# STOCKHOLM 1.0 #=GF ID 4.10.60.10/FF/1120 #=GF DE Gag polyprotein #=GF AC 4.10.60.10/FF/1120 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 95.889 #=GS A0A1L2A1Q6/212-237 AC A0A1L2A1Q6 #=GS A0A1L2A1Q6/212-237 OS Visna/maedi virus #=GS A0A1L2A1Q6/212-237 DE Gag polyprotein #=GS A0A1L2A1Q6/212-237 DR GENE3D; 0422f6570ac63f17f03775656c5b70c9/212-237; #=GS A0A1L2A1Q6/212-237 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS A8T273/163-221 AC A8T273 #=GS A8T273/163-221 OS Small ruminant lentivirus #=GS A8T273/163-221 DE Gag protein #=GS A8T273/163-221 DR GENE3D; 091e60df374343e7805dd4465e1501f6/163-221; #=GS A8T273/163-221 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP69/162-223 AC Q6SP69 #=GS Q6SP69/162-223 OS Small ruminant lentivirus #=GS Q6SP69/162-223 DE Gag protein #=GS Q6SP69/162-223 DR GENE3D; 0952a7f65ed4b2c561088f7cc7c52639/162-223; #=GS Q6SP69/162-223 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP37/174-229 AC Q6SP37 #=GS Q6SP37/174-229 OS Small ruminant lentivirus #=GS Q6SP37/174-229 DE Gag protein #=GS Q6SP37/174-229 DR GENE3D; 1278f3510c61676fdb8d872dac75e601/174-229; #=GS Q6SP37/174-229 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS P03352/369-431 AC P03352 #=GS P03352/369-431 OS Visna lentivirus (strain 1514) #=GS P03352/369-431 DE Gag polyprotein #=GS P03352/369-431 DR GENE3D; 18de28b5cb867b9b993bb113599eaccb/369-431; #=GS P03352/369-431 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS Q9DKV9/358-417 AC Q9DKV9 #=GS Q9DKV9/358-417 OS Caprine arthritis encephalitis virus #=GS Q9DKV9/358-417 DE Gag polyprotein #=GS Q9DKV9/358-417 DR GENE3D; 19fe1ab877360effb508725f4f110cc1/358-417; #=GS Q9DKV9/358-417 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP78/163-223 AC Q6SP78 #=GS Q6SP78/163-223 OS Small ruminant lentivirus #=GS Q6SP78/163-223 DE Gag protein #=GS Q6SP78/163-223 DR GENE3D; 1a9a81c5aecd528797d8ef4be203b76b/163-223; #=GS Q6SP78/163-223 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS H6TKI0/359-420 AC H6TKI0 #=GS H6TKI0/359-420 OS Small ruminant lentivirus #=GS H6TKI0/359-420 DE Gag polyprotein #=GS H6TKI0/359-420 DR GENE3D; 1c2fa3d765b77dd6dcc91d4ea2640c8c/359-420; #=GS H6TKI0/359-420 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP58/163-224 AC Q6SP58 #=GS Q6SP58/163-224 OS Small ruminant lentivirus #=GS Q6SP58/163-224 DE Gag protein #=GS Q6SP58/163-224 DR GENE3D; 1cc7d0375c0924d0e0e97ce52c66ab85/163-224; #=GS Q6SP58/163-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A142J2Y5/380-438 AC A0A142J2Y5 #=GS A0A142J2Y5/380-438 OS Small ruminant lentivirus #=GS A0A142J2Y5/380-438 DE Gag polyprotein #=GS A0A142J2Y5/380-438 DR GENE3D; 1efdaf21d21e6503111c9d5dadc3db6e/380-438; #=GS A0A142J2Y5/380-438 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A8T298/163-224 AC A8T298 #=GS A8T298/163-224 OS Small ruminant lentivirus #=GS A8T298/163-224 DE Gag protein #=GS A8T298/163-224 DR GENE3D; 2497e20a2803255dbb88cfc5234af5df/163-224; #=GS A8T298/163-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP24/164-223 AC Q6SP24 #=GS Q6SP24/164-223 OS Small ruminant lentivirus #=GS Q6SP24/164-223 DE Gag protein #=GS Q6SP24/164-223 DR GENE3D; 2cd9809319b3b12e284e25f02b97951a/164-223; #=GS Q6SP24/164-223 