# STOCKHOLM 1.0 #=GF ID 1.10.8.1190/FF/000003 #=GF DE Replicase polyprotein 1ab #=GF AC 1.10.8.1190/FF/000003 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 21.650 #=GS P0C6X8/1023-1116 AC P0C6X8 #=GS P0C6X8/1023-1116 OS Murine hepatitis virus strain 2 #=GS P0C6X8/1023-1116 DE Replicase polyprotein 1ab #=GS P0C6X8/1023-1116 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6X8/1023-1116 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6V1/1074-1168 AC P0C6V1 #=GS P0C6V1/1074-1168 OS Murine hepatitis virus strain JHM #=GS P0C6V1/1074-1168 DE Replicase polyprotein 1a #=GS P0C6V1/1074-1168 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6V1/1074-1168 DR GO; GO:0004197; GO:0097264; #=GS P0C6V1/1074-1168 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6V0/1075-1169 AC P0C6V0 #=GS P0C6V0/1075-1169 OS Murine hepatitis virus strain A59 #=GS P0C6V0/1075-1169 DE Replicase polyprotein 1a #=GS P0C6V0/1075-1169 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6V0/1075-1169 DR GO; GO:0097264; #=GS P0C6V0/1075-1169 DR EC; 3.4.19.12; 3.4.22.69; #=GS P0C6Y0/1074-1168 AC P0C6Y0 #=GS P0C6Y0/1074-1168 OS Murine hepatitis virus strain JHM #=GS P0C6Y0/1074-1168 DE Replicase polyprotein 1ab #=GS P0C6Y0/1074-1168 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6Y0/1074-1168 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6X9/1075-1169 AC P0C6X9 #=GS P0C6X9/1075-1169 OS Murine hepatitis virus strain A59 #=GS P0C6X9/1075-1169 DE Replicase polyprotein 1ab #=GS P0C6X9/1075-1169 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6X9/1075-1169 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS P0C6U9/1022-1116 AC P0C6U9 #=GS P0C6U9/1022-1116 OS Murine hepatitis virus strain 2 #=GS P0C6U9/1022-1116 DE Replicase polyprotein 1a #=GS P0C6U9/1022-1116 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P0C6U9/1022-1116 DR EC; 3.4.19.12; 3.4.22.69; #=GS I7AWB5/1074-1168 AC I7AWB5 #=GS I7AWB5/1074-1168 OS Murine coronavirus #=GS I7AWB5/1074-1168 DE Polyprotein ORF1ab #=GS I7AWB5/1074-1168 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C6GHR8/1075-1166 AC C6GHR8 #=GS C6GHR8/1075-1166 OS Rat coronavirus Parker #=GS C6GHR8/1075-1166 DE Orf1ab polyprotein #=GS C6GHR8/1075-1166 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C6GHR9/1075-1166 AC C6GHR9 #=GS C6GHR9/1075-1166 OS Rat coronavirus Parker #=GS C6GHR9/1075-1166 DE Orf1a polyprotein #=GS C6GHR9/1075-1166 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS Q9J3E9/1072-1166 AC Q9J3E9 #=GS Q9J3E9/1072-1166 OS Murine hepatitis virus #=GS Q9J3E9/1072-1166 DE RNA-directed RNA polymerase #=GS Q9J3E9/1072-1166 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C0KYS8/1075-1169 AC C0KYS8 #=GS C0KYS8/1075-1169 OS Murine coronavirus RA59/SJHM #=GS C0KYS8/1075-1169 DE ORF1a polyprotein #=GS C0KYS8/1075-1169 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C0KYT7/1075-1169 AC C0KYT7 #=GS C0KYT7/1075-1169 OS Murine coronavirus repA59/RJHM #=GS C0KYT7/1075-1169 DE ORF1a polyprotein #=GS C0KYT7/1075-1169 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS C0KYQ8/1075-1169 AC C0KYQ8 #=GS C0KYQ8/1075-1169 OS Murine coronavirus RA59/R13 #=GS C0KYQ8/1075-1169 DE ORF1a polyprotein #=GS C0KYQ8/1075-1169 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS I7B5F2/1074-1168 AC I7B5F2 #=GS I7B5F2/1074-1168 OS Murine coronavirus #=GS I7B5F2/1074-1168 DE Polyprotein ORF1a #=GS I7B5F2/1074-1168 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS P26627/342-437 AC P26627 #=GS P26627/342-437 OS Murine hepatitis virus strain defective JHM #=GS P26627/342-437 DE Replicase polyprotein 1ab #=GS P26627/342-437 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS Q83354/495-589 AC Q83354 #=GS Q83354/495-589 OS Murine hepatitis virus #=GS Q83354/495-589 DE Autoproteolytic cleavage domain #=GS Q83354/495-589 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GS Q7M006/705-800 AC Q7M006 #=GS Q7M006/705-800 OS Murine hepatitis virus #=GS Q7M006/705-800 DE RNA-directed RNA polymerase #=GS Q7M006/705-800 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; #=GF SQ 17 P0C6X8/1023-1116 --DKTYEDVLAFDAIYSEALSAFYAVPGDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKSSYNKEFVDKLVKSVPKSI P0C6V1/1074-1168 -ADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSI P0C6V0/1075-1169 -ADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI P0C6Y0/1074-1168 -ADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSI P0C6X9/1075-1169 -ADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI P0C6U9/1022-1116 -ADKTYEDVLAFDAIYSEALSAFYAVPGDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKSSYNKEFVDKLVKSVPKSI I7AWB5/1074-1168 -ADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSI C6GHR8/1075-1166 ---RTYEDVLAFDAIYSKALSAVYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPRS- C6GHR9/1075-1166 ---RTYEDVLAFDAIYSKALSAVYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPRS- Q9J3E9/1072-1166 -ADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI C0KYS8/1075-1169 -ADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI C0KYT7/1075-1169 -ADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI C0KYQ8/1075-1169 -ADKTYEDVLAFDAVCSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI I7B5F2/1074-1168 -ADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSI P26627/342-437 PADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSI Q83354/495-589 -ADKTYEDVLAFDAIYSETLSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLGMQKLWLSYKAGYDQCFVDKLVKSAPKSI Q7M006/705-800 PADKTYEDVLAFDAVYSEALSAFYAVPSDETHFKVCGFYSPAIERTNCWLRSTLIVMQSLPLEFKDLEMQKLWLSYKAGYDQCFVDKLVKSVPKSI #=GC scorecons 045799999999997797699969999799999999999999999999999999999999999999969999999997797769999999969795 #=GC scorecons_70 ___*******************************************************************************_************_ #=GC scorecons_80 ___************_*__***_********************************************_**************_********_***_ #=GC scorecons_90 ____**********__*__***_****_***************************************_*********__*___********_*_*_ //