# STOCKHOLM 1.0
#=GF ID 1.10.340.70/FF/000004
#=GF DE Retrovirus-related Pol polyprotein from transposon 297-like Protein
#=GF AC 1.10.340.70/FF/000004
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 98.057
#=GS D2A5M1/480-563      AC D2A5M1
#=GS D2A5M1/480-563      OS Tribolium castaneum
#=GS D2A5M1/480-563      DE Retrovirus-related Pol polyprotein from transposon 297-like Protein
#=GS D2A5M1/480-563      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS D7ELV3/703-793      AC D7ELV3
#=GS D7ELV3/703-793      OS Tribolium castaneum
#=GS D7ELV3/703-793      DE Uncharacterized protein
#=GS D7ELV3/703-793      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS W4YBE8/573-656      AC W4YBE8
#=GS W4YBE8/573-656      OS Strongylocentrotus purpuratus
#=GS W4YBE8/573-656      DE Uncharacterized protein
#=GS W4YBE8/573-656      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4XPJ9/672-755      AC W4XPJ9
#=GS W4XPJ9/672-755      OS Strongylocentrotus purpuratus
#=GS W4XPJ9/672-755      DE Uncharacterized protein
#=GS W4XPJ9/672-755      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Z312/878-964      AC W4Z312
#=GS W4Z312/878-964      OS Strongylocentrotus purpuratus
#=GS W4Z312/878-964      DE Uncharacterized protein
#=GS W4Z312/878-964      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Z554/921-1006     AC W4Z554
#=GS W4Z554/921-1006     OS Strongylocentrotus purpuratus
#=GS W4Z554/921-1006     DE Uncharacterized protein
#=GS W4Z554/921-1006     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Y7U4/418-500      AC W4Y7U4
#=GS W4Y7U4/418-500      OS Strongylocentrotus purpuratus
#=GS W4Y7U4/418-500      DE Uncharacterized protein
#=GS W4Y7U4/418-500      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Y7U2/932-1016     AC W4Y7U2
#=GS W4Y7U2/932-1016     OS Strongylocentrotus purpuratus
#=GS W4Y7U2/932-1016     DE Uncharacterized protein
#=GS W4Y7U2/932-1016     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Y7U3/933-1017     AC W4Y7U3
#=GS W4Y7U3/933-1017     OS Strongylocentrotus purpuratus
#=GS W4Y7U3/933-1017     DE Uncharacterized protein
#=GS W4Y7U3/933-1017     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4ZJM0/890-974      AC W4ZJM0
#=GS W4ZJM0/890-974      OS Strongylocentrotus purpuratus
#=GS W4ZJM0/890-974      DE Uncharacterized protein
#=GS W4ZJM0/890-974      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4XI67/490-576      AC W4XI67
#=GS W4XI67/490-576      OS Strongylocentrotus purpuratus
#=GS W4XI67/490-576      DE Uncharacterized protein
#=GS W4XI67/490-576      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4YZ29/671-757      AC W4YZ29
#=GS W4YZ29/671-757      OS Strongylocentrotus purpuratus
#=GS W4YZ29/671-757      DE Uncharacterized protein
#=GS W4YZ29/671-757      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4YGB3/748-832      AC W4YGB3
#=GS W4YGB3/748-832      OS Strongylocentrotus purpuratus
#=GS W4YGB3/748-832      DE Uncharacterized protein
#=GS W4YGB3/748-832      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Z8V4/977-1053     AC W4Z8V4
#=GS W4Z8V4/977-1053     OS Strongylocentrotus purpuratus
#=GS W4Z8V4/977-1053     DE Uncharacterized protein
#=GS W4Z8V4/977-1053     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4YP04/935-1017     AC W4YP04
#=GS W4YP04/935-1017     OS Strongylocentrotus purpuratus