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS B1P2I0/2-59 AC B1P2I0 #=GS B1P2I0/2-59 OS Small ruminant lentivirus #=GS B1P2I0/2-59 DE Nucleocapsid #=GS B1P2I0/2-59 DR GENE3D; 2dc24c7b0146fab4f296d57480c03ec8/2-59; #=GS B1P2I0/2-59 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS F0X367/160-219 AC F0X367 #=GS F0X367/160-219 OS Small ruminant lentivirus #=GS F0X367/160-219 DE Gag-pol polyprotein #=GS F0X367/160-219 DR GENE3D; 3dadd249c072f16f45ebedfb77557d2a/160-219; #=GS F0X367/160-219 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A3R3J7/405-453 AC A3R3J7 #=GS A3R3J7/405-453 OS Feline immunodeficiency virus #=GS A3R3J7/405-453 DE Gag polyprotein #=GS A3R3J7/405-453 DR GENE3D; 3fa96cfdb1fdabcc8e7814c49944830f/405-453; #=GS A3R3J7/405-453 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q6H1V6/369-431 AC Q6H1V6 #=GS Q6H1V6/369-431 OS Small ruminant lentivirus #=GS Q6H1V6/369-431 DE Gag polyprotein #=GS Q6H1V6/369-431 DR GENE3D; 423b00e000c4ffe17641a032a7eea08c/369-431; #=GS Q6H1V6/369-431 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS I6TGY8/89-132 AC I6TGY8 #=GS I6TGY8/89-132 OS Small ruminant lentivirus #=GS I6TGY8/89-132 DE Gag protein #=GS I6TGY8/89-132 DR GENE3D; 42f2b02ffac4d4349e5cdcd9fe19bc1c/89-132; #=GS I6TGY8/89-132 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5H9Z9/324-382 AC A0A0B5H9Z9 #=GS A0A0B5H9Z9/324-382 OS Small ruminant lentivirus #=GS A0A0B5H9Z9/324-382 DE Gag protein #=GS A0A0B5H9Z9/324-382 DR GENE3D; 44c0e4c40bbea366e27200e301d74753/324-382; #=GS A0A0B5H9Z9/324-382 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A140YI85/102-147 AC A0A140YI85 #=GS A0A140YI85/102-147 OS Small ruminant lentivirus #=GS A0A140YI85/102-147 DE Gag protein #=GS A0A140YI85/102-147 DR GENE3D; 4953a0b136b99168577e644a0eedb29c/102-147; #=GS A0A140YI85/102-147 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A5I841/160-223 AC A5I841 #=GS A5I841/160-223 OS Small ruminant lentivirus #=GS A5I841/160-223 DE Gag protein #=GS A5I841/160-223 DR GENE3D; 4b94b5e536876e968fa7c6d60203693a/160-223; #=GS A5I841/160-223 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HRA9/324-383 AC A0A0B5HRA9 #=GS A0A0B5HRA9/324-383 OS Small ruminant lentivirus #=GS A0A0B5HRA9/324-383 DE Gag protein #=GS A0A0B5HRA9/324-383 DR GENE3D; 4bbd0ebc07f82006103b151e0c99772d/324-383; #=GS A0A0B5HRA9/324-383 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HDW9/161-220 AC A0A0B5HDW9 #=GS A0A0B5HDW9/161-220 OS Small ruminant lentivirus #=GS A0A0B5HDW9/161-220 DE Gag protein #=GS A0A0B5HDW9/161-220 DR GENE3D; 4dd3839d63f30b626b577605e8c85d1c/161-220; #=GS A0A0B5HDW9/161-220 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP41/163-223 AC Q6SP41 #=GS Q6SP41/163-223 OS Small ruminant lentivirus #=GS Q6SP41/163-223 DE Gag protein #=GS Q6SP41/163-223 DR GENE3D; 56d18e5c39b1ac914a763133c2bfb2ad/163-223; #=GS Q6SP41/163-223 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS S5TP14/110-135 AC S5TP14 #=GS S5TP14/110-135 OS Small ruminant lentivirus #=GS S5TP14/110-135 DE Gag protein #=GS S5TP14/110-135 DR GENE3D; 7a43dabdb1daf172c0aad505c04ddfbc/110-135; #=GS S5TP14/110-135 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS M4LZ05/335-397 AC M4LZ05 #=GS M4LZ05/335-397 OS