# STOCKHOLM 1.0
#=GF ID 1.10.418.20/FF/000008
#=GF DE Ubiquitin-like-specific protease 1
#=GF AC 1.10.418.20/FF/000008
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 41.021
#=GS 2hl9A01/8-65_171-217        AC Q02724
#=GS 2hl9A01/8-65_171-217        OS Saccharomyces cerevisiae S288C
#=GS 2hl9A01/8-65_171-217        DE Ubiquitin-like-specific protease 1
#=GS 2hl9A01/8-65_171-217        DR CATH; 2hl9; A:408-465; A:571-617; 
#=GS 2hl9A01/8-65_171-217        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2hl9A01/8-65_171-217        DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 2hl9A01/8-65_171-217        DR EC; 3.4.22.68; 
#=GS 2hl8A01/8-65_171-217        AC Q02724
#=GS 2hl8A01/8-65_171-217        OS Saccharomyces cerevisiae S288C
#=GS 2hl8A01/8-65_171-217        DE Ubiquitin-like-specific protease 1
#=GS 2hl8A01/8-65_171-217        DR CATH; 2hl8; A:408-465; A:571-617; 
#=GS 2hl8A01/8-65_171-217        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2hl8A01/8-65_171-217        DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 2hl8A01/8-65_171-217        DR EC; 3.4.22.68; 
#=GS 2hkpA01/8-65_171-217        AC Q02724
#=GS 2hkpA01/8-65_171-217        OS Saccharomyces cerevisiae S288C
#=GS 2hkpA01/8-65_171-217        DE Ubiquitin-like-specific protease 1
#=GS 2hkpA01/8-65_171-217        DR CATH; 2hkp; A:408-465; A:571-617; 
#=GS 2hkpA01/8-65_171-217        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2hkpA01/8-65_171-217        DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 2hkpA01/8-65_171-217        DR EC; 3.4.22.68; 
#=GS 1euvA01/8-65_171-217        AC Q02724
#=GS 1euvA01/8-65_171-217        OS Saccharomyces cerevisiae S288C
#=GS 1euvA01/8-65_171-217        DE Ubiquitin-like-specific protease 1
#=GS 1euvA01/8-65_171-217        DR CATH; 1euv; A:408-465; A:571-617; 
#=GS 1euvA01/8-65_171-217        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 1euvA01/8-65_171-217        DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS 1euvA01/8-65_171-217        DR EC; 3.4.22.68; 
#=GS Q02724/425-465_571-609      AC Q02724
#=GS Q02724/425-465_571-609      OS Saccharomyces cerevisiae S288C
#=GS Q02724/425-465_571-609      DE Ubiquitin-like-specific protease 1
#=GS Q02724/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS Q02724/425-465_571-609      DR GO; GO:0000086; GO:0005635; GO:0005730; GO:0008234; GO:0016926; GO:0044877; GO:0070140; 
#=GS Q02724/425-465_571-609      DR EC; 3.4.22.68; 
#=GS Q750H2/329-367_473-510      AC Q750H2
#=GS Q750H2/329-367_473-510      OS Eremothecium gossypii ATCC 10895
#=GS Q750H2/329-367_473-510      DE AGL019Wp
#=GS Q750H2/329-367_473-510      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS R9XK74/330-368_474-511      AC R9XK74
#=GS R9XK74/330-368_474-511      OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XK74/330-368_474-511      DE AaceriAGL019Wp
#=GS R9XK74/330-368_474-511      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS J5PCP2/429-469_575-613      AC J5PCP2
#=GS J5PCP2/429-469_575-613      OS Saccharomyces kudriavzevii IFO 1802
#=GS J5PCP2/429-469_575-613      DE ULP1-like protein
#=GS J5PCP2/429-469_575-613      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces kudriavzevii; 
#=GS H0GQA9/349-389_495-533      AC H0GQA9
#=GS H0GQA9/349-389_495-533      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GQA9/349-389_495-533      DE Ulp1p
#=GS H0GQA9/349-389_495-533      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VFW2/425-465_571-609  AC A0A0L8VFW2
#=GS A0A0L8VFW2/425-465_571-609  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VFW2/425-465_571-609  DE ULP1p Protease that specifically cleaves Smt3p protein conjugates
#=GS A0A0L8VFW2/425-465_571-609  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS A0A0L8RAR7/429-469_575-613  AC A0A0L8RAR7
#=GS A0A0L8RAR7/429-469_575-613  OS Saccharomyces eubayanus
#=GS A0A0L8RAR7/429-469_575-613  DE ULP1-like protein
#=GS A0A0L8RAR7/429-469_575-613  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS N1NVI6/425-465_571-609      AC N1NVI6
