# STOCKHOLM 1.0 #=GF ID 1.10.10.10/FF/000519 #=GF DE RNA polymerase sigma factor sigA #=GF AC 1.10.10.10/FF/000519 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 48.370 #=GS O24629/418-497 AC O24629 #=GS O24629/418-497 OS Arabidopsis thaliana #=GS O24629/418-497 DE RNA polymerase sigma factor sigA #=GS O24629/418-497 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS O24629/418-497 DR GO; GO:0005515; GO:0006352; GO:0006355; GO:0009507; GO:0016987; GO:0071461; GO:0071482; GO:0080005; GO:2001141; #=GS Q0J7T6/436-515 AC Q0J7T6 #=GS Q0J7T6/436-515 OS Oryza sativa Japonica Group #=GS Q0J7T6/436-515 DE RNA polymerase sigma factor sigA #=GS Q0J7T6/436-515 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS Q0J7T6/436-515 DR GO; GO:0006355; GO:0080005; GO:2001141; #=GS A0A0D3AS29/400-478 AC A0A0D3AS29 #=GS A0A0D3AS29/400-478 OS Brassica oleracea var. oleracea #=GS A0A0D3AS29/400-478 DE Uncharacterized protein #=GS A0A0D3AS29/400-478 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; #=GS O49935/397-476 AC O49935 #=GS O49935/397-476 OS Sinapis alba #=GS O49935/397-476 DE Sig1 protein #=GS O49935/397-476 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Sinapis; Sinapis alba; #=GS R0GH75/437-516 AC R0GH75 #=GS R0GH75/437-516 OS Capsella rubella #=GS R0GH75/437-516 DE Uncharacterized protein #=GS R0GH75/437-516 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS A0A3L6PNX3/422-501 AC A0A3L6PNX3 #=GS A0A3L6PNX3/422-501 OS Panicum miliaceum #=GS A0A3L6PNX3/422-501 DE RNA polymerase sigma factor sigA #=GS A0A3L6PNX3/422-501 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; #=GS A0A453RVE5/181-260 AC A0A453RVE5 #=GS A0A453RVE5/181-260 OS Aegilops tauschii subsp. strangulata #=GS A0A453RVE5/181-260 DE Uncharacterized protein #=GS A0A453RVE5/181-260 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; #=GS A0A0A9JFP9/165-244 AC A0A0A9JFP9 #=GS A0A0A9JFP9/165-244 OS Arundo donax #=GS A0A0A9JFP9/165-244 DE SIGA #=GS A0A0A9JFP9/165-244 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Arundinoideae; Arundineae; Arundo; Arundo donax; #=GS A0A078J1Z3/407-485 AC A0A078J1Z3 #=GS A0A078J1Z3/407-485 OS Brassica napus #=GS A0A078J1Z3/407-485 DE BnaA02g20170D protein #=GS A0A078J1Z3/407-485 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS M4CWB6/408-486 AC M4CWB6 #=GS M4CWB6/408-486 OS Brassica rapa subsp. pekinensis #=GS M4CWB6/408-486 DE Uncharacterized protein #=GS M4CWB6/408-486 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS D7KZ14/419-498 AC D7KZ14 #=GS D7KZ14/419-498 OS Arabidopsis lyrata subsp. lyrata #=GS D7KZ14/419-498 DE RNA polymerase sigma subunit 1 #=GS D7KZ14/419-498 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS C5YHG2/415-494 AC C5YHG2 #=GS C5YHG2/415-494 OS Sorghum bicolor #=GS C5YHG2/415-494 DE Uncharacterized protein #=GS C5YHG2/415-494 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS I1I198/447-526 AC I1I198 #=GS I1I198/447-526 OS Brachypodium distachyon #=GS I1I198/447-526 DE Uncharacterized protein #=GS I1I198/447-526 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS K3YH90/414-493 AC K3YH90 #=GS K3YH90/414-493 OS Setaria italica #=GS K3YH90/414-493 DE Uncharacterized protein #=GS K3YH90/414-493 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS A0A0D9X4Q9/446-525 AC A0A0D9X4Q9 #=GS A0A0D9X4Q9/446-525 OS Leersia perrieri #=GS A0A0D9X4Q9/446-525 DE Uncharacterized protein #=GS A0A0D9X4Q9/446-525 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A0A0E0EIC6/334-413 AC A0A0E0EIC6 #=GS A0A0E0EIC6/334-413 OS Oryza meridionalis #=GS A0A0E0EIC6/334-413 DE Uncharacterized protein #=GS A0A0E0EIC6/334-413 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS I1QFY1/444-523 AC I1QFY1 #=GS I1QFY1/444-523 OS Oryza glaberrima #=GS I1QFY1/444-523 DE Uncharacterized protein #=GS I1QFY1/444-523 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS A0A0E0QEQ6/436-515 AC A0A0E0QEQ6 #=GS A0A0E0QEQ6/436-515 OS Oryza rufipogon #=GS A0A0E0QEQ6/436-515 DE Uncharacterized protein #=GS A0A0E0QEQ6/436-515 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; #=GS A0A0D3GWN5/362-441 AC A0A0D3GWN5 #=GS A0A0D3GWN5/362-441 OS Oryza barthii #=GS A0A0D3GWN5/362-441 DE Uncharacterized protein #=GS A0A0D3GWN5/362-441 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS A0A0E0LRL8/446-525 AC A0A0E0LRL8 #=GS A0A0E0LRL8/446-525 OS Oryza punctata #=GS A0A0E0LRL8/446-525 DE Uncharacterized protein #=GS A0A0E0LRL8/446-525 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; #=GS