Visna/maedi virus #=GS M4LZ05/335-397 DE Gag protein #=GS M4LZ05/335-397 DR GENE3D; 7d3091d6a9ca07e668c046a47d4e5cff/335-397; #=GS M4LZ05/335-397 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS E0WMU9/176-216 AC E0WMU9 #=GS E0WMU9/176-216 OS Small ruminant lentivirus #=GS E0WMU9/176-216 DE Gag-pol polyprotein, intergenic region #=GS E0WMU9/176-216 DR GENE3D; 7d39002780afa5e3c8a3fc4f2f2a31f9/176-216; #=GS E0WMU9/176-216 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP82/162-223 AC Q6SP82 #=GS Q6SP82/162-223 OS Small ruminant lentivirus #=GS Q6SP82/162-223 DE Gag protein #=GS Q6SP82/162-223 DR GENE3D; 7fabc2fc8341e6c73cb8c9826ed12786/162-223; #=GS Q6SP82/162-223 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS I6TGY4/161-215 AC I6TGY4 #=GS I6TGY4/161-215 OS Small ruminant lentivirus #=GS I6TGY4/161-215 DE Gag protein #=GS I6TGY4/161-215 DR GENE3D; 8161b44e465437a103700f5defc43959/161-215; #=GS I6TGY4/161-215 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HJU3/169-224 AC A0A0B5HJU3 #=GS A0A0B5HJU3/169-224 OS Small ruminant lentivirus #=GS A0A0B5HJU3/169-224 DE Gag protein #=GS A0A0B5HJU3/169-224 DR GENE3D; 847fb9a7c1c1397acd5586146b95e64d/169-224; #=GS A0A0B5HJU3/169-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A8TCG8/363-422 AC A8TCG8 #=GS A8TCG8/363-422 OS Small ruminant lentivirus #=GS A8TCG8/363-422 DE Gag protein #=GS A8TCG8/363-422 DR GENE3D; 866f78c1671c647f81331643595a123f/363-422; #=GS A8TCG8/363-422 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP20/166-222 AC Q6SP20 #=GS Q6SP20/166-222 OS Small ruminant lentivirus #=GS Q6SP20/166-222 DE Gag protein #=GS Q6SP20/166-222 DR GENE3D; 8809bd70e838943bda5decb35740eda8/166-222; #=GS Q6SP20/166-222 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A8T289/163-224 AC A8T289 #=GS A8T289/163-224 OS Small ruminant lentivirus #=GS A8T289/163-224 DE Gag protein #=GS A8T289/163-224 DR GENE3D; 885637ba1897978fe07a00c3103b92eb/163-224; #=GS A8T289/163-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP85/164-224 AC Q6SP85 #=GS Q6SP85/164-224 OS Small ruminant lentivirus #=GS Q6SP85/164-224 DE Gag protein #=GS Q6SP85/164-224 DR GENE3D; 8a42c94fc4f6208119313340d3883d64/164-224; #=GS Q6SP85/164-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS M4LXA1/335-397 AC M4LXA1 #=GS M4LXA1/335-397 OS Visna/maedi virus #=GS M4LXA1/335-397 DE Gag protein #=GS M4LXA1/335-397 DR GENE3D; 8b97909bed935a4c445ceb67527ffc61/335-397; #=GS M4LXA1/335-397 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS B1P2I9/2-57 AC B1P2I9 #=GS B1P2I9/2-57 OS Small ruminant lentivirus #=GS B1P2I9/2-57 DE Nucleocapsid #=GS B1P2I9/2-57 DR GENE3D; 8da32f95dd01730fc570e6646aab6dfa/2-57; #=GS B1P2I9/2-57 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS F0X374/163-217 AC F0X374 #=GS F0X374/163-217 OS Small ruminant lentivirus #=GS F0X374/163-217 DE Gag-pol polyprotein #=GS F0X374/163-217 DR GENE3D; 91553278c49bad860e58c4f649abf36a/163-217; #=GS F0X374/163-217 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS E1Y7E0/159-214 AC E1Y7E0 #=GS E1Y7E0/159-214 OS Small ruminant lentivirus #=GS E1Y7E0/159-214 DE Gag-pol polyprotein, intergenic region #=GS E1Y7E0/159-214 DR GENE3D; 92aa4d2990a44cfd2a7609c43218f690/159-214; #=GS