#=GS W4YP04/935-1017     DE Uncharacterized protein
#=GS W4YP04/935-1017     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Y1E4/936-1012     AC W4Y1E4
#=GS W4Y1E4/936-1012     OS Strongylocentrotus purpuratus
#=GS W4Y1E4/936-1012     DE Uncharacterized protein
#=GS W4Y1E4/936-1012     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4YGV7/936-1012     AC W4YGV7
#=GS W4YGV7/936-1012     OS Strongylocentrotus purpuratus
#=GS W4YGV7/936-1012     DE Uncharacterized protein
#=GS W4YGV7/936-1012     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Z5S8/927-1014     AC W4Z5S8
#=GS W4Z5S8/927-1014     OS Strongylocentrotus purpuratus
#=GS W4Z5S8/927-1014     DE Uncharacterized protein
#=GS W4Z5S8/927-1014     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4XTF3/425-512      AC W4XTF3
#=GS W4XTF3/425-512      OS Strongylocentrotus purpuratus
#=GS W4XTF3/425-512      DE Uncharacterized protein
#=GS W4XTF3/425-512      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS D6WEQ6/559-645      AC D6WEQ6
#=GS D6WEQ6/559-645      OS Tribolium castaneum
#=GS D6WEQ6/559-645      DE Retrovirus-related Pol polyprotein from transposon 297-like Protein
#=GS D6WEQ6/559-645      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS W4XYA9/534-614      AC W4XYA9
#=GS W4XYA9/534-614      OS Strongylocentrotus purpuratus
#=GS W4XYA9/534-614      DE Uncharacterized protein
#=GS W4XYA9/534-614      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS D7GYM9/657-730      AC D7GYM9
#=GS D7GYM9/657-730      OS Tribolium castaneum
#=GS D7GYM9/657-730      DE Transposon Ty3-I Gag-Pol polyprotein-like Protein
#=GS D7GYM9/657-730      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A0A139W8U7/892-978  AC A0A139W8U7
#=GS A0A139W8U7/892-978  OS Tribolium castaneum
#=GS A0A139W8U7/892-978  DE Uncharacterized protein
#=GS A0A139W8U7/892-978  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS W4Y5A8/830-915      AC W4Y5A8
#=GS W4Y5A8/830-915      OS Strongylocentrotus purpuratus
#=GS W4Y5A8/830-915      DE Uncharacterized protein
#=GS W4Y5A8/830-915      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS A0A1B8XWB8/495-580  AC A0A1B8XWB8
#=GS A0A1B8XWB8/495-580  OS Xenopus tropicalis
#=GS A0A1B8XWB8/495-580  DE Uncharacterized protein
#=GS A0A1B8XWB8/495-580  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; 
#=GS H2XQV4/459-533      AC H2XQV4
#=GS H2XQV4/459-533      OS Ciona intestinalis
#=GS H2XQV4/459-533      DE Uncharacterized protein
#=GS H2XQV4/459-533      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A0A1B8XUS4/585-675  AC A0A1B8XUS4
#=GS A0A1B8XUS4/585-675  OS Xenopus tropicalis
#=GS A0A1B8XUS4/585-675  DE Uncharacterized protein
#=GS A0A1B8XUS4/585-675  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; 
#=GF SQ 27
D2A5M1/480-563              ---------REILNDPDCSQDFTV-INNVVVTKTKPQKCFVPIAARLLAMKLYHD--YSSHIGWDKCIQKMREDLFWPKMGQCLKKYIKNCRSCVL---
D7ELV3/703-793              ----LPIATRRRAKNFILRDGVLY-KKNAATT-GLDYLLVIPKSLVGEILYNHHSEPMSGHLGTAKTFSKIKERYYWTNLQKDVEKYVRGCPDCQSK--
W4YBE8/573-656              ------NLKGSDRAMWNVRKEIAVTEDDIVL---RDKRIVIPEALHKRIIDIAHE----SHPGIVRTKALLRSKVWFESLDSKVESLVKDCPVCQTV--
W4XPJ9/672-755              ------EISEDLVPYHCVRNELAIFDDTCIA---RGTRAVIPKSLQHRVLQTAHE----SHPGVVKMKQRCREAIWWPAIDRRVEDLVRSCEACTLS--
W4Z312/878-964              --DHKSQLSLQLTPYFNIRDELTV-SDGVIF---RGERLVITKQMRTEIKRDLHV----GHSGVEGTLRRARELVYWPRMNQEISEYIQTCETCQEH--