A0A0E0I7K5/436-515 AC A0A0E0I7K5 #=GS A0A0E0I7K5/436-515 OS Oryza sativa f. spontanea #=GS A0A0E0I7K5/436-515 DE Uncharacterized protein #=GS A0A0E0I7K5/436-515 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; #=GS M8CE31/304-383 AC M8CE31 #=GS M8CE31/304-383 OS Aegilops tauschii #=GS M8CE31/304-383 DE RNA polymerase sigma factor rpoD #=GS M8CE31/304-383 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; #=GS A0A0E0EIC4/441-520 AC A0A0E0EIC4 #=GS A0A0E0EIC4/441-520 OS Oryza meridionalis #=GS A0A0E0EIC4/441-520 DE Uncharacterized protein #=GS A0A0E0EIC4/441-520 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS A0A453RWI2/194-273 AC A0A453RWI2 #=GS A0A453RWI2/194-273 OS Aegilops tauschii subsp. strangulata #=GS A0A453RWI2/194-273 DE Uncharacterized protein #=GS A0A453RWI2/194-273 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; #=GS A0A3L6RJ11/422-501 AC A0A3L6RJ11 #=GS A0A3L6RJ11/422-501 OS Panicum miliaceum #=GS A0A3L6RJ11/422-501 DE RNA polymerase sigma factor sigA #=GS A0A3L6RJ11/422-501 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; #=GS A0A0D9X4Q8/433-512 AC A0A0D9X4Q8 #=GS A0A0D9X4Q8/433-512 OS Leersia perrieri #=GS A0A0D9X4Q8/433-512 DE Uncharacterized protein #=GS A0A0D9X4Q8/433-512 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A2YRJ0/288-367 AC A2YRJ0 #=GS A2YRJ0/288-367 OS Oryza sativa Indica Group #=GS A2YRJ0/288-367 DE Uncharacterized protein #=GS A2YRJ0/288-367 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS A0A078ISK2/396-474 AC A0A078ISK2 #=GS A0A078ISK2/396-474 OS Brassica napus #=GS A0A078ISK2/396-474 DE BnaCnng23900D protein #=GS A0A078ISK2/396-474 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GF SQ 28 O24629/418-497 -NPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEA Q0J7T6/436-515 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA A0A0D3AS29/400-478 -NPWHGYDEWALKDEVRKLISATLGDREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKSKME- O49935/397-476 -NPWHGYDALALKDEVSKLISVTLGEREREIIRLYYGLDKECLTWEDISQRIGLSRERVRQVGLVALEKLKHAARKRKMEA R0GH75/437-516 -NPWHGYDELALKEEVSKLITATLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEA A0A3L6PNX3/422-501 NDPWHGFEQGYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKHLN- A0A453RVE5/181-260 -DPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKKLDA A0A0A9JFP9/165-244 NDPWHGFEEGYLKAEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKHLD- A0A078J1Z3/407-485 -NPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKSKME- M4CWB6/408-486 -NPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKSKME- D7KZ14/419-498 -NPWHGYDDLALKEEVSKLISATLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEA C5YHG2/415-494 NDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLD- I1I198/447-526 -DPWHGFEQWYLKEEVNKLLNSTLTERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMQKLKHAARRKKLDA K3YH90/414-493 NDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLD- A0A0D9X4Q9/446-525 NDPWHGFEEWYLKDEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKHLD- A0A0E0EIC6/334-413 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA I1QFY1/444-523 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA A0A0E0QEQ6/436-515 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA A0A0D3GWN5/362-441 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA A0A0E0LRL8/446-525 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA A0A0E0I7K5/436-515 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA M8CE31/304-383 -DPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKKLDA A0A0E0EIC4/441-520 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA A0A453RWI2/194-273 -DPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKKLDA A0A3L6RJ11/422-501 NDPWHGFEQGYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKHLN- A0A0D9X4Q8/433-512 NDPWHGFEEWYLKDEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKHLD- A2YRJ0/288-367 -DPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEA A0A078ISK2/396-474 -NPWHGYDEWALKDEVSKLISATLGDREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKSKME- #=GC scorecons 069999776459979957966589589987998997966969599999966599999999999979689999999755662 #=GC scorecons_70 _********__*****_***__**_*************_***_********_************************__**_ #=GC scorecons_80 __*****____**_**_**___**_****_*****_*__*_*_******___************_*_********______ #=GC scorecons_90 __****_____**_**__*____*_****_*****_*__*_*_******___************_*_********______ //