E1Y7E0/159-214 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP64/164-224 AC Q6SP64 #=GS Q6SP64/164-224 OS Small ruminant lentivirus #=GS Q6SP64/164-224 DE Gag protein #=GS Q6SP64/164-224 DR GENE3D; 93df3ff6018ac23656e9be80262da19a/164-224; #=GS Q6SP64/164-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS S5TMM5/110-136 AC S5TMM5 #=GS S5TMM5/110-136 OS Small ruminant lentivirus #=GS S5TMM5/110-136 DE Gag protein #=GS S5TMM5/110-136 DR GENE3D; 947ca19007e66bd658a9b7984c17208e/110-136; #=GS S5TMM5/110-136 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS E1Y6R2/161-216 AC E1Y6R2 #=GS E1Y6R2/161-216 OS Small ruminant lentivirus #=GS E1Y6R2/161-216 DE Gag-pol polyprotein #=GS E1Y6R2/161-216 DR GENE3D; 986c1234e8f430ac561e3c22ef1c5b99/161-216; #=GS E1Y6R2/161-216 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS E1Y6Q7/161-216 AC E1Y6Q7 #=GS E1Y6Q7/161-216 OS Small ruminant lentivirus #=GS E1Y6Q7/161-216 DE Gag-pol polyprotein #=GS E1Y6Q7/161-216 DR GENE3D; 986c1234e8f430ac561e3c22ef1c5b99/161-216; #=GS E1Y6Q7/161-216 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS K4HRA4/136-181 AC K4HRA4 #=GS K4HRA4/136-181 OS Small ruminant lentivirus #=GS K4HRA4/136-181 DE Gag protein #=GS K4HRA4/136-181 DR GENE3D; 9bb9eb4de485c598ffc1105fb8d9ab02/136-181; #=GS K4HRA4/136-181 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP62/163-224 AC Q6SP62 #=GS Q6SP62/163-224 OS Small ruminant lentivirus #=GS Q6SP62/163-224 DE Gag protein #=GS Q6SP62/163-224 DR GENE3D; 9e9e29872c288d704ae909592c130747/163-224; #=GS Q6SP62/163-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP25/162-218 AC Q6SP25 #=GS Q6SP25/162-218 OS Small ruminant lentivirus #=GS Q6SP25/162-218 DE Gag protein #=GS Q6SP25/162-218 DR GENE3D; afd819ea0da2747b4b13f5bb7778e1a3/162-218; #=GS Q6SP25/162-218 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS K4HUL0/126-177 AC K4HUL0 #=GS K4HUL0/126-177 OS Small ruminant lentivirus #=GS K4HUL0/126-177 DE Gag protein #=GS K4HUL0/126-177 DR GENE3D; b050a2d49d42caa55e8f6c26a422ba37/126-177; #=GS K4HUL0/126-177 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS E1Y7Z0/163-214 AC E1Y7Z0 #=GS E1Y7Z0/163-214 OS Small ruminant lentivirus #=GS E1Y7Z0/163-214 DE Gag-pol polyprotein #=GS E1Y7Z0/163-214 DR GENE3D; b0d23b0594d7a0f5c37fed601dd0635e/163-214; #=GS E1Y7Z0/163-214 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS C9DI70/365-426 AC C9DI70 #=GS C9DI70/365-426 OS Caprine arthritis encephalitis virus #=GS C9DI70/365-426 DE Gag polyprotein #=GS C9DI70/365-426 DR GENE3D; b15d879e3b60897c0db0df39c441680d/365-426; #=GS C9DI70/365-426 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A1L2A1Q1/210-263 AC A0A1L2A1Q1 #=GS A0A1L2A1Q1/210-263 OS Visna/maedi virus #=GS A0A1L2A1Q1/210-263 DE Gag polyprotein #=GS A0A1L2A1Q1/210-263 DR GENE3D; b3cac803b4dd7cfc7567ef241d951efb/210-263; #=GS A0A1L2A1Q1/210-263 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; #=GS A0A0B5HA56/162-222 AC A0A0B5HA56 #=GS A0A0B5HA56/162-222 OS Small ruminant lentivirus #=GS A0A0B5HA56/162-222 DE Gag protein #=GS A0A0B5HA56/162-222 DR GENE3D; b5c8391e467f3cdb384632b6d8b2d9fe/162-222; #=GS A0A0B5HA56/162-222 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS K7W925/163-223 AC