrio sp. LJC006
#=GS A0A3N9TBK2/44-120  DE RNA polymerase sigma factor RpoH
#=GS A0A3N9TBK2/44-120  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. LJC006; 
#=GS A0A1I5UQW6/45-120  AC A0A1I5UQW6
#=GS A0A1I5UQW6/45-120  OS Enterovibrio norvegicus DSM 15893
#=GS A0A1I5UQW6/45-120  DE RNA polymerase sigma factor RpoH
#=GS A0A1I5UQW6/45-120  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Enterovibrio; Enterovibrio norvegicus; 
#=GS A0A2A6MZ05/18-120  AC A0A2A6MZ05
#=GS A0A2A6MZ05/18-120  OS Bradyrhizobium diazoefficiens
#=GS A0A2A6MZ05/18-120  DE RNA polymerase sigma factor RpoH
#=GS A0A2A6MZ05/18-120  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS A0A0K9UQE2/45-122  AC A0A0K9UQE2
#=GS A0A0K9UQE2/45-122  OS Vibrio cholerae 2740-80
#=GS A0A0K9UQE2/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A0K9UQE2/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A085SIY5/45-122  AC A0A085SIY5
#=GS A0A085SIY5/45-122  OS Vibrio cholerae
#=GS A0A085SIY5/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A085SIY5/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0X1L517/45-122  AC A0A0X1L517
#=GS A0A0X1L517/45-122  OS Vibrio cholerae MO10
#=GS A0A0X1L517/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A0X1L517/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3Q594/45-122  AC A0A0H3Q594
#=GS A0A0H3Q594/45-122  OS Vibrio cholerae B33
#=GS A0A0H3Q594/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A0H3Q594/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS C3LPZ1/45-122      AC C3LPZ1
#=GS C3LPZ1/45-122      OS Vibrio cholerae M66-2
#=GS C3LPZ1/45-122      DE RNA polymerase sigma factor RpoH
#=GS C3LPZ1/45-122      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS D7HGQ2/45-122      AC D7HGQ2
#=GS D7HGQ2/45-122      OS Vibrio cholerae RC385
#=GS D7HGQ2/45-122      DE RNA polymerase sigma factor RpoH
#=GS D7HGQ2/45-122      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3AK24/45-122  AC A0A0H3AK24
#=GS A0A0H3AK24/45-122  OS Vibrio cholerae O395
#=GS A0A0H3AK24/45-122  DE RNA polymerase sigma factor RpoH
#=GS A0A0H3AK24/45-122  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS D0I499/44-122      AC D0I499
#=GS D0I499/44-122      OS Grimontia hollisae CIP 101886
#=GS D0I499/44-122      DE RNA polymerase sigma factor RpoH
#=GS D0I499/44-122      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia; Grimontia hollisae; 
#=GS A3WJ05/47-124      AC A3WJ05
#=GS A3WJ05/47-124      OS Idiomarina baltica OS145
#=GS A3WJ05/47-124      DE RNA polymerase sigma factor RpoH
#=GS A3WJ05/47-124      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina; Idiomarina baltica; 
#=GF SQ 27
P50511/45-122              ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
H7C6K8/18-120              -RYLAEIRKFPMLEPQQEYMLAKRWREHDDRDAAHQLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRS--
A0A348WQC4/47-124          ----------------------------KDLDAAKELIMSHLRFVVHIARGYSGYGLPQADLIQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
A0A1H5DIP1/16-119          VRYLDEIKRFPMLEPQQEYMLAKHWREHGDRRAAHQLVTSHLRLVAKIAMGYRGYGLPMSEVVSEGNVGLMQAVKRFEPERGFRLATYAMSWIKASIREYILRS--
A0A1T4UH74/45-120          ----------------------------GDLESAKSLILSHLRFVVHIARGYSGYGLPVSDLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRN--
A0A377HI96/44-122          ---------------------------EEDLDAAKSLILSHLRFVVHIARGYSGYGLPISDLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
A0A2E6UAJ5/47-124          ----------------------------KDLDAAKELIMSHLRFVVHIARGYSGYGLPQADLIQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
A0A0F5APC4/45-122          ----------------------------GDLEAAKSLILSHLRFVVHIARGYTGYGLPMADLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
P94330/18-120              -RYLAEIRKFPMLEPQQEYMLAKRWREHDDRDAAHQLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRS--
A0A366A5X0/45-122          ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
D0IMJ0/45-122              ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
A0A139C1D4/47-124          ----------------------------KDLDAAKELIMSHLRFVVHIARGYSGYGLPQADLIQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
A0A2E8QDV3/47-124          ----------------------------KDLDAAKELIMSHLRFVVHIARGYSGYGLPQADLIQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
U3C8B5/39-115              -----------------------------EIDSAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
A0A1V3GS42/45-122          ----------------------------GDLEAAKSLILSHLRFVVHIARGYTGYGLPMADLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
A0A3N9TBK2/44-120          ---------------------------KGEIEAAKSLILSHLRFVVHIARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRN--
A0A1I5UQW6/45-120          ----------------------------EDLDAAKSLILSHLRFVVHIARGYSGYGLPVSDLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRN--
A0A2A6MZ05/18-120          -RYLAEIRKFPMLEPQQEYMLAKRWREHDDRDAAHQLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRS--
A0A0K9UQE2/45-122          ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
A0A085SIY5/45-122          ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
A0A0X1L517/45-122          ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
A0A0H3Q594/45-122          ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
C3LPZ1/45-122              ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
D7HGQ2/45-122              ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
A0A0H3AK24/45-122          ----------------------------GDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLRNWR
D0I499/44-122              ---------------------------EEDLDAAKSLILSHLRFVVHIARGYSGYGLPISDLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
A3WJ05/47-124              ----------------------------KDLDAAKELIMSHLRFVVHIARGYSGYGLPQADLIQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR
#=GC scorecons             0111011001111111111111101111484789649759999696679599599999567685999799969999969949599667964999959699799622
#=GC scorecons_70          _____________________________*_***__**_******__**_**_*****__***_*************_**_*_**__***_****_*******___
#=GC scorecons_80          _____________________________*__**__*__****_*__**_**_*****____*_***_***_*****_**_*_**__**__****_*_**_**___
#=GC scorecons_90          _____________________________*__**__*__****_*___*_**_*****______***_***_*****_**_*_**___*__****_*_**_**___
//