W4Z554/921-1006             ---HKPQLSLQLTPYFNIRDELTV-NDGVIF---RGERLVIPKQMRSEIKRDLHV----GHSGVEGTLRRARELVYWPRMNQEISEYIQTCETCQEH--
W4Y7U4/418-500              ------KLPLSLTPYFSFRDEISV-TDDLIF---KGERLVIPKQMRRQIKEELHI----GHNGVEGTLRRAREYVYWPGMNKKIKEWIQTCETCQEN--
W4Y7U2/932-1016             ----KTKLPLSLTPYFSFRDELSV-TDDLIF---KGERLVIPKQMRRQIKEELHI----GHNGVEGTLRRASEYVYWPGMNKEIKEWIQTCETCQEN--
W4Y7U3/933-1017             ----KTKLPLSLTPYFSFRDELSV-TDDLIF---KGERLVIPKQMRRQIKEELHI----GHNGVEGTLRRAREYVYWPGMNKEIKEWIQTCETCQEN--
W4ZJM0/890-974              ----KTKLPLSLTPYFSFRDELSV-TDDLIF---KGERLVIPKQMRRQIKEELHI----GHNGVEGTLRRAREYVYWPGMNKEIKEWIQTCETCQEN--
W4XI67/490-576              --STSQTCTPEARPFFSIRHELTS-DNGIVF---KGLRCVIPADMRVEIRKKLHA----SHTGLESTLQRARECVYWPNMTSDMKDYLSRCEACNIY--
W4YZ29/671-757              --STSQACTPEARPFFSVRHELTS-DNGIVF---KGLRCVIPADMRVEIRKKLHA----SHTGLESTLQRARECVYWPNMTSDMKDYLSRCEACNIY--
W4YGB3/748-832              ----KSRLPPGTSPYFDIRDELTY-DEGIIF---RGQRCVIPVKVRPRVKQRLHS----AHTGIQATLARARECVFWPGMTSDLTDYLSHCEVCATF--
W4Z8V4/977-1053             -------------PYHSFRDELTE-IDGLIL---KGSRLVVPADLQKDMLDVLHQ----SHLGIVKLKSRARQVLFWPGMSAQIEDKVARCVICQTTR-
W4YP04/935-1017             ------AVPGSIREYFNFRDEITA-QNGIIF---KGQKVIIPEALRSRMVDKVHK----SHLGIEACIRRARDTLFWPGMSAQVKEKVEQCSICNSM--
W4Y1E4/936-1012             -----------VRGYYQFRDEITV-QNGVLY---KGMKVIVPTAMRALMLNRVHS----SHLGVDACVRRARDVLFWPGMQSEVKEKVTQCSTCNA---
W4YGV7/936-1012             -----------VRGYYQFRDEITV-QNGVLY---KGMKVIVPTAMRALMLNRVHS----SHLGVDACVRRARDVLFWPGMQSEVKEKVTQCSTCNA---
W4Z5S8/927-1014             -PEKRRELPRQLQRYWAFRDQLAV-EDGLIL---NGERILIPHSMREYILSKLHE----GHQGIEKTRLRAKASVYWESINDDIEVLVKGCSVCQEY--
W4XTF3/425-512              -PEKRRELPRQLQRYWAFRDQLAV-EDGLIL---NGERILIPHSMREYILSKLHE----GHQGIEKTRLRAKASVYWESINDDIEVLVKGCSVCQEY--
D6WEQ6/559-645              --KRKTQVPETIKFYWNIRDELST-DDGLIF---KGNRLVIPQTFREDILSQIYE----GHQGIEKCKIRARSTVYWPGISKQIENMVMRCWICEKY--
W4XYA9/534-614              --------PVAIRAYWNIRNELSE-AEGLIM---KGSRIVVPSTMKKQMLDKIHE----GHLGIEKCKRRAREVLYWPRINQDITEMVQNCNSCLMY--
D7GYM9/657-730              -----------------VGTTASF-YCDTST---QFVRPYVPFRLRKAAFKLFHE---PAHSGVRATSRAIRQKFVWPRMDDDVKRWTRVCIPCQRSK-
A0A139W8U7/892-978          ----SSQNSCSLNKLYFPEHACSI-VCDTST---GTIRPYLPEAYRKQVFYNVHN---LSHPGVNATTKMVKQKYMWPGIDKNCRTWARQCISCQRSK-
W4Y5A8/830-915              -----SDTSMVLETVPILITGGKI-ICDTSH---GLTRPFVPQDHRRAVFNAIHG---LSHPGVRATQRAIASRFIWPGMNKTVRKWAQECLPCQKSK-
A0A1B8XWB8/495-580          MLKVETQKDDTLQ---AVKDMHMQ-VDDLLM---SSDRVVIPKGSRAEMLRRLHS----AHQGIQRSKARARLIMCWPGMSKDIEQMVENCAVCQEE--
H2XQV4/459-533              --------------KRYQERRFPL-IGDVST---GIFRPFVPC-YAKKVMASLHQ---LSHPKVRPT-KFVSTRFVWPGMRQDISKYCRNCI-CQKCKI
A0A1B8XUS4/585-675          WPNSEKKVSPDLQPYYRIRHELSL-VDDYVVR--GSHRLLVPETLREKFIQLAHE----SHQGIVRTKQRLRELYWWPAMDADVVTAIHSCVTCQNHD-
#=GC scorecons              000011122123234334655443034545400044273568334633533348300005938544534556424487464445443543933953200
#=GC scorecons_70           _____________________________________*__**___*_______*______*_*________*____**_*__________*__*_____
#=GC scorecons_80           _____________________________________*___*___________*______*_*_____________*_____________*__*_____
#=GC scorecons_90           _________________________________________*___________*______*_*_____________*_____________*__*_____
//