K7W925 #=GS K7W925/163-223 OS Small ruminant lentivirus #=GS K7W925/163-223 DE Gag protein #=GS K7W925/163-223 DR GENE3D; b601af3e12b1f9bf68f56d432f2af98a/163-223; #=GS K7W925/163-223 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A8T2A6/177-229 AC A8T2A6 #=GS A8T2A6/177-229 OS Small ruminant lentivirus #=GS A8T2A6/177-229 DE Gag protein #=GS A8T2A6/177-229 DR GENE3D; b89a1f3c75db1f9fe066cea8137cb142/177-229; #=GS A8T2A6/177-229 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS E1Y6Q1/160-216 AC E1Y6Q1 #=GS E1Y6Q1/160-216 OS Small ruminant lentivirus #=GS E1Y6Q1/160-216 DE Gag-pol polyprotein #=GS E1Y6Q1/160-216 DR GENE3D; b950dac0c5a759ce958d15aac027ff63/160-216; #=GS E1Y6Q1/160-216 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP48/161-222 AC Q6SP48 #=GS Q6SP48/161-222 OS Small ruminant lentivirus #=GS Q6SP48/161-222 DE Gag protein #=GS Q6SP48/161-222 DR GENE3D; bcec9e95b156261cc0efb83ebfc25362/161-222; #=GS Q6SP48/161-222 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A140YI81/110-135 AC A0A140YI81 #=GS A0A140YI81/110-135 OS Small ruminant lentivirus #=GS A0A140YI81/110-135 DE Gag protein #=GS A0A140YI81/110-135 DR GENE3D; c6d99e25e5cfb304325f84754513bcca/110-135; #=GS A0A140YI81/110-135 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP66/163-224 AC Q6SP66 #=GS Q6SP66/163-224 OS Small ruminant lentivirus #=GS Q6SP66/163-224 DE Gag protein #=GS Q6SP66/163-224 DR GENE3D; cabf8498a1e5712ae125424793284bdf/163-224; #=GS Q6SP66/163-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HMN0/322-379 AC A0A0B5HMN0 #=GS A0A0B5HMN0/322-379 OS Small ruminant lentivirus #=GS A0A0B5HMN0/322-379 DE Gag protein #=GS A0A0B5HMN0/322-379 DR GENE3D; cda7667068be3867a48fd5f6ecb3e1d2/322-379; #=GS A0A0B5HMN0/322-379 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP22/163-224 AC Q6SP22 #=GS Q6SP22/163-224 OS Small ruminant lentivirus #=GS Q6SP22/163-224 DE Gag protein #=GS Q6SP22/163-224 DR GENE3D; cf630d55c084e292591193265034687c/163-224; #=GS Q6SP22/163-224 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS F6M1H2/195-252 AC F6M1H2 #=GS F6M1H2/195-252 OS Caprine arthritis encephalitis virus #=GS F6M1H2/195-252 DE Gag protein #=GS F6M1H2/195-252 DR GENE3D; d43ffdb8486a23e09352bb04b01c25a2/195-252; #=GS F6M1H2/195-252 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS F6M1G9/183-240 AC F6M1G9 #=GS F6M1G9/183-240 OS Caprine arthritis encephalitis virus #=GS F6M1G9/183-240 DE Gag protein #=GS F6M1G9/183-240 DR GENE3D; de63e8c7867fadb93b5a2ae08a513875/183-240; #=GS F6M1G9/183-240 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A8TCG0/364-425 AC A8TCG0 #=GS A8TCG0/364-425 OS Small ruminant lentivirus #=GS A8TCG0/364-425 DE Gag protein #=GS A8TCG0/364-425 DR GENE3D; e20cc2db72faab4af4bc93a0dba68738/364-425; #=GS A8TCG0/364-425 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS F6M1G8/190-231 AC F6M1G8 #=GS F6M1G8/190-231 OS Caprine arthritis encephalitis virus #=GS F6M1G8/190-231 DE Gag protein #=GS F6M1G8/190-231 DR GENE3D; e2e941de6abffd0c63550ca8ca7fffea/190-231; #=GS F6M1G8/190-231 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A089ZX67/364-423 AC A0A089ZX67 #=GS A0A089ZX67/364-423 OS Caprine arthritis encephalitis virus #=GS A0A089ZX67/364-423 