# STOCKHOLM 1.0 #=GF ID 4.10.60.10/FF/2178 #=GF DE Gag-pol fusion polyprotein #=GF AC 4.10.60.10/FF/2178 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 49.739 #=GS O91080/392-433 AC O91080 #=GS O91080/392-433 OS HIV-1 N_YBF30 #=GS O91080/392-433 DE Gag-Pol polyprotein #=GS O91080/392-433 DR GENE3D; 30ec7c94a189896a8dc8395a9508dc18/392-433; #=GS O91080/392-433 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; #=GS O91080/392-433 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS Q1A267/384-426 AC Q1A267 #=GS Q1A267/384-426 OS SIVcpz MB66 #=GS Q1A267/384-426 DE Gag-Pol polyprotein #=GS Q1A267/384-426 DR GENE3D; 3aa3fe5ba6a52d768b204fb78b1f47b2/384-426; #=GS Q1A267/384-426 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q1A267/384-426 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS Q1A249/392-432 AC Q1A249 #=GS Q1A249/392-432 OS SIVcpz EK505 #=GS Q1A249/392-432 DE Gag-Pol polyprotein #=GS Q1A249/392-432 DR GENE3D; 8c7e3b13122f612870de14c984f31290/392-432; #=GS Q1A249/392-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q1A249/392-432 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS Q9IDV9/391-432 AC Q9IDV9 #=GS Q9IDV9/391-432 OS HIV-1 N_YBF106 #=GS Q9IDV9/391-432 DE Gag-Pol polyprotein #=GS Q9IDV9/391-432 DR GENE3D; 9e8e65ed283e89a83c265e017bb44a3f/391-432; #=GS Q9IDV9/391-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; #=GS Q9IDV9/391-432 DR EC; 2.7.7.49; 2.7.7.7; 3.1.13.2; 3.1.26.13; 3.4.23.16; #=GS Q1A241/379-420 AC Q1A241 #=GS Q1A241/379-420 OS Simian immunodeficiency virus #=GS Q1A241/379-420 DE Gag polyprotein #=GS Q1A241/379-420 DR GENE3D; 0d5f8ecd2d85d5335ee8f956b90f6603/379-420; #=GS Q1A241/379-420 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS G8Z0M8/387-427 AC G8Z0M8 #=GS G8Z0M8/387-427 OS Simian immunodeficiency virus #=GS G8Z0M8/387-427 DE Gag polyprotein #=GS G8Z0M8/387-427 DR GENE3D; 5848956b5c8d5b0f6b794147997fe6e8/387-427; #=GS G8Z0M8/387-427 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS C7G2T6/394-434 AC C7G2T6 #=GS C7G2T6/394-434 OS Human immunodeficiency virus 1 #=GS C7G2T6/394-434 DE Gag polyprotein #=GS C7G2T6/394-434 DR GENE3D; 67418ba452b84612f45264eae6a62b3d/394-434; #=GS C7G2T6/394-434 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; #=GS O91079/392-433 AC O91079 #=GS O91079/392-433 OS HIV-1 N_YBF30 #=GS O91079/392-433 DE Gag polyprotein #=GS O91079/392-433 DR GENE3D; 6d5e3081f935ba704b468605b6bb9def/392-433; #=GS O91079/392-433 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; #=GS Q9ICT9/387-428 AC Q9ICT9 #=GS Q9ICT9/387-428 OS Simian immunodeficiency virus #=GS Q9ICT9/387-428 DE Gag polyprotein #=GS Q9ICT9/387-428 DR GENE3D; 70f6374aea9ce6183e433ae9cf6c3607/387-428; #=GS Q9ICT9/387-428 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q9ICT8/387-428 AC Q9ICT8 #=GS Q9ICT8/387-428 OS Simian immunodeficiency virus #=GS Q9ICT8/387-428 DE Gag polyprotein #=GS Q9ICT8/387-428 DR GENE3D; 770e3a7d76435c60ca56861f8533a70a/387-428; #=GS Q9ICT8/387-428 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS C7G2S7/394-434 AC C7G2S7 #=GS C7G2S7/394-434 OS Human immunodeficiency virus 1 #=GS C7G2S7/394-434 DE Gag polyprotein #=GS C7G2S7/394-434 DR GENE3D; 79493c797b222af52bef9068f5fae095/394-434; #=GS C7G2S7/394-434 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus 1; #=GS E5RDN8/384-426 AC E5RDN8 #=GS E5RDN8/384-426 OS