#=GS N1NVI6/425-465_571-609      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NVI6/425-465_571-609      DE Ulp1p
#=GS N1NVI6/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZWM6/425-465_571-609      AC A6ZWM6
#=GS A6ZWM6/425-465_571-609      OS Saccharomyces cerevisiae YJM789
#=GS A6ZWM6/425-465_571-609      DE Smt3-specific protease
#=GS A6ZWM6/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8ZJ08/425-465_571-609      AC C8ZJ08
#=GS C8ZJ08/425-465_571-609      OS Saccharomyces cerevisiae EC1118
#=GS C8ZJ08/425-465_571-609      DE Ulp1p
#=GS C8ZJ08/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WPF8/425-465_571-609      AC G2WPF8
#=GS G2WPF8/425-465_571-609      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WPF8/425-465_571-609      DE K7_Ulp1p
#=GS G2WPF8/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B5VTE2/425-465_571-609      AC B5VTE2
#=GS B5VTE2/425-465_571-609      OS Saccharomyces cerevisiae AWRI1631
#=GS B5VTE2/425-465_571-609      DE YPL020Cp-like protein
#=GS B5VTE2/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LL43/425-465_571-609      AC B3LL43
#=GS B3LL43/425-465_571-609      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LL43/425-465_571-609      DE Uncharacterized protein
#=GS B3LL43/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GU31/425-465_571-609      AC C7GU31
#=GS C7GU31/425-465_571-609      OS Saccharomyces cerevisiae JAY291
#=GS C7GU31/425-465_571-609      DE Ulp1p
#=GS C7GU31/425-465_571-609      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 18
2hl9A01/8-65_171-217                NEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDXGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILT
2hl8A01/8-65_171-217                NEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDXGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILT
2hkpA01/8-65_171-217                NEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDXGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILT
1euvA01/8-65_171-217                NEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILT
Q02724/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
Q750H2/329-367_473-510              -------------------LNNKNNFEVTVRDFKTLAPRRWLNDTIIEYFMKQIELKYCPQQPNGFDCGVYVCTNALYLSEDQALAFDHQDAARMR---------
R9XK74/330-368_474-511              -------------------LNNKNNFEVTVRDFKTLAPRRWLNDTIIEYFMKQIELKYCPQQPNGFDCGIYVCTNALYMSEDQALVFDHQDAARMR---------
J5PCP2/429-469_575-613              -----------------TQLMNRDNLEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSACPQQPNGYDCGIYVCMNTLYGSSDAPFNFDYNDAIRMRR--------
H0GQA9/349-389_495-533              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
A0A0L8VFW2/425-465_571-609          -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
A0A0L8RAR7/429-469_575-613          -----------------AQLMNRDNLEISVRDFKTLAPKRWLNDTIIEFFMKYIEKSNCPQQPNGYDCGIYVCMNTLYGSADAPLDFNYNDAIRMRR--------
N1NVI6/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
A6ZWM6/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
C8ZJ08/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
G2WPF8/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
B5VTE2/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
B3LL43/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
C7GU31/425-465_571-609              -----------------TQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRR--------
#=GC scorecons                      000000000000000005596977969789999999998999999999799969966599999997949899969799696967869876996999500000000
#=GC scorecons_70                   ___________________**************************************_*********_**********_******_**********_________
#=GC scorecons_80                   ___________________*_****_**************************_**___*********_*****_****_*_*__*_***_**_***_________
#=GC scorecons_90                   ___________________*_*__*_*_********************_***_**___*******_*_*****_*_**_*_*__*_**__**_***_________
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