DE Gag polyprotein #=GS A0A089ZX67/364-423 DR GENE3D; e3b4520e1fa8db160469abf72fbf1211/364-423; #=GS A0A089ZX67/364-423 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS F8RS66/357-413 AC F8RS66 #=GS F8RS66/357-413 OS Small ruminant lentivirus #=GS F8RS66/357-413 DE Gag protein #=GS F8RS66/357-413 DR GENE3D; e3e86de1e49a20b99c68fb1374c44294/357-413; #=GS F8RS66/357-413 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS S5TMR8/110-135 AC S5TMR8 #=GS S5TMR8/110-135 OS Small ruminant lentivirus #=GS S5TMR8/110-135 DE Gag protein #=GS S5TMR8/110-135 DR GENE3D; e4656b2536b57acc911080223cd18be5/110-135; #=GS S5TMR8/110-135 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6SP31/160-222 AC Q6SP31 #=GS Q6SP31/160-222 OS Small ruminant lentivirus #=GS Q6SP31/160-222 DE Gag protein #=GS Q6SP31/160-222 DR GENE3D; ec24acfd79fac59db4834db7b3a8887b/160-222; #=GS Q6SP31/160-222 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS Q6WXQ3/371-432 AC Q6WXQ3 #=GS Q6WXQ3/371-432 OS Ovine lentivirus #=GS Q6WXQ3/371-432 DE Gag polyprotein #=GS Q6WXQ3/371-432 DR GENE3D; ec9eaaef7d0a64ef87fa1a9afb70857d/371-432; #=GS Q6WXQ3/371-432 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Ovine lentivirus; #=GS I6T4K6/137-181 AC I6T4K6 #=GS I6T4K6/137-181 OS Small ruminant lentivirus #=GS I6T4K6/137-181 DE Gag protein #=GS I6T4K6/137-181 DR GENE3D; ed639b04ed58c941cb373d3ce1015faa/137-181; #=GS I6T4K6/137-181 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A8T266/161-221 AC A8T266 #=GS A8T266/161-221 OS Small ruminant lentivirus #=GS A8T266/161-221 DE Gag protein #=GS A8T266/161-221 DR GENE3D; ee5af677d4c2fe3219c1fc47b2f2a00d/161-221; #=GS A8T266/161-221 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS E1Y728/163-217 AC E1Y728 #=GS E1Y728/163-217 OS Small ruminant lentivirus #=GS E1Y728/163-217 DE Gag-pol polyprotein #=GS E1Y728/163-217 DR GENE3D; f3bc5f978d16880fa13fe054bc83e4db/163-217; #=GS E1Y728/163-217 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS P33458/364-423 AC P33458 #=GS P33458/364-423 OS Caprine arthritis encephalitis virus strain Cork #=GS P33458/364-423 DE Gag polyprotein #=GS P33458/364-423 DR GENE3D; f53172a13f03e3fb3b56695701a40f42/364-423; #=GS P33458/364-423 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS A0A0B5HA17/324-384 AC A0A0B5HA17 #=GS A0A0B5HA17/324-384 OS Small ruminant lentivirus #=GS A0A0B5HA17/324-384 DE Gag protein #=GS A0A0B5HA17/324-384 DR GENE3D; f985bc46e68ed785841a824a3811c0e1/324-384; #=GS A0A0B5HA17/324-384 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GS E1Y7D8/159-214 AC E1Y7D8 #=GS E1Y7D8/159-214 OS Small ruminant lentivirus #=GS E1Y7D8/159-214 DE Gag-pol polyprotein, intergenic region #=GS E1Y7D8/159-214 DR GENE3D; fc4af7fa116e264f789b4ee5631b806b/159-214; #=GS E1Y7D8/159-214 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; #=GF TC 47.0 4.0E-15 #=GF SQ 72 A0A1L2A1Q6/212-237 -----------LGNRGPGQKCYNCGKPGHLARQCRQG----------------------------------- A8T273/163-221 --AQALRPEK-GNGNRPAQRCYNCGKPGHRAKQCRQGIICHNCGKRGHMQRDCRGGKGA-KQG--------- Q6SP69/162-223 -LAQALRPER--RREGQAQRCYNCGKPGHQARQCRQGITCHNCGKRGHVKKDCRGKQGM-RER-QQG----- Q6SP37/174-229 --------------NGPPQRCYNCGKPGHRARQCRQGIMCHNCGKRGHMQKDCRGKRST-GEK-QQGNGKRG