# STOCKHOLM 1.0
#=GF ID 1.10.565.10/FF/000056
#=GF DE Nuclear hormone receptor family member nhr-49
#=GF AC 1.10.565.10/FF/000056
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 21.073
#=GS O45666/157-430      AC O45666
#=GS O45666/157-430      OS Caenorhabditis elegans
#=GS O45666/157-430      DE Nuclear hormone receptor family member nhr-49
#=GS O45666/157-430      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS O45666/157-430      DR GO; GO:0005515; GO:0005634; GO:0005737; GO:0008340; GO:0019216; GO:0019217; GO:0036003; GO:0045944; 
#=GS E5QCI8/11-284       AC E5QCI8
#=GS E5QCI8/11-284       OS Caenorhabditis elegans
#=GS E5QCI8/11-284       DE Nuclear hormone receptor family member nhr-49
#=GS E5QCI8/11-284       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS E5QCI8/11-284       DR GO; GO:0005515; GO:0005634; GO:0008340; GO:0019216; GO:0019217; GO:0045944; 
#=GS E3M3B9/147-424      AC E3M3B9
#=GS E3M3B9/147-424      OS Caenorhabditis remanei
#=GS E3M3B9/147-424      DE CRE-NHR-49 protein
#=GS E3M3B9/147-424      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A261B4T6/145-422  AC A0A261B4T6
#=GS A0A261B4T6/145-422  OS Caenorhabditis latens
#=GS A0A261B4T6/145-422  DE Uncharacterized protein
#=GS A0A261B4T6/145-422  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS G0P1Q8/133-406      AC G0P1Q8
#=GS G0P1Q8/133-406      OS Caenorhabditis brenneri
#=GS G0P1Q8/133-406      DE Uncharacterized protein
#=GS G0P1Q8/133-406      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A8WWW4/128-404      AC A8WWW4
#=GS A8WWW4/128-404      OS Caenorhabditis briggsae
#=GS A8WWW4/128-404      DE Protein CBR-NHR-49
#=GS A8WWW4/128-404      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5VFC4/162-438  AC A0A2G5VFC4
#=GS A0A2G5VFC4/162-438  OS Caenorhabditis nigoni
#=GS A0A2G5VFC4/162-438  DE Uncharacterized protein
#=GS A0A2G5VFC4/162-438  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A1I7U4S9/130-400  AC A0A1I7U4S9
#=GS A0A1I7U4S9/130-400  OS Caenorhabditis tropicalis
#=GS A0A1I7U4S9/130-400  DE Uncharacterized protein
#=GS A0A1I7U4S9/130-400  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS H2WH56/63-339       AC H2WH56
#=GS H2WH56/63-339       OS Caenorhabditis japonica
#=GS H2WH56/63-339       DE Uncharacterized protein
#=GS H2WH56/63-339       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS G0MFM3/133-406      AC G0MFM3
#=GS G0MFM3/133-406      OS Caenorhabditis brenneri
#=GS G0MFM3/133-406      DE Uncharacterized protein
#=GS G0MFM3/133-406      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GF SQ 10
O45666/157-430              ---QSSSVIDALMEMEARVNQEMCNRYRRSQIF-ANGSGGSNGN--DTDIQQGSD-SGASAFAPP-NRPCTTEVDLNEISRTTLLLMVEWAKTINPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAP-
E5QCI8/11-284               ---QSSSVIDALMEMEARVNQEMCNRYRRSQIF-ANGSGGSNGN--DTDIQQGSD-SGASAFAPP-NRPCTTE-DLNEISRTTLLLMVEWAKTINPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAPV
E3M3B9/147-424              AGATQSSVIDGLMDMESRVNQEMCNRYRRSQIF-VNGNGSSGNESGDNPLGAGG--SDGSAFAPP-NRACTTEVDLNEISRTTLLLMVEWAKTITPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNTSQIMIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAP-
A0A261B4T6/145-422          AGATQSSVIDGLMDMESRVNQEMCNRYRRSQIF-VNGNGSSGNESGDNPLGAGG--SDGSAFAPP-NRACTTEVDLNEISRTTLLLMVEWAKTITPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNTSQIMIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAP-
G0P1Q8/133-406              -ATQSSSVIDALMEMEARVNQEMCNRYRRSQIF-VNGNGGTDA---DITISQGA--SDGSAFAPP-NRPCTTEVDLNEISRTTLLLMVEWAKTISPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNTSQGLIRDARNRVLKALYAFILEQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHTTAP-
A8WWW4/128-404              -GATQPSVIDSLMDMESRVNQEMCNRYRKSQIF-VNGNGTAGNEAEAASIQQVA--SDGSAFAPP-NRPCTTTEDLNEISRTTLLLMVEWAKTITPFMELSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNASQIMIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSAAP-
A0A2G5VFC4/162-438          -GATQPSVIDSLMDMESRVNQEMCNRYRKSQIF-VNGNGTAGNEAEAASIQQVA--SDGSAFAPP-NRPCTTTEDLNEISRTTLLLMVEWAKTITPFMELSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNASQIMIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSAAP-
A0A1I7U4S9/130-400          -SANQPGVIDALMEMEARVNQEMCNRYRRSQIF-ANGNGEPMA---DSGIQAGE----SSAFAPPTNRPCTTE-DLNEISRTTLLLMVEWAKTIPPFMDLTMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLTNASQVMIRDARNRVLKALYAFILEQMPEEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHTSA--
H2WH56/63-339               --SSSSSVIDALMEMEARVNQEMCNRYRRSQIFNMNGNGEANGAQVDPVLQQAAESTGSSAFAPP-NRPCTTE-DLNEISRTTLLLMVEWAKTINPFMELSMDDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNESQILIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTA--
G0MFM3/133-406              -ATQSSSVIDALMEMEARVNQEMCNRYRRSQIF-VNGNGGNDA---DITISQGA--SDGSAFAPP-NRPCTTEVDLNEISRTTLLLMVEWAKTISPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNTSQGLIRDARNRVLKALYAFILEQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHTTAP-
#=GC scorecons              0234567999599799699999999999799990599794444200633655540054599999909979996299999999999999999999499979798999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999794995799999999999999999799987999999999999999999999999999999999999999999999999999966940
#=GC scorecons_70           _____*****_*****_****************__****_______*__*_________******_*******_********************_*******************************************************************************************************_**_*****************************************************************************_*__
#=GC scorecons_80           ______****_**_**_****************__**_*____________________******_**_***__********************_*******************************************************************************************************_**__***************************************************************************__*__
#=GC scorecons_90           _______***_**_**_***********_****__**_*____________________******_**_***__********************_***_*_***********************************************************************************************_*_**__*****************_****_****************************************************__*__
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