Human immunodeficiency virus #=GS E5RDN8/384-426 DE Gag polyprotein #=GS E5RDN8/384-426 DR GENE3D; 7ecef086fa6830b2570097a58297a73d/384-426; #=GS E5RDN8/384-426 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Human immunodeficiency virus; #=GS Q9Q079/389-429 AC Q9Q079 #=GS Q9Q079/389-429 OS Simian immunodeficiency virus #=GS Q9Q079/389-429 DE Gag polyprotein #=GS Q9Q079/389-429 DR GENE3D; 8cba0fd2d69f481be2695eae94584631/389-429; #=GS Q9Q079/389-429 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS A0A0D4CI81/388-426 AC A0A0D4CI81 #=GS A0A0D4CI81/388-426 OS Simian immunodeficiency virus #=GS A0A0D4CI81/388-426 DE Gag polyprotein #=GS A0A0D4CI81/388-426 DR GENE3D; a13355f84e56609c5a62b6bfb600db2b/388-426; #=GS A0A0D4CI81/388-426 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS S4ST52/384-424 AC S4ST52 #=GS S4ST52/384-424 OS Simian immunodeficiency virus #=GS S4ST52/384-424 DE Gag polyprotein #=GS S4ST52/384-424 DR GENE3D; bac2aaeff4e858bebb542b278c7f2ed4/384-424; #=GS S4ST52/384-424 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q1A259/389-429 AC Q1A259 #=GS Q1A259/389-429 OS Simian immunodeficiency virus #=GS Q1A259/389-429 DE Gag polyprotein #=GS Q1A259/389-429 DR GENE3D; bd946c82d9034d197c04bfe6359b3e99/389-429; #=GS Q1A259/389-429 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS I2BF58/392-432 AC I2BF58 #=GS I2BF58/392-432 OS Simian immunodeficiency virus #=GS I2BF58/392-432 DE Gag polyprotein #=GS I2BF58/392-432 DR GENE3D; f53f2c4498d2cb7faa1e197e3a50a9ec/392-432; #=GS I2BF58/392-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GS Q1A250/392-432 AC Q1A250 #=GS Q1A250/392-432 OS SIVcpz EK505 #=GS Q1A250/392-432 DE Gag polyprotein #=GS Q1A250/392-432 DR GENE3D; f53f2c4498d2cb7faa1e197e3a50a9ec/392-432; #=GS Q1A250/392-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus; #=GF TC 90.3 9.0E-28 #=GF SQ 18 O91080/392-433 --PIKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNEG- Q1A267/384-426 --IVKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNERQ Q1A249/392-432 --TIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDCRSG-- Q9IDV9/391-432 --TIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNEG- Q1A241/379-420 --KIKCFNCGKEGHLARNCRAPRRKGCWKCGQEGHQMKDCNQNN- G8Z0M8/387-427 --KIKCFNCGKEGHLARNCRAPRRKGCWKCGQEGHQMRDCRKG-- C7G2T6/394-434 ---IKCFNCGKDGHIAKNCRAPRRRGCWKCGQEGHQMKDCKNGR- O91079/392-433 --PIKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNEG- Q9ICT9/387-428 -KKIKCYNCGKEGHVARNCRAPRRKGCWKCGQEGHNMKECTTG-- Q9ICT8/387-428 -KKIKCYNCGKEGHVARNCRAPRRKGCWKCGQEGHNMKECTTG-- C7G2S7/394-434 ---IKCFNCGKDGHIAKNCRAPRRRGCWKCGQEGHQMKDCKNGR- E5RDN8/384-426 RKPVKCFNCGKVGHIAKNCKAPRRRGCWKCGQEGHQMKDCKSG-- Q9Q079/389-429 --KIKCFNCGKEGHLARNCRAPRRKGCWKCGQEGHQMKNCPAG-- A0A0D4CI81/388-426 ----KCFNCGKLGHIAKNCRAPRRKGCWKCGQEGHQMKDCKIG-- S4ST52/384-424 --TIKCYNCGKEGHLARNCKAPRRKGCWKCGQEGHRMQDCKLS-- Q1A259/389-429 --VIKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHRMQDCNMG-- I2BF58/392-432 --TIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDCRSG-- Q1A250/392-432 --TIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDCRSG-- #=GC scorecons 002699899996996979979998699999999996977943600 #=GC scorecons_70 ___***********_*************************_____ #=GC scorecons_80 ____*******_**_****_****_**********_**_*_____ #=GC scorecons_90 ____**_****_**_*_**_****_**********_*__*_____ //