P03352/369-431 --AQALRPQGKAGHKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKQQ-GNN-RRG----- Q9DKV9/358-417 --AQALRGGK-EDGKKSVGKCYNCGRPGHRAKECRQGIICHNCGKRGHIQKNCKQKRRK-EQG-N------- Q6SP78/163-223 --AQALRPGK-SAKNGPQQRCYNCGKLGHQARQCRQGIICHNCGKKGHVQKECRQRKSI-REK-QG------ H6TKI0/359-420 --AQALRPDRKGRNQEMGQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKKQ-QGN-SG------ Q6SP58/163-224 --AQALRPDK-GKRNGQPSRCYNCGKPGHRARECRQGVICHNCGKKGHVQKECRGKRNR-EER-QQG----- A0A142J2Y5/380-438 -----------GGIRGPGQKCYNCGKTGHLARQCRQGIICHNCGKKGHRQRDCKQKRREPQGGLRQGNFS-- A8T298/163-224 --AQALRPEK-FKRDKQAQRCYNCGKPGHQARQCRQGIICHNCGKRGHVQRDCRQRKGT-REK-QQG----- Q6SP24/164-223 ---QALKPGR-IARTGPQQRCYNCGKPGHQARHCRQGIICRNCGKRGHMQKDCRGKKGM-GER-QQ------ B1P2I0/2-59 ------RPGK-SARPGPQQRCYNCGKPGHQARQCRQGIVCHGCGKKGHMQKDCRRKKNM-REG-QQG----- F0X367/160-219 -LAQALRPEKKREGQGQGLKCYNCGRGGHLARQCRQGVICHFCGKKGHIKKDCRQRRGK-QD---------- A3R3J7/405-453 --------QQGNRRPGQLFKCFNCGKPGHMSRQCRAPRKCNNCGKTGHISTDCWQMK--------------- Q6H1V6/369-431 --AQALRPNKVGGSSGRNQKCYNCGKEGHLARQCRQGIICHHCGKRGHMQKDCGQKRGE-KRT-QQQ----- I6TGY8/89-132 -------------NQGPGQKCYNCGKLGLLARQCRQGIICHHCEKRGQMQKDCRQKK--------------- A0A0B5H9Z9/324-382 --AQALRPGQ-GKGRGQSARCYNCGKPGHQAKQCRQGIICHHCGKRGHMQKDCRGKKNI-PGK--------- A0A140YI85/102-147 -----------LENKKQGQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKK--------------- A5I841/160-223 -LAQALRTSKKGENAGGQQKCYNCGKIGHLARQCRQGIICHRCGKKGHMQRDCRQKXNE-RQI-QQQ----- A0A0B5HRA9/324-383 --AQALRPEK-GKRNGPAPRCYNCGKLGHQAKQCRQGIICHNCGKRGHMQKDCRGKRVT-RGR-Q------- A0A0B5HDW9/161-220 -LAQALRPER--GKQGQGPRCYNCGKLGHQARQCRQGITCHNCGKRGHLKKDCRSRKNI-RGM-Q------- Q6SP41/163-223 --AQALRPEK-GKRNGSAQRCYNCGKPGHQARQCRQGIICHNCGKRGHMQKECRGKKDI-KGR-QQ------ S5TP14/110-135 ----------TPGNRGQGQKCYNCGKPGHLARQCRQ------------------------------------ M4LZ05/335-397 --AQALRPERNPGNRGSGQKCYNCGNRDTWHGSVRQGIICHHCGKRGHMQKDCRQKKKN-DMK-QQG----- E0WMU9/176-216 ----------------PAQRCYNCGKAGHRARQCRQGIICHNCGKRGHMQRDCRGRT--------------- Q6SP82/162-223 -LAQALRPEK-GRRNGQTPRCYNCGKPGHRAKECRQGIICHNCGKRGHMQKDCRRKREQ-GNG-KR------ I6TGY4/161-215 --AQALSPERNTRDQGPGQKCYNCGKPGHLARQCSQGIICHLCGKRGHMQKDCRQKK--------------- A0A0B5HJU3/169-224 ---------KGKGGPGQVQRCYNCGKPGHQAKQCRQGIICHNCGKRGHLQKDCRGKRNT-GKN-QQG----- A8TCG8/363-422 --AQALRPERGERNKERGQKCYNCGKSGHLARQCRQGITCHFCGKKGHVQEDCRQRKGK-QGG--------- Q6SP20/166-222 -------PEK-IKGKGPEQRCYNCGKPGHQARQCRQGITCHNCGKRGHIQKNCRQKKGI-KEK-QQG----- A8T289/163-224 --AQALRPEK-GNKNKPAQKCYNCGKTGHQARQCRLGIICHSCGKRGHIQRDCRQRGNR-TGK-QQG----- Q6SP85/164-224 ---QALRPGK-SAGNGPQQRCYNCGKPGHRARQCRQGIICHNCGKRGHMQKECRGKKGM-KER-EQG----- M4LXA1/335-397 --AQALRPEKNPGNRGQGQKCYNCGKPGHLARQCRQGIICHHCGKKGHMQRDCRKKKND-GRQ-QQG----- B1P2I9/2-57 ------RPER-EKRNGPAQRCYNCGKPGHRARECRQGIICHNCGKRGHMQKECRGKKGE-K---QQG----- F0X374/163-217 --AQALRPQK-SHLKGKGQQCYNCGKEGHLARQCRQGIICHICGKRGHIQKDCRSKKQ-------------- E1Y7E0/159-214 LLAQALRPTG--ERGAKEQTCYNCGKPGHLARQCRSGKTCYKCGKRGHVQRDCRQGKG-------------- Q6SP64/164-224 ---QALRPGK-VARNGPQQRCYNCGKPGHQARHCRQGIICRNCGKRGHVQRDCGQRQGR-KEK-QQG----- S5TMM5/110-136 ----------TPGNRGPGQKCYNCGKPGHLARQCRQG----------------------------------- E1Y6R2/161-216 --AQALRPERKQGGKGPGQKCYNCGKEGHLARQCRQGIICHFCGKKGHMQRDCRQKKE-------------- E1Y6Q7/161-216 --AQALRPERKQGGKGPGQKCYNCGKEGHLARQCRQGIICHFCGKKGHMQRDCRQKKE-------------- K4HRA4/136-181 -------------------KCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKKKD-SMP-PQG----- Q6SP62/163-224 --AQALRPEK-GKRPGQVQRCYNCGKSGHQARQCRQGIICHNCGRRGHIQRDCREKKGI-KEK-QQG----- Q6SP25/162-218 -LAQALRPER-KNKNGPEQRCYNCGKPGHKAKQCRQGIICHNCGKRGHVQKECRGRKGI------------- K4HUL0/126-177 ---------K-SKGNRPPQRCYNCGKPGHQARQCRQGVICHNCGKRGHVQRECRGKKGM-RER--------- E1Y7Z0/163-214 --AQALRPER-KQGTGPAQRCYNCGKAGHRAKQCRQGIICHNCGKRGHMQKDCRG----------------- C9DI70/365-426 -LAQALRPTG--RKEAKSQTCYNCGKPGHLARQCRSGKTCYKCGKKGHMQKDCRQEKGK-ARQ-QQG----- A0A1L2A1Q1/210-263 -----LKPGR---HRGLEQKCYNCGKPGHLARQCRQGIICHNCGRKGHRQRDCRQKKKD-LQE--------- A0A0B5HA56/162-222 --AQALRPAK-DRSKGQSQRCYNCGKTGHQAKQCRQGIICHNCGKKGHMKKDCRGKKSL-REG-QQ------ K7W925/163-223 --AQALRPEK-KNIQGASQRCYNCGKPGHRARQCRQGIICHHCGKRGHMQKECRGKKTG-MQS---GN---- A8T2A6/177-229 -----------------TQRCYNCGKAGHRAKQCRQGTICHNCGRKGHIQRDCREKKNT-REK-QQGNGRRG E1Y6Q1/160-216 -LSQAMTPERKQGGKGPGQKCYNCGKEGHLARQCRQGIICHMGGKKGHMQRDCRQKKG-------------- Q6SP48/161-222 -LAQALRPEK--KRDGPQQRCYNCGRPGHLAKQCRQGIICHNCGKRGHMQKDCRGKKGK-RER-EQG----- A0A140YI81/110-135 ----------NPGNKGPGRKCYNCGKPGHLARQCRQ------------------------------------ Q6SP66/163-224 --AQALRPKR-GNKNGPTPRCYNCGKPGHQAKQCRQGIICHNCGKRGHMQKDCRGKKGI-RKR-QQG----- A0A0B5HMN0/322-379 --AQALRPGK---GQGQAQRCYNCGKPGHQARQCRQGITCHNCGKKGHLKKDCRSRKDI-RGK-Q------- Q6SP22/163-224 --AQALRPGK-PARSGPQQRCYNCGKPGHQARQCRQGIICHNCGKRGHMQKDCRGKNGR-KER-EQG----- F6M1H2/195-252 --AQALRPQK-AQGRGGKLKCYNCGKEGHIAKQCRNGIICHNCGKRGHIQKGCRSKESK-VV---------- F6M1G9/183-240 LLAQALRPAR--EKDTKSQTCYNCGKPGHLARQCRSGKTCYKCGKKGHMQKDCRQGKGK-A----------- A8TCG0/364-425 --AQALRPGR-KQGTGPTQKCYNCGKAGHRAKQCRQGTICHNCGRKGHIQRDCREKKNT-REK-QQG----- F6M1G8/190-231 ---------------GGRQKCYNCGKEGHLAKQCRNGIICHNCGKRGHVQKDCKSRK--------------- A0A089ZX67/364-423 --AQALRPEK-GGRNG-QQRCYNCGKPGHQARQCRQGVICHNCGKRGHMQKDCRGRKSI-KEG-KQ------ F8RS66/357-413 --AQALRPEK-GKGNGQAQRCYNCGKPGHQAKQCRQGIICHNCGKRGHLKKDCRSKKNI-Q----------- S5TMR8/110-135 ----------NSGNRGTGQKCYNCGKPGHLARQCRQ------------------------------------ Q6SP31/160-222 -LAQALRTEKTSGSRREGQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDCRQKRNN-NKT-QP------ Q6WXQ3/371-432 ---QALRPERRIGGKGPGQKCYNCGKEGHLARQCRQGIICHNCGKRGHMRKDCRQKGGD-KGQ-SQQ----- I6T4K6/137-181 ------------GGQGPGQKCYNSGKPGHLPRQCRQGAICHYCGKRGYKQKDCRQKK--------------- A8T266/161-221 --AQALRPERREGNKGVGQKCYNCGKAGHLARQCRQGITCHFCGKKGHVQKDCRQRKGK-QGG-P------- E1Y728/163-217 --AQALRPQR-PQEKREKQKCYNCGKEGHIARQCRNGIICHNCGKRGHIQKNCRNRKQ-------------- P33458/364-423 --AQALRPGK-GKGNGQPQRCYNCGKPGHQARQCRQGIICHNCGKRGHMQKECRGKRDI-RGK-Q------- A0A0B5HA17/324-384 --AQALRPGK-RQGPGQSKRCYNCGRPGHQAKQYRQGIICHNCGKRGHMQKDCRGKKDT-GGR-QQ------ E1Y7D8/159-214 LLAQALRPTG--ERGAKEQTCYNCGKPGHLARQCRSGKTCYKCGRKGHIQKDCRQGKG-------------- #=GC scorecons 002333332301333643669898985884878887755663666566465566345210111011000000 #=GC scorecons_70 __________________********_**_*******__*__***_**____*___________________ #=GC scorecons_80 ____________________******_**_*******___________________________________ #=GC scorecons_90 ____________________******_**_*_***_____________________________________ //